Guide to the Human Genome
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Name: FAM76A Sequence: fasta or formatted (227aa) NCBI GI: 221139693
Description:

hypothetical protein LOC199870 isoform 5

Not currently referenced in the text

Other entries for this name:
alt prot {341aa} hypothetical protein LOC199870 isoform 1
alt prot {312aa} hypothetical protein LOC199870 isoform 2
alt prot {278aa} hypothetical protein LOC199870 isoform 4
alt prot {307aa} hypothetical protein LOC199870 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         17           3
 C cysteine            4.4         10           1
 D aspartate           2.6          6           1
 E glutamate           7.9         18           2
 F phenylalanine       2.2          5           1
 G glycine             4.0          9           3
 H histidine           3.5          8           1
 I isoleucine          3.1          7           2
 K lysine             12.8         29           2
 L leucine             9.7         22           2
 M methionine          2.6          6           1
 N asparagine          2.2          5           1
 P proline             2.2          5           1
 Q glutamine           9.7         22           2
 R arginine            4.0          9           1
 S serine              7.9         18           4
 T threonine           6.2         14           1
 V valine              3.5          8           2
 W tryptophan          0.4          1           1
 Y tyrosine            3.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC199870 isoform 5 
FAM76A                0.945   hypothetical protein LOC199870 isoform 4 
FAM76A                0.910   hypothetical protein LOC199870 isoform 3 
FAM76A                0.901   hypothetical protein LOC199870 isoform 2 
FAM76A                0.867   hypothetical protein LOC199870 isoform 1 
FAM76B                0.595   hypothetical protein LOC143684 
TRIM21                0.051   tripartite motif protein 21 
MCC                   0.039   mutated in colorectal cancers isoform 1 
MCC                   0.039   mutated in colorectal cancers isoform 2 
TRIM60                0.039   ring finger protein 129 
ANKRD18A              0.034   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.034   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.034   PREDICTED: ankyrin repeat domain 18A 
LRRCC1                0.034   sodium channel associated protein 2 isoform b [Homo...
LRRCC1                0.034   sodium channel associated protein 2 isoform a [Homo...
KIF5A                 0.032   kinesin family member 5A 
EEA1                  0.032   early endosome antigen 1, 162kD 
TRIM69                0.032   tripartite motif-containing 69 isoform a 
FHAD1                 0.032   forkhead-associated (FHA) phosphopeptide binding do...
AKAP9                 0.032   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.032   A-kinase anchor protein 9 isoform 3 
ANKRD18B              0.030   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.030   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.030   PREDICTED: ankyrin repeat domain 18B 
PPP1R12B              0.030   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.030   protein phosphatase 1, regulatory (inhibitor) subuni...
KIAA0774              0.030   hypothetical protein LOC23281 isoform b 
KIAA0774              0.030   hypothetical protein LOC23281 isoform a 
LMNA                  0.028   lamin A/C isoform 3 
LMNA                  0.028   lamin A/C isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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