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Search of human proteins with 134288896
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134288896 hypothetical protein LOC143684 [Homo sapiens]
(339 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134288896 hypothetical protein LOC143684 [Homo sapiens] 702 0.0
gi|22749341 hypothetical protein LOC199870 isoform 3 [Homo sapiens] 449 e-126
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 429 e-120
gi|219881540 hypothetical protein LOC199870 isoform 4 [Homo sapi... 408 e-114
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 389 e-108
gi|221139693 hypothetical protein LOC199870 isoform 5 [Homo sapi... 284 9e-77
gi|32698730 nuclear fragile X mental retardation protein interac... 54 2e-07
gi|34577114 cytomatrix protein p110 [Homo sapiens] 50 2e-06
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 48 1e-05
gi|122937233 discs, large (Drosophila) homolog-associated protei... 48 1e-05
gi|61966923 forkhead box B2 [Homo sapiens] 48 1e-05
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 46 5e-05
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 46 5e-05
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 46 5e-05
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 46 5e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 46 5e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 46 5e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 46 5e-05
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 45 7e-05
gi|32307177 forkhead box G1 [Homo sapiens] 45 9e-05
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 45 1e-04
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 45 1e-04
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 44 3e-04
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 44 3e-04
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 44 3e-04
gi|38505294 voltage-dependent calcium channel alpha 1G subunit i... 44 3e-04
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i... 44 3e-04
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i... 44 3e-04
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i... 44 3e-04
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i... 44 3e-04
>gi|134288896 hypothetical protein LOC143684 [Homo sapiens]
Length = 339
Score = 702 bits (1813), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKC 60
MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKC
Sbjct: 1 MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKC 60
Query: 61 AQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRR 120
AQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRR
Sbjct: 61 AQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRR 120
Query: 121 KVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHH 180
KVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHH
Sbjct: 121 KVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHH 180
Query: 181 RHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADS 240
RHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADS
Sbjct: 181 RHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADS 240
Query: 241 GGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEK 300
GGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEK
Sbjct: 241 GGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEK 300
Query: 301 AHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP 339
AHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP
Sbjct: 301 AHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP 339
>gi|22749341 hypothetical protein LOC199870 isoform 3 [Homo sapiens]
Length = 307
Score = 449 bits (1154), Expect = e-126
Identities = 228/336 (67%), Positives = 263/336 (78%), Gaps = 30/336 (8%)
Query: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 2 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 61
Query: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAFDRK++ R+KVD
Sbjct: 62 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDD-RKKVD 120
Query: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHS 183
GKLLCWLCTLSYKRVLQKTKEQRK L S+SS + EK+Q+ H++
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRAGHQEKEQYSRLSGGGHYN------ 170
Query: 184 SSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGT 243
Q S+++IQNE PKKK K ES +NGDS S + + DS GT
Sbjct: 171 ------------------SQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLALDSPGT 212
Query: 244 DNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHK 303
D+FV+I+QLKEEV +LK++L Q+DQ ILEK+KK+TELKADFQYQES +R KMN MEK HK
Sbjct: 213 DHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHK 272
Query: 304 ETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP 339
E EQLQAKNRELLKQ AALSK KK +KSG+I TSP
Sbjct: 273 EVTEQLQAKNRELLKQAAALSKSKKSEKSGAI-TSP 307
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 429 bits (1104), Expect = e-120
Identities = 227/370 (61%), Positives = 262/370 (70%), Gaps = 64/370 (17%)
Query: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQES------------ 51
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQE
Sbjct: 2 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHCN 61
Query: 52 ----------------------KTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQR 89
KTNTICKKCAQNV+ +GTPKPCQYCNIIAAFIG KCQR
Sbjct: 62 LHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQR 121
Query: 90 CTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSL 149
CTNSEKKYGPP +CEQCKQQCAFDRK++ R+KVDGKLLCWLCTLSYKRVLQKTKEQRK L
Sbjct: 122 CTNSEKKYGPPYSCEQCKQQCAFDRKDD-RKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
Query: 150 GSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSA 209
S+SS + EK+Q+ H++ Q S++
Sbjct: 181 ----SSSSRAGHQEKEQYSRLSGGGHYN------------------------SQKTLSTS 212
Query: 210 TIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQT 269
+IQNE PKKK K ES +NGDS S + + DS GTD+FV+I+QLKEEV +LK++L Q+DQ
Sbjct: 213 SIQNEIPKKKSKFESITTNGDSFSPDLALDSPGTDHFVIIAQLKEEVATLKKMLHQKDQM 272
Query: 270 ILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKF 329
ILEK+KK+TELKADFQYQES +R KMN MEK HKE EQLQAKNRELLKQ AALSK KK
Sbjct: 273 ILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTEQLQAKNRELLKQAAALSKSKKS 332
Query: 330 DKSGSILTSP 339
+KSG+I TSP
Sbjct: 333 EKSGAI-TSP 341
>gi|219881540 hypothetical protein LOC199870 isoform 4 [Homo
sapiens]
Length = 278
Score = 408 bits (1048), Expect = e-114
Identities = 214/336 (63%), Positives = 245/336 (72%), Gaps = 59/336 (17%)
Query: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 2 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 61
Query: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAFDRK++ R+KVD
Sbjct: 62 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDD-RKKVD 120
Query: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHS 183
GKLLCWLCTLSYKRVLQKTKEQRK L S+SS + EK+Q + R S
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRAGHQEKEQ------------YSRLS 164
Query: 184 SSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGT 243
H ++ SP+ + DS GT
Sbjct: 165 GGGH-YNSFSPD----------------------------------------LALDSPGT 183
Query: 244 DNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHK 303
D+FV+I+QLKEEV +LK++L Q+DQ ILEK+KK+TELKADFQYQES +R KMN MEK HK
Sbjct: 184 DHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHK 243
Query: 304 ETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP 339
E EQLQAKNRELLKQ AALSK KK +KSG+I TSP
Sbjct: 244 EVTEQLQAKNRELLKQAAALSKSKKSEKSGAI-TSP 278
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 389 bits (998), Expect = e-108
Identities = 213/370 (57%), Positives = 244/370 (65%), Gaps = 93/370 (25%)
Query: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQES------------ 51
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQE
Sbjct: 2 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHCN 61
Query: 52 ----------------------KTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQR 89
KTNTICKKCAQNV+ +GTPKPCQYCNIIAAFIG KCQR
Sbjct: 62 LHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQR 121
Query: 90 CTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSL 149
CTNSEKKYGPP +CEQCKQQCAFDRK++ R+KVDGKLLCWLCTLSYKRVLQKTKEQRK L
Sbjct: 122 CTNSEKKYGPPYSCEQCKQQCAFDRKDD-RKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
Query: 150 GSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSA 209
S+SS + EK+Q + R S H ++ SP+
Sbjct: 181 ----SSSSRAGHQEKEQ------------YSRLSGGGH-YNSFSPD-------------- 209
Query: 210 TIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQT 269
+ DS GTD+FV+I+QLKEEV +LK++L Q+DQ
Sbjct: 210 --------------------------LALDSPGTDHFVIIAQLKEEVATLKKMLHQKDQM 243
Query: 270 ILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKF 329
ILEK+KK+TELKADFQYQES +R KMN MEK HKE EQLQAKNRELLKQ AALSK KK
Sbjct: 244 ILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTEQLQAKNRELLKQAAALSKSKKS 303
Query: 330 DKSGSILTSP 339
+KSG+I TSP
Sbjct: 304 EKSGAI-TSP 312
>gi|221139693 hypothetical protein LOC199870 isoform 5 [Homo
sapiens]
Length = 227
Score = 284 bits (726), Expect = 9e-77
Identities = 169/336 (50%), Positives = 196/336 (58%), Gaps = 110/336 (32%)
Query: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 2 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 61
Query: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
V+ +GT VD
Sbjct: 62 VQLYGT----------------------------------------------------VD 69
Query: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHS 183
GKLLCWLCTLSYKRVLQKTKEQRK L S+SS + EK+Q + R S
Sbjct: 70 GKLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRAGHQEKEQ------------YSRLS 113
Query: 184 SSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGT 243
H ++ SP+ + DS GT
Sbjct: 114 GGGH-YNSFSPD----------------------------------------LALDSPGT 132
Query: 244 DNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHK 303
D+FV+I+QLKEEV +LK++L Q+DQ ILEK+KK+TELKADFQYQES +R KMN MEK HK
Sbjct: 133 DHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHK 192
Query: 304 ETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP 339
E EQLQAKNRELLKQ AALSK KK +KSG+I TSP
Sbjct: 193 EVTEQLQAKNRELLKQAAALSKSKKSEKSGAI-TSP 227
>gi|32698730 nuclear fragile X mental retardation protein
interacting protein 2 [Homo sapiens]
Length = 695
Score = 54.3 bits (129), Expect = 2e-07
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 35/184 (19%)
Query: 153 HSNSSSSSLTEKDQHHPKHHHHH--------HHHHHRHSSSHHKI---SNLSPEEEQGLW 201
HS+ ++ Q P HHHH+ HHHHH H H + + SP+ +
Sbjct: 14 HSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGAEGSPKAQPKPL 73
Query: 202 KQSHKSSATIQNETPKKKP---KLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMS 258
K K + ETPKKK +L + S N S+D E
Sbjct: 74 KHEQKHTLQQHQETPKKKTGYGELNGNAGEREISLKNLSSD--------------EATNP 119
Query: 259 LKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTK----MNSMEKAHKETVEQLQAKNR 314
+ R+L Q + D L + + ++ ++TK NSM+K + ++ E +N+
Sbjct: 120 ISRVLNGNQQVV---DTSLKQTVKANTFGKAGIKTKNFIQKNSMDKKNGKSYENKSGENQ 176
Query: 315 ELLK 318
+ K
Sbjct: 177 SVDK 180
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 50.4 bits (119), Expect = 2e-06
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 165 DQHHPKHHHHHHHHHHRHSSSHHKISNLSP--EEEQGLW 201
D HH HHHHHHHHH S H SP ++E+G+W
Sbjct: 918 DDHHHYHHHHHHHHHRSPGRSQHSNHRPSPDQDDEEGIW 956
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 167 HHPKHHHHHHHHHHR---HSSSHHKISNLSPEEEQGLWKQSHKS---SATIQNETPKKKP 220
HH HHHHHHHHHHR SHH + P+ G + +S S S++ +
Sbjct: 338 HHHHHHHHHHHHHHRAQPPQQSHHPPHHHRPQPHLGSFPESCSSDSESSSYSDHAANDSD 397
Query: 221 KLESKPSNGDSSSINQSADSG 241
S S+ +S S + + G
Sbjct: 398 FGSSLSSSSNSVSSEEEEEEG 418
>gi|122937233 discs, large (Drosophila) homolog-associated protein 3
[Homo sapiens]
Length = 979
Score = 47.8 bits (112), Expect = 1e-05
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 168 HPKHHHHHHHHHHRHSSSHHKISNLSPEEEQG 199
H HHHHHHHHHH H S H K S + G
Sbjct: 220 HTSHHHHHHHHHHHHQSRHGKRSKSKDRKGDG 251
Score = 38.9 bits (89), Expect = 0.007
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 167 HHPKHHHHHHHHHHRH 182
HH HHHHHHHH RH
Sbjct: 223 HHHHHHHHHHHHQSRH 238
Score = 35.8 bits (81), Expect = 0.056
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 141 KTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHH--RHSSSHHKISNLSPEEEQ 198
K + + S G S+ S HH HHHHHH H R S K +
Sbjct: 199 KAEGRGGSGGDSYPGPGSGGPHTSHHHHHHHHHHHHQSRHGKRSKSKDRKGDGRHQAKST 258
Query: 199 GLW 201
G W
Sbjct: 259 GWW 261
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 47.8 bits (112), Expect = 1e-05
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 168 HPKHHHHHHHHHHRHSSSHHKISNLSPE 195
HP HHHH HHHHH H+++HH + P+
Sbjct: 137 HPHHHHHPHHHHHHHAAAHHHHHHHPPQ 164
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 134 SYKRVLQKTKEQRKSLGSSHSNSSSSS--------LTEKDQHHPKHHHHHH---HHHHRH 182
S+ R ++ K R H+ S+ S+ L HHP HHHHHH HHHH H
Sbjct: 101 SFLRRRKRFKVLRADHTHLHAGSTKSAPGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHHH 160
Score = 38.9 bits (89), Expect = 0.007
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 6/24 (25%)
Query: 167 HHPKHHHHHHH---HHHRHSSSHH 187
HH HHHHHHH HHH H HH
Sbjct: 141 HHHPHHHHHHHAAAHHHHH---HH 161
Score = 37.0 bits (84), Expect = 0.025
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 150 GSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHH 187
GS+ S + HH H HHHHHHH HH
Sbjct: 122 GSTKSAPGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHH 159
Score = 36.6 bits (83), Expect = 0.033
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 141 KTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHH 187
+ +++ K L + H++ + S P H H HHHHH H HH
Sbjct: 104 RRRKRFKVLRADHTHLHAGSTKSAPGAGPGGHLHPHHHHHPHHHHHH 150
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 45.8 bits (107), Expect = 5e-05
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 167 HHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGL------WKQSHKSSAT 210
HH HHHHHHHHHH+ I S E++ L +KQS S+ T
Sbjct: 106 HHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPT 155
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 169 PKHHHHHHHHHHRHSSSHHKISNLSP 194
P +HHHHHHHHH H HH+ + P
Sbjct: 103 PSYHHHHHHHHHHH--HHHQQQHQQP 126
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 45.8 bits (107), Expect = 5e-05
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 167 HHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGL------WKQSHKSSAT 210
HH HHHHHHHHHH+ I S E++ L +KQS S+ T
Sbjct: 95 HHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPT 144
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 169 PKHHHHHHHHHHRHSSSHHKISNLSP 194
P +HHHHHHHHH H HH+ + P
Sbjct: 92 PSYHHHHHHHHHHH--HHHQQQHQQP 115
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 45.8 bits (107), Expect = 5e-05
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 167 HHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGL------WKQSHKSSAT 210
HH HHHHHHHHHH+ I S E++ L +KQS S+ T
Sbjct: 95 HHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPT 144
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 169 PKHHHHHHHHHHRHSSSHHKISNLSP 194
P +HHHHHHHHH H HH+ + P
Sbjct: 92 PSYHHHHHHHHHHH--HHHQQQHQQP 115
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 45.8 bits (107), Expect = 5e-05
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 167 HHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGL------WKQSHKSSAT 210
HH HHHHHHHHHH+ I S E++ L +KQS S+ T
Sbjct: 95 HHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPT 144
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 169 PKHHHHHHHHHHRHSSSHHKISNLSP 194
P +HHHHHHHHH H HH+ + P
Sbjct: 92 PSYHHHHHHHHHHH--HHHQQQHQQP 115
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 45.8 bits (107), Expect = 5e-05
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 166 QHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETP 216
QHH HH HHHHHH H HH + + +Q +Q + Q + P
Sbjct: 25 QHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHP 75
Score = 42.7 bits (99), Expect = 5e-04
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 166 QHHPKHHHHHHHHHHRHSSSHH 187
Q H HHH HHHHHH H HH
Sbjct: 24 QQHHHHHHAHHHHHHAHHLHHH 45
Score = 42.4 bits (98), Expect = 6e-04
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 168 HPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPS 227
H +HHHHHH HHH H +HH + + +++ ++Q + Q + +++ + + S
Sbjct: 23 HQQHHHHHHAHHHHH-HAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNS 81
Query: 228 NG 229
G
Sbjct: 82 LG 83
Score = 36.6 bits (83), Expect = 0.033
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 167 HHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNET--------PKK 218
HH HH HH HHHH ++ +++Q +Q + N + P+
Sbjct: 33 HHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQP 92
Query: 219 KPKLESKPSNG--DSSSINQSADSG 241
P +E G DS++ Q+ G
Sbjct: 93 GPDMEQPQHGGAKDSAAGGQADPPG 117
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 45.8 bits (107), Expect = 5e-05
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 166 QHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETP 216
QHH HH HHHHHH H HH + + +Q +Q + Q + P
Sbjct: 25 QHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHP 75
Score = 42.7 bits (99), Expect = 5e-04
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 166 QHHPKHHHHHHHHHHRHSSSHH 187
Q H HHH HHHHHH H HH
Sbjct: 24 QQHHHHHHAHHHHHHAHHLHHH 45
Score = 42.4 bits (98), Expect = 6e-04
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 168 HPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPS 227
H +HHHHHH HHH H +HH + + +++ ++Q + Q + +++ + + S
Sbjct: 23 HQQHHHHHHAHHHHH-HAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNS 81
Query: 228 NG 229
G
Sbjct: 82 LG 83
Score = 36.6 bits (83), Expect = 0.033
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 167 HHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNET--------PKK 218
HH HH HH HHHH ++ +++Q +Q + N + P+
Sbjct: 33 HHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQP 92
Query: 219 KPKLESKPSNG--DSSSINQSADSG 241
P +E G DS++ Q+ G
Sbjct: 93 GPDMEQPQHGGAKDSAAGGQADPPG 117
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 45.8 bits (107), Expect = 5e-05
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 166 QHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETP 216
QHH HH HHHHHH H HH + + +Q +Q + Q + P
Sbjct: 25 QHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHP 75
Score = 42.7 bits (99), Expect = 5e-04
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 166 QHHPKHHHHHHHHHHRHSSSHH 187
Q H HHH HHHHHH H HH
Sbjct: 24 QQHHHHHHAHHHHHHAHHLHHH 45
Score = 42.4 bits (98), Expect = 6e-04
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 168 HPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPS 227
H +HHHHHH HHH H +HH + + +++ ++Q + Q + +++ + + S
Sbjct: 23 HQQHHHHHHAHHHHH-HAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNS 81
Query: 228 NG 229
G
Sbjct: 82 LG 83
Score = 36.6 bits (83), Expect = 0.033
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 167 HHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNET--------PKK 218
HH HH HH HHHH ++ +++Q +Q + N + P+
Sbjct: 33 HHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQP 92
Query: 219 KPKLESKPSNG--DSSSINQSADSG 241
P +E G DS++ Q+ G
Sbjct: 93 GPDMEQPQHGGAKDSAAGGQADPPG 117
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 45.4 bits (106), Expect = 7e-05
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 166 QHHPKHHHHHHHHHHRH--SSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLE 223
QHH HHHHHHHHHH H H + + + + S +Q ++ P+L
Sbjct: 63 QHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDS-GGPPELG 121
Query: 224 SKPS--NGDSSSINQSADSG 241
S P +SSS+ S +G
Sbjct: 122 SSPPVLCSNSSSLGSSTPTG 141
Score = 36.2 bits (82), Expect = 0.043
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 149 LGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSS 208
L +S S+ + ++ HH HHHHH H HH ++ Q L H
Sbjct: 41 LSTSSSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHH----QQQQHQALQTNWH--- 93
Query: 209 ATIQNETPKKKPKLESKPSNGDSSSINQSADSGG 242
P++ S PS S Q DSGG
Sbjct: 94 ----------LPQMSSPPSAARHSLCLQ-PDSGG 116
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 45.1 bits (105), Expect = 9e-05
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 165 DQHHPKHHHHHHHHHH 180
+ HHP+HHHHHHHHHH
Sbjct: 41 NSHHPQHHHHHHHHHH 56
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 143 KEQRKSLGSSHS-NSSSSSLTEKDQHHPKHHHH--HH--HHHHRHSSSHH 187
KE + SS S NS + D HH H HH HH HHHH H HH
Sbjct: 8 KEVKMIPKSSFSINSLVPEAVQNDNHHASHGHHNSHHPQHHHHHHHHHHH 57
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 44.7 bits (104), Expect = 1e-04
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 22/110 (20%)
Query: 145 QRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSS----------HHKISNLSP 194
Q+ +L H NSS HHHHHHHHHH H ++ +N S
Sbjct: 585 QQNALHHHHGNSSH------------HHHHHHHHHHHHGQQALGNRTRPRVYNSPTNSSS 632
Query: 195 EEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGTD 244
++ SH S ++ + T S + G+ + N+ + D
Sbjct: 633 TQDSMEVGHSHHSMTSLSSSTTSSSTSSSSTGNQGNQAYQNRPVAANTLD 682
Score = 30.4 bits (67), Expect = 2.4
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 169 PKHHHH--------HHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKP 220
P+ + HHHHHH H HH L ++ SS+T +
Sbjct: 584 PQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGNRTRPRVYNSPTNSSSTQDSMEVGHSH 643
Query: 221 KLESKPSNGDSSSINQSADSGGTDN 245
+ S+ +SS S+ +G N
Sbjct: 644 HSMTSLSSSTTSSSTSSSSTGNQGN 668
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 44.7 bits (104), Expect = 1e-04
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 22/110 (20%)
Query: 145 QRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSS----------HHKISNLSP 194
Q+ +L H NSS HHHHHHHHHH H ++ +N S
Sbjct: 594 QQNALHHHHGNSSH------------HHHHHHHHHHHHGQQALGNRTRPRVYNSPTNSSS 641
Query: 195 EEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGTD 244
++ SH S ++ + T S + G+ + N+ + D
Sbjct: 642 TQDSMEVGHSHHSMTSLSSSTTSSSTSSSSTGNQGNQAYQNRPVAANTLD 691
Score = 30.4 bits (67), Expect = 2.4
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 169 PKHHHH--------HHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKP 220
P+ + HHHHHH H HH L ++ SS+T +
Sbjct: 593 PQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGNRTRPRVYNSPTNSSSTQDSMEVGHSH 652
Query: 221 KLESKPSNGDSSSINQSADSGGTDN 245
+ S+ +SS S+ +G N
Sbjct: 653 HSMTSLSSSTTSSSTSSSSTGNQGN 677
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 43.5 bits (101), Expect = 3e-04
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 154 SNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQN 213
S+S S S HH HHHHHHHHH+ + + SPE + S +
Sbjct: 479 SSSCSRSHRRLSVHHLVHHHHHHHHHYHLGNGTLRAPRASPEIQDRDANGSRRLML---- 534
Query: 214 ETPKKKPKLESKPSNGDSS 232
P P L P G S
Sbjct: 535 -PPPSTPALSGAPPGGAES 552
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 23/81 (28%)
Query: 149 LGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSS 208
LG + SSS + H HHHHHHH H H +
Sbjct: 471 LGGQETQPSSSCSRSHRRLSVHHLVHHHHHHHHH---------------------YHLGN 509
Query: 209 ATIQNETPKKKPKLESKPSNG 229
T++ P+ P+++ + +NG
Sbjct: 510 GTLR--APRASPEIQDRDANG 528
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 43.5 bits (101), Expect = 3e-04
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 143 KEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWK 202
K+ +SL H S+ + + + H HH HHHHHHH + L P+ ++ +
Sbjct: 630 KDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSE 689
Query: 203 QSHKSSATIQNETPKKKPKLESKP------SNGDSSSINQSADS 240
+ H A P P L P S G +S S DS
Sbjct: 690 RHH--PAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDS 731
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 43.5 bits (101), Expect = 3e-04
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 143 KEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWK 202
K+ +SL H S+ + + + H HH HHHHHHH + L P+ ++ +
Sbjct: 630 KDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSE 689
Query: 203 QSHKSSATIQNETPKKKPKLESKP------SNGDSSSINQSADS 240
+ H A P P L P S G +S S DS
Sbjct: 690 RHH--PAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDS 731
>gi|38505294 voltage-dependent calcium channel alpha 1G subunit
isoform 15 [Homo sapiens]
Length = 1555
Score = 43.5 bits (101), Expect = 3e-04
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 154 SNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQN 213
S+S S S HH HHHHHHHHH+ + + SPE + S +
Sbjct: 479 SSSCSRSHRRLSVHHLVHHHHHHHHHYHLGNGTLRAPRASPEIQDRDANGSRRLML---- 534
Query: 214 ETPKKKPKLESKPSNGDSS 232
P P L P G S
Sbjct: 535 -PPPSTPALSGAPPGGAES 552
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 23/81 (28%)
Query: 149 LGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSS 208
LG + SSS + H HHHHHHH H H +
Sbjct: 471 LGGQETQPSSSCSRSHRRLSVHHLVHHHHHHHHH---------------------YHLGN 509
Query: 209 ATIQNETPKKKPKLESKPSNG 229
T++ P+ P+++ + +NG
Sbjct: 510 GTLR--APRASPEIQDRDANG 528
>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
isoform 3 [Homo sapiens]
Length = 2343
Score = 43.5 bits (101), Expect = 3e-04
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 154 SNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQN 213
S+S S S HH HHHHHHHHH+ + + SPE + S +
Sbjct: 479 SSSCSRSHRRLSVHHLVHHHHHHHHHYHLGNGTLRAPRASPEIQDRDANGSRRLML---- 534
Query: 214 ETPKKKPKLESKPSNGDSS 232
P P L P G S
Sbjct: 535 -PPPSTPALSGAPPGGAES 552
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 23/81 (28%)
Query: 149 LGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSS 208
LG + SSS + H HHHHHHH H H +
Sbjct: 471 LGGQETQPSSSCSRSHRRLSVHHLVHHHHHHHHH---------------------YHLGN 509
Query: 209 ATIQNETPKKKPKLESKPSNG 229
T++ P+ P+++ + +NG
Sbjct: 510 GTLR--APRASPEIQDRDANG 528
>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
isoform 13 [Homo sapiens]
Length = 2243
Score = 43.5 bits (101), Expect = 3e-04
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 154 SNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQN 213
S+S S S HH HHHHHHHHH+ + + SPE + S +
Sbjct: 479 SSSCSRSHRRLSVHHLVHHHHHHHHHYHLGNGTLRAPRASPEIQDRDANGSRRLML---- 534
Query: 214 ETPKKKPKLESKPSNGDSS 232
P P L P G S
Sbjct: 535 -PPPSTPALSGAPPGGAES 552
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 23/81 (28%)
Query: 149 LGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSS 208
LG + SSS + H HHHHHHH H H +
Sbjct: 471 LGGQETQPSSSCSRSHRRLSVHHLVHHHHHHHHH---------------------YHLGN 509
Query: 209 ATIQNETPKKKPKLESKPSNG 229
T++ P+ P+++ + +NG
Sbjct: 510 GTLR--APRASPEIQDRDANG 528
>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
isoform 12 [Homo sapiens]
Length = 2250
Score = 43.5 bits (101), Expect = 3e-04
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 154 SNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQN 213
S+S S S HH HHHHHHHHH+ + + SPE + S +
Sbjct: 479 SSSCSRSHRRLSVHHLVHHHHHHHHHYHLGNGTLRAPRASPEIQDRDANGSRRLML---- 534
Query: 214 ETPKKKPKLESKPSNGDSS 232
P P L P G S
Sbjct: 535 -PPPSTPALSGAPPGGAES 552
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 23/81 (28%)
Query: 149 LGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSS 208
LG + SSS + H HHHHHHH H H +
Sbjct: 471 LGGQETQPSSSCSRSHRRLSVHHLVHHHHHHHHH---------------------YHLGN 509
Query: 209 ATIQNETPKKKPKLESKPSNG 229
T++ P+ P+++ + +NG
Sbjct: 510 GTLR--APRASPEIQDRDANG 528
>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
isoform 10 [Homo sapiens]
Length = 2266
Score = 43.5 bits (101), Expect = 3e-04
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 154 SNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQN 213
S+S S S HH HHHHHHHHH+ + + SPE + S +
Sbjct: 479 SSSCSRSHRRLSVHHLVHHHHHHHHHYHLGNGTLRAPRASPEIQDRDANGSRRLML---- 534
Query: 214 ETPKKKPKLESKPSNGDSS 232
P P L P G S
Sbjct: 535 -PPPSTPALSGAPPGGAES 552
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 23/81 (28%)
Query: 149 LGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSS 208
LG + SSS + H HHHHHHH H H +
Sbjct: 471 LGGQETQPSSSCSRSHRRLSVHHLVHHHHHHHHH---------------------YHLGN 509
Query: 209 ATIQNETPKKKPKLESKPSNG 229
T++ P+ P+++ + +NG
Sbjct: 510 GTLR--APRASPEIQDRDANG 528
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.125 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,899,065
Number of Sequences: 37866
Number of extensions: 676694
Number of successful extensions: 7804
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 4137
Number of HSP's gapped (non-prelim): 2177
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.