Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM76A Sequence: fasta or formatted (312aa) NCBI GI: 219881538
Description:

hypothetical protein LOC199870 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {341aa} hypothetical protein LOC199870 isoform 1
alt prot {278aa} hypothetical protein LOC199870 isoform 4
alt prot {227aa} hypothetical protein LOC199870 isoform 5
alt prot {307aa} hypothetical protein LOC199870 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         23           3
 C cysteine            6.1         19           1
 D aspartate           3.2         10           2
 E glutamate           6.7         21           2
 F phenylalanine       2.2          7           1
 G glycine             4.8         15           3
 H histidine           3.2         10           1
 I isoleucine          4.2         13           2
 K lysine             11.9         37           2
 L leucine             8.0         25           2
 M methionine          1.9          6           1
 N asparagine          3.2         10           1
 P proline             3.5         11           2
 Q glutamine           8.7         27           2
 R arginine            4.5         14           1
 S serine              8.3         26           4
 T threonine           5.4         17           1
 V valine              2.9          9           2
 W tryptophan          0.3          1           1
 Y tyrosine            3.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC199870 isoform 2 
FAM76A                0.976   hypothetical protein LOC199870 isoform 1 
FAM76A                0.858   hypothetical protein LOC199870 isoform 4 
FAM76A                0.834   hypothetical protein LOC199870 isoform 3 
FAM76A                0.633   hypothetical protein LOC199870 isoform 5 
FAM76B                0.588   hypothetical protein LOC143684 
ZMAT1                 0.066   zinc finger, matrin type 1 isoform 1 
MAP4K1                0.061   mitogen-activated protein kinase kinase kinase kinase...
ADRA1A                0.057   alpha-1A-adrenergic receptor isoform 2 
NEK4                  0.052   NIMA-related kinase 4 
C11orf80              0.052   hypothetical protein LOC79703 
KCNRG                 0.050   potassium channel regulator isoform 2 
BCAS4                 0.050   breast carcinoma amplified sequence 4 isoform a [Hom...
SLC36A3               0.048   solute carrier family 36, member 3 isoform 1 
IL12RB1               0.047   interleukin 12 receptor, beta 1 isoform 2 precursor ...
ARGFX                 0.045   arginine-fifty homeobox 
IFT20                 0.044   intraflagellar transport protein IFT20 
RPGRIP1L              0.042   RPGRIP1-like isoform a 
CCNJL                 0.040   cyclin J-like 
LOC100293423          0.040   PREDICTED: hypothetical protein 
LOC100290837          0.040   PREDICTED: hypothetical protein XP_002347267 
LOC100289388          0.040   PREDICTED: hypothetical protein XP_002343124 
MAD2L1BP              0.034   MAD2L1 binding protein isoform 1 
NOS3                  0.032   nitric oxide synthase 3 isoform 4 
LOC285501             0.032   hypothetical protein LOC285501 
SYT14                 0.031   synaptotagmin XIV isoform 2 
SYT14                 0.031   synaptotagmin XIV isoform 1 
C15orf40              0.031   hypothetical protein LOC123207 isoform b 
C20orf30              0.031   hypothetical protein LOC29058 isoform 1 
MYL10                 0.031   myosin, light chain 10, regulatory 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press