Guide to the Human Genome
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Name: FAM76A Sequence: fasta or formatted (278aa) NCBI GI: 219881540
Description:

hypothetical protein LOC199870 isoform 4

Not currently referenced in the text

Other entries for this name:
alt prot {341aa} hypothetical protein LOC199870 isoform 1
alt prot {312aa} hypothetical protein LOC199870 isoform 2
alt prot {227aa} hypothetical protein LOC199870 isoform 5
alt prot {307aa} hypothetical protein LOC199870 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         20           3
 C cysteine            6.1         17           1
 D aspartate           3.2          9           2
 E glutamate           7.2         20           2
 F phenylalanine       2.5          7           1
 G glycine             4.0         11           3
 H histidine           2.9          8           1
 I isoleucine          3.6         10           2
 K lysine             13.3         37           2
 L leucine             7.9         22           2
 M methionine          2.2          6           1
 N asparagine          2.9          8           1
 P proline             3.2          9           2
 Q glutamine           9.7         27           2
 R arginine            4.3         12           1
 S serine              7.2         20           4
 T threonine           5.4         15           1
 V valine              2.9          8           2
 W tryptophan          0.4          1           1
 Y tyrosine            4.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC199870 isoform 4 
FAM76A                0.973   hypothetical protein LOC199870 isoform 3 
FAM76A                0.965   hypothetical protein LOC199870 isoform 2 
FAM76A                0.938   hypothetical protein LOC199870 isoform 1 
FAM76A                0.713   hypothetical protein LOC199870 isoform 5 
FAM76B                0.696   hypothetical protein LOC143684 
MCC                   0.031   mutated in colorectal cancers isoform 1 
MCC                   0.031   mutated in colorectal cancers isoform 2 
ANKRD18A              0.027   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.027   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.027   PREDICTED: ankyrin repeat domain 18A 
LRRCC1                0.027   sodium channel associated protein 2 isoform b [Homo...
LRRCC1                0.027   sodium channel associated protein 2 isoform a [Homo...
EEA1                  0.025   early endosome antigen 1, 162kD 
FHAD1                 0.025   forkhead-associated (FHA) phosphopeptide binding do...
AKAP9                 0.025   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.025   A-kinase anchor protein 9 isoform 3 
GOLGA4                0.025   golgi autoantigen, golgin subfamily a, 4 
ANKRD18B              0.024   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.024   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.024   PREDICTED: ankyrin repeat domain 18B 
PPP1R12B              0.024   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.024   protein phosphatase 1, regulatory (inhibitor) subuni...
KIAA0774              0.024   hypothetical protein LOC23281 isoform b 
KIAA0774              0.024   hypothetical protein LOC23281 isoform a 
LMNA                  0.022   lamin A/C isoform 3 
LMNA                  0.022   lamin A/C isoform 2 
LMNA                  0.022   lamin A/C isoform 1 precursor 
LOC645202             0.022   PREDICTED: hypothetical protein LOC645202 
LOC100133758          0.022   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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