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Search of human proteins with 134133279
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134133279 SP140 nuclear body protein-like [Homo sapiens]
(580 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134133279 SP140 nuclear body protein-like [Homo sapiens] 1200 0.0
gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] 793 0.0
gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens] 407 e-113
gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens] 306 3e-83
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 285 8e-77
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] 264 1e-70
gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens] 119 8e-27
gi|52487277 SP140 nuclear body protein isoform 2 [Homo sapiens] 117 2e-26
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 106 5e-23
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 103 4e-22
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 102 7e-22
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 102 7e-22
gi|209977097 tripartite motif-containing 66 [Homo sapiens] 90 5e-18
gi|4557291 autoimmune regulator isoform 1 [Homo sapiens] 79 9e-15
gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] 64 5e-10
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 63 6e-10
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 63 8e-10
gi|38788260 bromodomain PHD finger transcription factor isoform ... 57 5e-08
gi|38788274 bromodomain PHD finger transcription factor isoform ... 57 5e-08
gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens] 55 2e-07
gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens] 55 2e-07
gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens] 53 9e-07
gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens] 53 9e-07
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 51 3e-06
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 51 3e-06
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 49 1e-05
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 49 1e-05
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 49 1e-05
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 47 4e-05
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 45 1e-04
>gi|134133279 SP140 nuclear body protein-like [Homo sapiens]
Length = 580
Score = 1200 bits (3104), Expect = 0.0
Identities = 580/580 (100%), Positives = 580/580 (100%)
Query: 1 MAGGGSDLSTRGLNGGVSQVANEMNHLPAHSQSLQRLFTEDQDVDEGLVYDTVFKHFKRH 60
MAGGGSDLSTRGLNGGVSQVANEMNHLPAHSQSLQRLFTEDQDVDEGLVYDTVFKHFKRH
Sbjct: 1 MAGGGSDLSTRGLNGGVSQVANEMNHLPAHSQSLQRLFTEDQDVDEGLVYDTVFKHFKRH 60
Query: 61 KLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNLVPVQRVVYNVLSELEKTFNLS 120
KLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNLVPVQRVVYNVLSELEKTFNLS
Sbjct: 61 KLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNLVPVQRVVYNVLSELEKTFNLS 120
Query: 121 VLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDRKEREERPDIKLSLKQGEVPES 180
VLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDRKEREERPDIKLSLKQGEVPES
Sbjct: 121 VLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDRKEREERPDIKLSLKQGEVPES 180
Query: 181 PEARKESDQACGKMDTVDIANNSTLGKPKRKRRKKKGHGWSRMGTRTQKNNQQNDNSKAD 240
PEARKESDQACGKMDTVDIANNSTLGKPKRKRRKKKGHGWSRMGTRTQKNNQQNDNSKAD
Sbjct: 181 PEARKESDQACGKMDTVDIANNSTLGKPKRKRRKKKGHGWSRMGTRTQKNNQQNDNSKAD 240
Query: 241 GQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKHKDETVDFQA 300
GQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKHKDETVDFQA
Sbjct: 241 GQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKHKDETVDFQA 300
Query: 301 PLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSKNWRLSVRCG 360
PLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSKNWRLSVRCG
Sbjct: 301 PLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSKNWRLSVRCG 360
Query: 361 GWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRDGGELFCCDT 420
GWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRDGGELFCCDT
Sbjct: 361 GWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRDGGELFCCDT 420
Query: 421 CSRVFHEDCHIPPVESEKTPWNCIFCRMKESPGSQQCCQESEVLERQMCPEEQLKCEFLL 480
CSRVFHEDCHIPPVESEKTPWNCIFCRMKESPGSQQCCQESEVLERQMCPEEQLKCEFLL
Sbjct: 421 CSRVFHEDCHIPPVESEKTPWNCIFCRMKESPGSQQCCQESEVLERQMCPEEQLKCEFLL 480
Query: 481 LKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQDMRLIF 540
LKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQDMRLIF
Sbjct: 481 LKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQDMRLIF 540
Query: 541 QNHRASYKYKDFGQMGLRLEAEFEKDFKEVFAIQETNGNS 580
QNHRASYKYKDFGQMGLRLEAEFEKDFKEVFAIQETNGNS
Sbjct: 541 QNHRASYKYKDFGQMGLRLEAEFEKDFKEVFAIQETNGNS 580
>gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]
Length = 867
Score = 793 bits (2048), Expect = 0.0
Identities = 374/405 (92%), Positives = 388/405 (95%)
Query: 176 EVPESPEARKESDQACGKMDTVDIANNSTLGKPKRKRRKKKGHGWSRMGTRTQKNNQQND 235
EVP SPEAR ESDQACG MDTVDIANNSTLGKPKRKRRKK+GHGWSRM R Q+N+QQND
Sbjct: 463 EVPGSPEARTESDQACGTMDTVDIANNSTLGKPKRKRRKKRGHGWSRMRMRRQENSQQND 522
Query: 236 NSKADGQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKHKDET 295
NSKADGQ+VSSEKKAN+NLKDLSKIRGRKRGKPGT FTQSDRA QKRVRSRASRKHKDET
Sbjct: 523 NSKADGQVVSSEKKANVNLKDLSKIRGRKRGKPGTRFTQSDRAAQKRVRSRASRKHKDET 582
Query: 296 VDFQAPLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSKNWRL 355
VDF+APLLPVTCGGVKGILHK+KL+QG L KCIQTEDGKWFTP EFEIKGG+ARSKNWRL
Sbjct: 583 VDFKAPLLPVTCGGVKGILHKKKLQQGILVKCIQTEDGKWFTPTEFEIKGGHARSKNWRL 642
Query: 356 SVRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRDGGEL 415
SVRCGGWPLR LME G LP+PPRI YR KKRILKSQNNSSVDPCMRNLDECEVCRDGGEL
Sbjct: 643 SVRCGGWPLRWLMENGFLPDPPRIRYRKKKRILKSQNNSSVDPCMRNLDECEVCRDGGEL 702
Query: 416 FCCDTCSRVFHEDCHIPPVESEKTPWNCIFCRMKESPGSQQCCQESEVLERQMCPEEQLK 475
FCCDTCSRVFHEDCHIPPVE+E+TPWNCIFCRMKESPGSQQCCQESEVLERQMCPEEQLK
Sbjct: 703 FCCDTCSRVFHEDCHIPPVEAERTPWNCIFCRMKESPGSQQCCQESEVLERQMCPEEQLK 762
Query: 476 CEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQD 535
CEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQD
Sbjct: 763 CEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQD 822
Query: 536 MRLIFQNHRASYKYKDFGQMGLRLEAEFEKDFKEVFAIQETNGNS 580
MRLIFQNHRASYKYKDFGQMG RLEAEFEK+FKEVFAIQETNGN+
Sbjct: 823 MRLIFQNHRASYKYKDFGQMGFRLEAEFEKNFKEVFAIQETNGNN 867
Score = 132 bits (333), Expect = 7e-31
Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 11/170 (6%)
Query: 40 EDQDVDEGLVYDTVFKHFKRHKLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNL 99
E Q++ E + + +F+ F+ +K+EI++AI + FPFL GLRDR I+ +M+E +++ RNL
Sbjct: 29 EGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFLMGLRDRSFISEQMYEHFQEAFRNL 88
Query: 100 VPVQRVVYNVLSELEKTFNLSVLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDR 159
VPV RV+Y VLSELEKTF S LEALFS +N+ YPDL IY+SF+N + Q ++
Sbjct: 89 VPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYPDLNEIYRSFQNVCYEHSPLQMNNV 148
Query: 160 KEREERPDIKLSLKQGEVPESPEARKESDQACGKMDTVDIANNSTLGKPK 209
+ E+RP + P ++E+ AC +MD + + + P+
Sbjct: 149 NDLEDRPRL-----------LPYGKQENSNACHEMDDIAVPQEALSSSPR 187
>gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens]
Length = 885
Score = 407 bits (1046), Expect = e-113
Identities = 218/407 (53%), Positives = 267/407 (65%), Gaps = 28/407 (6%)
Query: 177 VPESPEARKESDQACGKMDTVDIANNSTLGKPKRKRRKKKGHGWSRMGTRTQKNNQQNDN 236
VP S EAR ES QA MDT+D+ NNSTL K KRRKK+ H R++ N Q
Sbjct: 498 VPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRH-------RSKVNGLQRGR 550
Query: 237 SKADGQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKHKDETV 296
K K +N K + K R ++RG+ +++ P KR R R R KDE +
Sbjct: 551 KKD-----RPRKHLTLNNK-VQKKRWQQRGR------KANTRPLKRRRKRGPRIPKDENI 598
Query: 297 DFQAPLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSKNWRLS 356
+F+ LPVTCG VKG L+KE+ +QGT KCIQ+ED KWFTP EFEI+G SKNW+LS
Sbjct: 599 NFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLS 658
Query: 357 VRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRDGGELF 416
+RCGG+ L+ LME LP PP KKRIL+S NN+ VDPC N + CEVC G LF
Sbjct: 659 IRCGGYTLKVLMENKFLPEPPS---TRKKRILESHNNTLVDPCPENSNICEVCNKWGRLF 715
Query: 417 CCDTCSRVFHEDCHIPPVESEKTPWNCIFCRMK----ESPGSQQCCQESEVLERQMCPEE 472
CCDTC R FHE CHIP VE+ K PW+CIFCR+K P SQ QESEVL RQM PEE
Sbjct: 716 CCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEE 775
Query: 473 QLKCEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGF 532
QLKCEFLLLKVYC S+S FFA PYY RE QG ++PMWL+K+K LNE Y +VEGF
Sbjct: 776 QLKCEFLLLKVYCDSKSCFFASEPYYN--REGSQGPQKPMWLNKVKTSLNEQMYTRVEGF 833
Query: 533 VQDMRLIFQNHRASYKYKDFGQMGLRLEAEFEKDFKEVFAIQETNGN 579
VQDMRLIF NH+ Y+ F ++G++++ FEK+F+ +FAIQET+ N
Sbjct: 834 VQDMRLIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAIQETSKN 880
Score = 285 bits (729), Expect = 8e-77
Identities = 141/175 (80%), Positives = 156/175 (89%)
Query: 1 MAGGGSDLSTRGLNGGVSQVANEMNHLPAHSQSLQRLFTEDQDVDEGLVYDTVFKHFKRH 60
MAGGG DLSTR LN +S VANEMNHLPAHS LQR+FTEDQ VD+ L+YD VFKHFKR+
Sbjct: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
Query: 61 KLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNLVPVQRVVYNVLSELEKTFNLS 120
K+EISNAIKKTFPFLEGLRDR+LITNKMFEDS+DSCRNLVPVQRVVYNVLSELEKTFNL
Sbjct: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
Query: 121 VLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDRKEREERPDIKLSLKQG 175
VLEALFS+VNMQEYPDLIHIYK F+N I DKL QES+ +EREER ++LSL+QG
Sbjct: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQG 175
>gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens]
Length = 713
Score = 306 bits (785), Expect = 3e-83
Identities = 173/406 (42%), Positives = 228/406 (56%), Gaps = 47/406 (11%)
Query: 182 EARKESDQACGKMDTVDIANNSTLGK-----PKRKRRKKKG-----HGWSRMGTRTQKNN 231
+AR E + + +D + GK P RR +G HG K
Sbjct: 337 KARTECARKSRSEEIIDGTSEMNEGKRSQKTPSTPRRVTQGAASPGHGIQEKLQVVDKVT 396
Query: 232 QQNDNSKADGQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKH 291
Q+ D+S + +++ +KA K K R +++ K + S R QK + R K
Sbjct: 397 QRKDDSTWNSEVMMRVQKART--KCARKSRSKEKKKEKDICSSSKRRFQKNIHRRG--KP 452
Query: 292 KDETVDFQAPLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSK 351
K +TVDF LPVTCG KGIL+K+K++ G+ KCI+ EDG W TP EFE++G +K
Sbjct: 453 KSDTVDFHCSKLPVTCGEAKGILYKKKMKHGSSVKCIRNEDGTWLTPNEFEVEGKGRNAK 512
Query: 352 NWRLSVRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRD 411
NW+ ++RC G L L++ +N DECEVC
Sbjct: 513 NWKRNIRCEGMTLGELLKR------------------------------KNSDECEVCCQ 542
Query: 412 GGELFCCDTCSRVFHEDCHIPPVESEKTPWNCIFCRMKESPGSQQCCQESEVLERQMCPE 471
GG+L CC TC RVFHEDCHIPPVE+++ W+C FCRMK S GSQQC S+ LERQM P+
Sbjct: 543 GGQLLCCGTCPRVFHEDCHIPPVEAKRMLWSCTFCRMKRSSGSQQCHHVSKTLERQMQPQ 602
Query: 472 EQLKCEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEG 531
+QLKCEFLLLK YC +SSFF IP + IR+ + +E MWLD +K+RL Y V
Sbjct: 603 DQLKCEFLLLKAYCHPQSSFFTGIP--FNIRDYGEPFQEAMWLDLVKERLITEMY-TVAW 659
Query: 532 FVQDMRLIFQNHRASYKYKDFGQMGLRLEAEFEKDFKEVFAIQETN 577
FV+DMRL+F+NH+ YK DFGQ+GL LEAEFEKD K+V E N
Sbjct: 660 FVRDMRLMFRNHKTFYKASDFGQVGLDLEAEFEKDLKDVLGFHEAN 705
Score = 119 bits (298), Expect = 8e-27
Identities = 56/109 (51%), Positives = 82/109 (75%), Gaps = 5/109 (4%)
Query: 37 LFTEDQDVDEGLVYDTVFKHFKRHKLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSC 96
+FT + ++E L F+HF KL I+ AI K FPF EGL D +IT +M+ +S ++C
Sbjct: 1 MFTMTRAMEEAL-----FQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEAC 55
Query: 97 RNLVPVQRVVYNVLSELEKTFNLSVLEALFSEVNMQEYPDLIHIYKSFK 145
RNL+PV RVV+N+L++LE+TFNLS+L LFS++N++EYP+L+ IY+SFK
Sbjct: 56 RNLIPVSRVVHNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFK 104
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 285 bits (729), Expect = 8e-77
Identities = 141/175 (80%), Positives = 156/175 (89%)
Query: 1 MAGGGSDLSTRGLNGGVSQVANEMNHLPAHSQSLQRLFTEDQDVDEGLVYDTVFKHFKRH 60
MAGGG DLSTR LN +S VANEMNHLPAHS LQR+FTEDQ VD+ L+YD VFKHFKR+
Sbjct: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
Query: 61 KLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNLVPVQRVVYNVLSELEKTFNLS 120
K+EISNAIKKTFPFLEGLRDR+LITNKMFEDS+DSCRNLVPVQRVVYNVLSELEKTFNL
Sbjct: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
Query: 121 VLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDRKEREERPDIKLSLKQG 175
VLEALFS+VNMQEYPDLIHIYK F+N I DKL QES+ +EREER ++LSL+QG
Sbjct: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQG 175
Score = 187 bits (474), Expect = 3e-47
Identities = 108/223 (48%), Positives = 135/223 (60%), Gaps = 22/223 (9%)
Query: 177 VPESPEARKESDQACGKMDTVDIANNSTLGKPKRKRRKKKGHGWSRMGTRTQKNNQQNDN 236
VP S EAR ES QA MDT+D+ NNSTL K KRRKK+ H R++ N Q
Sbjct: 498 VPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRH-------RSKVNGLQRGR 550
Query: 237 SKADGQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKHKDETV 296
K K +N K + K R ++RG+ +++ P KR R R R KDE +
Sbjct: 551 KKD-----RPRKHLTLNNK-VQKKRWQQRGR------KANTRPLKRRRKRGPRIPKDENI 598
Query: 297 DFQAPLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSKNWRLS 356
+F+ LPVTCG VKG L+KE+ +QGT KCIQ+ED KWFTP EFEI+G SKNW+LS
Sbjct: 599 NFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLS 658
Query: 357 VRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPC 399
+RCGG+ L+ LME LP PP KKRIL+S NN+ VDPC
Sbjct: 659 IRCGGYTLKVLMENKFLPEPPS---TRKKRILESHNNTLVDPC 698
>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
Length = 689
Score = 264 bits (675), Expect = 1e-70
Identities = 157/406 (38%), Positives = 210/406 (51%), Gaps = 71/406 (17%)
Query: 182 EARKESDQACGKMDTVDIANNSTLGK-----PKRKRRKKKG-----HGWSRMGTRTQKNN 231
+AR E + + +D + GK P RR +G HG K
Sbjct: 337 KARTECARKSRSEEIIDGTSEMNEGKRSQKTPSTPRRVTQGAASPGHGIQEKLQVVDKVT 396
Query: 232 QQNDNSKADGQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKH 291
Q+ D+S + +++ +KA K K R +++ K + S R QK + R K
Sbjct: 397 QRKDDSTWNSEVMMRVQKART--KCARKSRSKEKKKEKDICSSSKRRFQKNIHRRG--KP 452
Query: 292 KDETVDFQAPLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSK 351
K +TVDF LPVTCG KGIL+K+K++ G+ KCI+ EDG W TP EFE++G +K
Sbjct: 453 KSDTVDFHCSKLPVTCGEAKGILYKKKMKHGSSVKCIRNEDGTWLTPNEFEVEGKGRNAK 512
Query: 352 NWRLSVRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRD 411
NW+ ++RC G L L++ +N DECEVC
Sbjct: 513 NWKRNIRCEGMTLGELLKR------------------------------KNSDECEVCCQ 542
Query: 412 GGELFCCDTCSRVFHEDCHIPPVESEKTPWNCIFCRMKESPGSQQCCQESEVLERQMCPE 471
GG+L CC TC RVFHEDCHIPPVE+++ W+C FCRMK S GSQQC S+ LERQM P+
Sbjct: 543 GGQLLCCGTCPRVFHEDCHIPPVEAKRMLWSCTFCRMKRSSGSQQCHHVSKTLERQMQPQ 602
Query: 472 EQLKCEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEG 531
+QL IR+ + +E MWLD +K+RL Y V
Sbjct: 603 DQL--------------------------IRDYGEPFQEAMWLDLVKERLITEMY-TVAW 635
Query: 532 FVQDMRLIFQNHRASYKYKDFGQMGLRLEAEFEKDFKEVFAIQETN 577
FV+DMRL+F+NH+ YK DFGQ+GL LEAEFEKD K+V E N
Sbjct: 636 FVRDMRLMFRNHKTFYKASDFGQVGLDLEAEFEKDLKDVLGFHEAN 681
Score = 119 bits (298), Expect = 8e-27
Identities = 56/109 (51%), Positives = 82/109 (75%), Gaps = 5/109 (4%)
Query: 37 LFTEDQDVDEGLVYDTVFKHFKRHKLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSC 96
+FT + ++E L F+HF KL I+ AI K FPF EGL D +IT +M+ +S ++C
Sbjct: 1 MFTMTRAMEEAL-----FQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEAC 55
Query: 97 RNLVPVQRVVYNVLSELEKTFNLSVLEALFSEVNMQEYPDLIHIYKSFK 145
RNL+PV RVV+N+L++LE+TFNLS+L LFS++N++EYP+L+ IY+SFK
Sbjct: 56 RNLIPVSRVVHNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFK 104
>gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens]
Length = 549
Score = 119 bits (298), Expect = 8e-27
Identities = 56/109 (51%), Positives = 82/109 (75%), Gaps = 5/109 (4%)
Query: 37 LFTEDQDVDEGLVYDTVFKHFKRHKLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSC 96
+FT + ++E L F+HF KL I+ AI K FPF EGL D +IT +M+ +S ++C
Sbjct: 1 MFTMTRAMEEAL-----FQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEAC 55
Query: 97 RNLVPVQRVVYNVLSELEKTFNLSVLEALFSEVNMQEYPDLIHIYKSFK 145
RNL+PV RVV+N+L++LE+TFNLS+L LFS++N++EYP+L+ IY+SFK
Sbjct: 56 RNLIPVSRVVHNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFK 104
Score = 118 bits (296), Expect = 1e-26
Identities = 78/220 (35%), Positives = 112/220 (50%), Gaps = 17/220 (7%)
Query: 182 EARKESDQACGKMDTVDIANNSTLGK-----PKRKRRKKKG-----HGWSRMGTRTQKNN 231
+AR E + + +D + GK P RR +G HG K
Sbjct: 337 KARTECARKSRSEEIIDGTSEMNEGKRSQKTPSTPRRVTQGAASPGHGIQEKLQVVDKVT 396
Query: 232 QQNDNSKADGQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKH 291
Q+ D+S + +++ +KA K K R +++ K + S R QK + R K
Sbjct: 397 QRKDDSTWNSEVMMRVQKART--KCARKSRSKEKKKEKDICSSSKRRFQKNIHRRG--KP 452
Query: 292 KDETVDFQAPLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSK 351
K +TVDF LPVTCG KGIL+K+K++ G+ KCI+ EDG W TP EFE++G +K
Sbjct: 453 KSDTVDFHCSKLPVTCGEAKGILYKKKMKHGSSVKCIRNEDGTWLTPNEFEVEGKGRNAK 512
Query: 352 NWRLSVRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQ 391
NW+ ++RC G L L++ G L PPRI N KR L S+
Sbjct: 513 NWKRNIRCEGMTLGELLKSGLLLCPPRI---NLKRELNSK 549
>gi|52487277 SP140 nuclear body protein isoform 2 [Homo sapiens]
Length = 172
Score = 117 bits (294), Expect = 2e-26
Identities = 57/107 (53%), Positives = 80/107 (74%)
Query: 40 EDQDVDEGLVYDTVFKHFKRHKLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNL 99
E Q++ E + + +F+ F+ +K+EI++AI + FPFL GLRDR I+ +M+E +++ RNL
Sbjct: 29 EGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFLMGLRDRSFISEQMYEHFQEAFRNL 88
Query: 100 VPVQRVVYNVLSELEKTFNLSVLEALFSEVNMQEYPDLIHIYKSFKN 146
VPV RV+Y VLSELEKTF S LEALFS +N+ YPDL IY+SF+N
Sbjct: 89 VPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYPDLNEIYRSFQN 135
>gi|74027251 tripartite motif-containing 33 protein isoform beta [Homo
sapiens]
Length = 1110
Score = 106 bits (265), Expect = 5e-23
Identities = 90/292 (30%), Positives = 130/292 (44%), Gaps = 43/292 (14%)
Query: 308 GGVKGILHKEKLEQGTLAKCIQTEDGKWFTP-------MEFEIKG-----GYARSKNWRL 355
GGVK +EK E G + C+ + TP +E E+ + + + +
Sbjct: 790 GGVK----QEKTEDGRRSACMLSSPESSLTPPLSTNLHLESELDALASLENHVKIEPADM 845
Query: 356 SVRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRDGGEL 415
+ C L L+ S P R RI NN DP N D C VC++GG+L
Sbjct: 846 NESCKQSGLSSLVNGKS---PIRSLMHRSARIGGDGNNKDDDP---NEDWCAVCQNGGDL 899
Query: 416 FCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCRMKESPGSQQCCQESEVLER-----QMC 469
CC+ C +VFH CH+P + S W C FCR P + C + ++ +
Sbjct: 900 LCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQHSKKGKTAQGLS 959
Query: 470 PEEQLKCEFLLLKVYCCSESSFF-----AKIPYYYYIREACQGLKEPMWLDKIKKRL--- 521
P +Q KCE LLL +YC S F A IP YY I +K+PM L +KK+L
Sbjct: 960 PVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKI------IKKPMDLSTVKKKLQKK 1013
Query: 522 NEHGYPQVEGFVQDMRLIFQN-HRASYKYKDFGQMGLRLEAEFEKDFKEVFA 572
+ Y + FV D+RLIF+N R + + Q G + FE E+++
Sbjct: 1014 HSQHYQIPDDFVADVRLIFKNCERFNEADSEVAQAGKAVALYFEDKLTEIYS 1065
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 103 bits (257), Expect = 4e-22
Identities = 90/296 (30%), Positives = 131/296 (44%), Gaps = 49/296 (16%)
Query: 308 GGVKGILHKEKLEQGTLAKCIQTEDGKWFTP-------MEFEIKG-----GYARSKNWRL 355
GGVK +EK E G + C+ + TP +E E+ + + + +
Sbjct: 790 GGVK----QEKTEDGRRSACMLSSPESSLTPPLSTNLHLESELDALASLENHVKIEPADM 845
Query: 356 SVRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRDGGEL 415
+ C L L+ S P R RI NN DP N D C VC++GG+L
Sbjct: 846 NESCKQSGLSSLVNGKS---PIRSLMHRSARIGGDGNNKDDDP---NEDWCAVCQNGGDL 899
Query: 416 FCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCRMKESPGSQQCCQESEVLER-----QMC 469
CC+ C +VFH CH+P + S W C FCR P + C + ++ +
Sbjct: 900 LCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQHSKKGKTAQGLS 959
Query: 470 PEEQLKCEFLLLKVYCCSESSFF-----AKIPYYYYIREACQGLKEPMWLDKIKKRL--- 521
P +Q KCE LLL +YC S F A IP YY I +K+PM L +KK+L
Sbjct: 960 PVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKI------IKKPMDLSTVKKKLQKK 1013
Query: 522 NEHGYPQVEGFVQDMRLIFQN-------HRASYKYKDFGQMGLRLEAEFEKDFKEV 570
+ Y + FV D+RLIF+N + Y D ++ L+ ++E + K V
Sbjct: 1014 HSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAV 1069
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 102 bits (255), Expect = 7e-22
Identities = 71/188 (37%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 402 NLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCRMKESPGSQQCC-- 458
N D C VC++GGEL CC+ C +VFH CH+P + + W C FCR P + C
Sbjct: 825 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 884
Query: 459 ----QESEVLER--QMCPEEQLKCEFLLLKVYCCSESSFF-----AKIPYYYYIREACQG 507
E + E ++ P ++ KCE LLL +YC S F +P YY I
Sbjct: 885 PSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKI------ 938
Query: 508 LKEPMWLDKIKKRLNE--HGYPQVEGFVQDMRLIFQNHRASYKYKD--FGQMGLRLEAEF 563
+K PM L IKKRL E Y + E FV D RLIFQN A + D G++LE F
Sbjct: 939 IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN-CAEFNEPDSEVANAGIKLENYF 997
Query: 564 EKDFKEVF 571
E+ K ++
Sbjct: 998 EELLKNLY 1005
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 102 bits (255), Expect = 7e-22
Identities = 71/188 (37%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 402 NLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCRMKESPGSQQCC-- 458
N D C VC++GGEL CC+ C +VFH CH+P + + W C FCR P + C
Sbjct: 791 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 850
Query: 459 ----QESEVLER--QMCPEEQLKCEFLLLKVYCCSESSFF-----AKIPYYYYIREACQG 507
E + E ++ P ++ KCE LLL +YC S F +P YY I
Sbjct: 851 PSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKI------ 904
Query: 508 LKEPMWLDKIKKRLNE--HGYPQVEGFVQDMRLIFQNHRASYKYKD--FGQMGLRLEAEF 563
+K PM L IKKRL E Y + E FV D RLIFQN A + D G++LE F
Sbjct: 905 IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN-CAEFNEPDSEVANAGIKLENYF 963
Query: 564 EKDFKEVF 571
E+ K ++
Sbjct: 964 EELLKNLY 971
>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
Length = 1216
Score = 90.1 bits (222), Expect = 5e-18
Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 12/183 (6%)
Query: 400 MRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCRMKESPGSQQCC 458
+ N D C VC +GGEL CCD C +VFH CH+P + S W C CR P + C
Sbjct: 967 IENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDC 1026
Query: 459 QESEVLERQMCPE------EQLKCEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEPM 512
+ + + M +Q KCE L+L + CC+ S P R Q +K PM
Sbjct: 1027 ENACYNQPGMRASPGLSMYDQKKCEKLVLSL-CCNNLSLPFHEPVSPLARHYYQIIKRPM 1085
Query: 513 WLDKIKKRLNEHG---YPQVEGFVQDMRLIFQN-HRASYKYKDFGQMGLRLEAEFEKDFK 568
L I+++L + Y E V D+RL+F N + +Y + + G LE FE K
Sbjct: 1086 DLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLK 1145
Query: 569 EVF 571
E++
Sbjct: 1146 EIY 1148
>gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]
Length = 545
Score = 79.3 bits (194), Expect = 9e-15
Identities = 56/160 (35%), Positives = 74/160 (46%), Gaps = 34/160 (21%)
Query: 303 LPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGG-------------YAR 349
+P G V+GIL ++ E G KCIQ G+++TP +FE G R
Sbjct: 199 VPGARGAVEGILIQQVFESGGSKKCIQV-GGEFYTPSKFEDSGSGKNKARSSSGPKPLVR 257
Query: 350 SKNWRLSVRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCM--RNLDECE 407
+K + + GG RL ++GS+P P + DP + +N DEC
Sbjct: 258 AKGAQGAAPGGGEA--RLGQQGSVPAPLAL---------------PSDPQLHQKNEDECA 300
Query: 408 VCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFC 446
VCRDGGEL CCD C R FH C PP+ E W C C
Sbjct: 301 VCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 340
Score = 34.3 bits (77), Expect = 0.32
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 406 CEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTPWNCIFCR 447
C VC DG ++ C C+ FH CH P S P + CR
Sbjct: 434 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSR--PGTGLRCR 473
>gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
Length = 348
Score = 63.5 bits (153), Expect = 5e-10
Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 399 CMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFC 446
C +N DEC VCRDGGEL CCD C R FH C PP+ E W C C
Sbjct: 95 CQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
Score = 34.3 bits (77), Expect = 0.32
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 406 CEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTPWNCIFCR 447
C VC DG ++ C C+ FH CH P S P + CR
Sbjct: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSR--PGTGLRCR 276
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 63.2 bits (152), Expect = 6e-10
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 303 LPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSKNWRLSVRCGGW 362
LPV C + G L+K +L G +CI+ + W++P EFE G A SK+W+ S+R G
Sbjct: 203 LPVRCRNISGTLYKNRLGSGGRGRCIKQGEN-WYSPTEFEAMAGRASSKDWKRSIRYAGR 261
Query: 363 PLRRLMEEGSLPNP 376
PL+ L+++G L NP
Sbjct: 262 PLQCLIQDGIL-NP 274
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 62.8 bits (151), Expect = 8e-10
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 406 CEVCRDGGELFCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCR----MKESPGSQQC-CQ 459
C VC+ G+L C+ C FH DCH+P ++ W+C C +KE GS
Sbjct: 628 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLSLDGA 687
Query: 460 ESEVLERQMCPEEQLKCEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEP---MWLDK 516
+S + ++ P Q KCE +LL ++C P + ++ L +P + L
Sbjct: 688 DSTGVVAKLSPANQRKCERVLLALFCHEPCR-----PLHQLATDSTFSLDQPGGTLDLTL 742
Query: 517 IKKRLNEH---GYPQVEGFVQDMRLIFQNHRASYKYKDFGQMGLRLEAEFEKDFKEVF 571
I+ RL E Y + F QD+ +F+ + K Q + L+ FE E F
Sbjct: 743 IRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMNEAF 800
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 57.0 bits (136), Expect = 5e-08
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 404 DECEVCRDGGELFCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCRMKESPGSQQCCQE 460
D C VC G+L CC+TCS V+H +C PP+E + W C C + PG C E
Sbjct: 391 DHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAE 448
Score = 31.2 bits (69), Expect = 2.7
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 496 PYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQDMRLIFQNHRASYKYKD--FG 553
P YY + +KEPM L +++R+ Y ++ FV DM IF N R Y D F
Sbjct: 2819 PDYYGV------IKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCR-YYNPSDSPFY 2871
Query: 554 QMGLRLEAEFEKDFKEVFAIQETN 577
Q LE+ F + K A + N
Sbjct: 2872 QCAEVLESFFVQKLKGFKASRSHN 2895
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 57.0 bits (136), Expect = 5e-08
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 404 DECEVCRDGGELFCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCRMKESPGSQQCCQE 460
D C VC G+L CC+TCS V+H +C PP+E + W C C + PG C E
Sbjct: 391 DHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAE 448
Score = 31.2 bits (69), Expect = 2.7
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 496 PYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQDMRLIFQNHRASYKYKD--FG 553
P YY + +KEPM L +++R+ Y ++ FV DM IF N R Y D F
Sbjct: 2836 PDYYGV------IKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCR-YYNPSDSPFY 2888
Query: 554 QMGLRLEAEFEKDFKEVFAIQETN 577
Q LE+ F + K A + N
Sbjct: 2889 QCAEVLESFFVQKLKGFKASRSHN 2912
>gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens]
Length = 1004
Score = 54.7 bits (130), Expect = 2e-07
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 384 KKRILKSQNNSSVDPCMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTP--- 440
+KR K + N D C+ C++GG+L CCD C FH C PP+ E P
Sbjct: 37 EKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGE 96
Query: 441 WNCIFCRMKESPGSQQ 456
W C C ++ Q+
Sbjct: 97 WMCHRCTVRRKKREQK 112
>gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens]
Length = 704
Score = 54.7 bits (130), Expect = 2e-07
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 384 KKRILKSQNNSSVDPCMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTP--- 440
+KR K + N D C+ C++GG+L CCD C FH C PP+ E P
Sbjct: 37 EKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGE 96
Query: 441 WNCIFCRMKESPGSQQ 456
W C C ++ Q+
Sbjct: 97 WMCHRCTVRRKKREQK 112
>gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]
Length = 634
Score = 52.8 bits (125), Expect = 9e-07
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 404 DECEVCRDGGELFCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCR 447
D C VCR G+L CDTCSRV+H DC PP+++ K W C C+
Sbjct: 443 DFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 487
>gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]
Length = 680
Score = 52.8 bits (125), Expect = 9e-07
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 404 DECEVCRDGGELFCCDTCSRVFHEDCHIPPVES-EKTPWNCIFCR 447
D C VCR G+L CDTCSRV+H DC PP+++ K W C C+
Sbjct: 489 DFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 533
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 51.2 bits (121), Expect = 3e-06
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 402 NLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFCRMKESPGSQQ 456
+++ C VC+DGGEL CCDTC +H C PP+ E W C C G Q
Sbjct: 448 HMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQ 503
Score = 49.3 bits (116), Expect = 1e-05
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 404 DECEVCRDGGELFCCDTCSRVFHEDCHIPPVE-SEKTPWNCIFC 446
D CEVC+ GGE+ CDTC R +H C P +E + + W+C C
Sbjct: 371 DYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 414
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 51.2 bits (121), Expect = 3e-06
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 382 RNKKRILKSQNNSSVDPCMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTP- 440
R KK+ + + D + D CEVC+ GGE+ CDTC R +H C P E EK P
Sbjct: 326 RRKKKRIDDGDGYETD----HQDYCEVCQQGGEIILCDTCPRAYHLVCLDP--ELEKAPE 379
Query: 441 --WNCIFCRMKESPGSQ-QCCQESEVLERQMCPEEQ 473
W+C C E G Q + + + E C EE+
Sbjct: 380 GKWSCPHC---EKEGIQWEPKDDDDEEEEGGCEEEE 412
Score = 49.3 bits (116), Expect = 1e-05
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 402 NLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFCRMKESPGSQQ 456
+++ C VC+DGGEL CCD C +H C PP+ E W C C G Q
Sbjct: 415 HMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQ 470
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 404 DECEVCRDGGELFCCDTCSRVFHEDCHIPPVE-SEKTPWNCIFCRMKESPGSQQCCQESE 462
D CEVC+ GGE+ CDTC R +H C P ++ + + W+C C E G Q +E E
Sbjct: 380 DYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC---EKEGVQWEAKEEE 436
Score = 47.4 bits (111), Expect = 4e-05
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 402 NLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFC 446
+++ C VC+DGGEL CCD C +H C PP+ + W C C
Sbjct: 455 HMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRC 500
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 404 DECEVCRDGGELFCCDTCSRVFHEDCHIPPVE-SEKTPWNCIFCRMKESPGSQQCCQESE 462
D CEVC+ GGE+ CDTC R +H C P ++ + + W+C C E G Q +E E
Sbjct: 380 DYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC---EKEGVQWEAKEEE 436
Score = 47.4 bits (111), Expect = 4e-05
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 402 NLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFC 446
+++ C VC+DGGEL CCD C +H C PP+ + W C C
Sbjct: 455 HMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRC 500
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 404 DECEVCRDGGELFCCDTCSRVFHEDCHIPPVE-SEKTPWNCIFCRMKESPGSQQCCQESE 462
D CEVC+ GGE+ CDTC R +H C P ++ + + W+C C E G Q +E E
Sbjct: 439 DYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC---EKEGVQWEAKEEE 495
Score = 47.4 bits (111), Expect = 4e-05
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 402 NLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFC 446
+++ C VC+DGGEL CCD C +H C PP+ + W C C
Sbjct: 514 HMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRC 559
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 47.4 bits (111), Expect = 4e-05
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 10/163 (6%)
Query: 382 RNKKRILKSQNNSSVDPCMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTPW 441
+ KK L + NN D RN C VC G++ CC+ C RV+H C + + W
Sbjct: 64 KKKKPGLLNSNNKEQDG--RNDFYCWVCHREGQVLCCELCPRVYHAKC-LRLTSEPEGDW 120
Query: 442 NCIFCRMKESPGSQQCCQESEVLERQMCPEEQLK--CEFLLLKVYCCSESSFFAKIPYYY 499
C C + C E++ M EQL +F + K+ +F +P
Sbjct: 121 FCPECEKI----TVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQ 176
Query: 500 YIREACQGLKEPMWLDKIKKRLNEHGYPQVEGFVQDMRLIFQN 542
+ + + + PM L ++K + Y E F+ D + I N
Sbjct: 177 H-PDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHN 218
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 45.4 bits (106), Expect = 1e-04
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 402 NLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTPWNCIFCRMKESP 452
N+ C VC +GG L CCD+C FH +C ++ + W C C+ + P
Sbjct: 1437 NVSWCFVCSEGGSLLCCDSCPAAFHREC--LNIDIPEGNWYCNDCKAGKKP 1485
Score = 34.7 bits (78), Expect = 0.25
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 404 DECEVCRDGGELFCCDT--CSRVFHEDC---HIPPVESEKTPWN-CIFCRMKESPGSQQC 457
DEC C D G+L C C +V+H DC P + PW+ C C + + + C
Sbjct: 1850 DECFSCGDAGQLVSCKKPGCPKVYHADCLNLTKRPAGKWECPWHQCDICGKEAASFCEMC 1909
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,432,482
Number of Sequences: 37866
Number of extensions: 1125479
Number of successful extensions: 4813
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 4344
Number of HSP's gapped (non-prelim): 545
length of query: 580
length of database: 18,247,518
effective HSP length: 108
effective length of query: 472
effective length of database: 14,157,990
effective search space: 6682571280
effective search space used: 6682571280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.