Guide to the Human Genome
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Name: ATRX Sequence: fasta or formatted (2454aa) NCBI GI: 20336205
Description:

transcriptional regulator ATRX isoform 2

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [2492aa] transcriptional regulator ATRX isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1        101           2
 C cysteine            1.8         43           3
 D aspartate           7.3        180           6
 E glutamate          10.5        257          15
 F phenylalanine       2.1         51           1
 G glycine             4.8        117           3
 H histidine           1.8         44           1
 I isoleucine          4.2        104           2
 K lysine             11.7        288           5
 L leucine             7.1        174           3
 M methionine          2.4         58           2
 N asparagine          5.0        123           2
 P proline             3.5         87           3
 Q glutamine           4.7        115           6
 R arginine            5.1        125           3
 S serine             11.2        275           5
 T threonine           5.1        125           2
 V valine              4.9        120           2
 W tryptophan          0.6         15           1
 Y tyrosine            2.1         52           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcriptional regulator ATRX isoform 2 
ATRX                  0.996   transcriptional regulator ATRX isoform 1 
RAD54L2               0.099   RAD54-like 2 
RAD54L                0.029   RAD54-like protein 
RAD54L                0.029   RAD54-like protein 
ERCC6                 0.023   excision repair cross-complementing rodent repair def...
DSPP                  0.023   dentin sialophosphoprotein preproprotein 
RAD54B                0.023   RAD54 homolog B 
SRCAP                 0.022   Snf2-related CBP activator protein 
ERCC6L                0.021   excision repair protein ERCC6-like 
RSF1                  0.021   remodeling and spacing factor 1 
C9orf102              0.020   RAD26L hypothetical protein 
EIF5B                 0.020   eukaryotic translation initiation factor 5B 
CHD3                  0.020   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.020   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.020   chromodomain helicase DNA binding protein 3 isoform...
SMARCA1               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA5               0.019   SWI/SNF-related matrix-associated actin-dependent re...
HELLS                 0.019   helicase, lymphoid-specific 
CHD2                  0.019   chromodomain helicase DNA binding protein 2 isoform...
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
ANKRD11               0.019   ankyrin repeat domain 11 
CHD4                  0.018   chromodomain helicase DNA binding protein 4 
INO80                 0.018   INO80 complex homolog 1 
CHD1                  0.018   chromodomain helicase DNA binding protein 1 
RPGR                  0.018   retinitis pigmentosa GTPase regulator isoform C [Hom...
CHD5                  0.018   chromodomain helicase DNA binding protein 5 
SMARCA1               0.018   SWI/SNF-related matrix-associated actin-dependent re...
BOD1L                 0.018   biorientation of chromosomes in cell division 1-like...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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