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Search of human proteins with 55770830
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55770830 chromobox homolog 4 [Homo sapiens]
(560 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55770830 chromobox homolog 4 [Homo sapiens] 1165 0.0
gi|28372505 chromobox homolog 7 [Homo sapiens] 132 8e-31
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 129 5e-30
gi|46852392 chromobox homolog 6 [Homo sapiens] 126 5e-29
gi|10190682 chromobox homolog 8 [Homo sapiens] 124 2e-28
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 111 2e-24
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 61 2e-09
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 61 2e-09
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 61 2e-09
gi|15082258 chromobox homolog 3 [Homo sapiens] 61 3e-09
gi|20544151 chromobox homolog 3 [Homo sapiens] 61 3e-09
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 59 9e-09
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 59 9e-09
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 55 2e-07
gi|61966923 forkhead box B2 [Homo sapiens] 52 1e-06
gi|119220564 one cut domain, family member 2 [Homo sapiens] 52 1e-06
gi|7710129 LIM domain only 6 [Homo sapiens] 50 5e-06
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 50 7e-06
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 50 7e-06
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 50 7e-06
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 50 7e-06
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 50 7e-06
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 50 7e-06
gi|56550035 colon carcinoma related protein [Homo sapiens] 49 9e-06
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 49 9e-06
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 49 2e-05
gi|32307177 forkhead box G1 [Homo sapiens] 49 2e-05
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 48 2e-05
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 48 2e-05
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 48 2e-05
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 1165 bits (3015), Expect = 0.0
Identities = 560/560 (100%), Positives = 560/560 (100%)
Query: 1 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR 60
MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
Sbjct: 1 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR 60
Query: 61 ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY 120
ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY
Sbjct: 61 ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY 120
Query: 121 ELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEA 180
ELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEA
Sbjct: 121 ELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEA 180
Query: 181 PSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMPAPKEA 240
PSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMPAPKEA
Sbjct: 181 PSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMPAPKEA 240
Query: 241 VTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPSHKKRAAD 300
VTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPSHKKRAAD
Sbjct: 241 VTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPSHKKRAAD 300
Query: 301 ERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPL 360
ERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPL
Sbjct: 301 ERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPL 360
Query: 361 QLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE 420
QLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE
Sbjct: 361 QLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE 420
Query: 421 REPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT 480
REPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT
Sbjct: 421 REPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT 480
Query: 481 RSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNI 540
RSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNI
Sbjct: 481 RSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNI 540
Query: 541 IITDVTANCLTVTFKEYVTV 560
IITDVTANCLTVTFKEYVTV
Sbjct: 541 IITDVTANCLTVTFKEYVTV 560
>gi|28372505 chromobox homolog 7 [Homo sapiens]
Length = 251
Score = 132 bits (332), Expect = 8e-31
Identities = 57/82 (69%), Positives = 73/82 (89%)
Query: 1 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR 60
MEL A+GE VFAVESI KKR+RKG+VEYLVKW+GW PKY+TWEPEE+ILDPRL++A++ +
Sbjct: 1 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 60
Query: 61 ERQEQLMGYRKRGPKPKPLVVQ 82
E +++ GYRKRGPKPK L++Q
Sbjct: 61 EERDRASGYRKRGPKPKRLLLQ 82
Score = 35.0 bits (79), Expect = 0.18
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 496 ETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFF--GNIIITDVTANCLTVT 553
E PA + A P A+ P EA + AE + P + +TD+TAN +TVT
Sbjct: 176 EPPAPDVLQAAGEWEPA--AQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVT 233
Query: 554 FKE 556
F+E
Sbjct: 234 FRE 236
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 129 bits (325), Expect = 5e-30
Identities = 169/599 (28%), Positives = 243/599 (40%), Gaps = 120/599 (20%)
Query: 2 ELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRE 61
EL +VGE VFA E I KR+RKG++EYLVKWRGWS K+N+WEPEENILDPRLL+AFQ +E
Sbjct: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
Query: 62 RQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKL---DLGAQGKGQGH 118
++++ RKRG +P+ R LT + SS R+KL D ++ K
Sbjct: 63 HEKEVQN-RKRGKRPR----------GRPRKLTAM--SSCSRRSKLKEPDAPSKSKSSSS 109
Query: 119 QYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYD-LQYQGGH 177
S + + K P G+ + + KK P++ D ++ + G
Sbjct: 110 SSSSTSSSSSSDEEDDSDLDAKRGPRGRE---THPVPQKKAQILVAKPELKDPIRKKRGR 166
Query: 178 KEAP----------------SPTCPDLGAKSH--PPDKWAQGAGAKGYLGAVKPLAGAAG 219
K P DLGA + PP A AG L A+K A A
Sbjct: 167 KPLPPEQKATRRPVSLAKVLKTARKDLGAPASKLPPPLSAPVAG----LAALK--AHAKE 220
Query: 220 APGKGSEKGPPNGMMPAPKEAVTGNGIGG---KMKIVKNKNKNGRIVIVMSKYMENGMQA 276
A G S P + K + G GG + IV N+ + + + QA
Sbjct: 221 ACGGPSAMATPENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQA 280
Query: 277 VKIKSGEVAEGEARSPSHKKRAADERHPPADRTFK-KAAGAEEKKV---EAPPKRREEEV 332
K G + + R+ ++ PP + K + GA E+KV PP
Sbjct: 281 TN-KCGLGLDLKVRT----QKGELGMSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASR 335
Query: 333 SGVSDPQPQDAGSRKLSPTKEAFGEQPLQLTTKPD------LLAWDPARNTHPPSHHPHP 386
P PQ A +++LS Q L L + + LLA P+ +P P
Sbjct: 336 VPAGCPGPQPAPTQELS-------LQVLDLQSVKNGMPGVGLLARHATATKGVPATNPAP 388
Query: 387 HPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTARSISTPTCLGGSPAAE 446
G L + + E +L +R+++ PT PA++
Sbjct: 389 ------------GKGTGSGLIGASGATMPTDTSKSE----KLASRAVAPPT-----PASK 427
Query: 447 RPADLPPAAALPQPEVILLDSDLDEPIDLRCVKTRSE--AGEPPSSLQVKPETPASAAVA 504
R D +A P + P + R T E AGE SS P+
Sbjct: 428 R--DCVKGSATPSGQ-----ESRTAPGEARKAATLPEMSAGEESSSSDSDPD-------- 472
Query: 505 VAAAAAPTTTAEKPPAEAQD----EPAESLSEFKPFFGNIIITDVTANCLTVTFKEYVT 559
+A+P +T + P Q +P SL E ++ +TDVTAN +TVT KE T
Sbjct: 473 ---SASPPSTGQNPSVSVQTSQDWKPTRSLIE------HVFVTDVTANLITVTVKESPT 522
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 126 bits (317), Expect = 5e-29
Identities = 70/150 (46%), Positives = 98/150 (65%), Gaps = 10/150 (6%)
Query: 1 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR 60
MEL AVGE VFA ESI K+RIRKGR+EYLVKW+GW+ KY+TWEPEENILD RL+ AF+ +
Sbjct: 1 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK 60
Query: 61 ERQEQLMGYRKRGPKPKPLVVQVPTFA---RRSNVLTGLQDSSTDNRAKLDLGAQGKGQG 117
ER+ +L G +KRGPKPK +++ A R S+V ++ S++ + KL A
Sbjct: 61 ERERELYGPKKRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSA----AV 116
Query: 118 HQYELNSKKHHQYQPHSKERAGKPPPPGKS 147
H+ + + ++ H+ S+ +P P G S
Sbjct: 117 HRLKKDIRRCHRM---SRRPLPRPDPQGGS 143
Score = 51.6 bits (122), Expect = 2e-06
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 430 ARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDL---DEPIDLRCVKTRSEAGE 486
ARS + C +P + P D PP PE + + E +DL
Sbjct: 270 ARSSGSSGCPSPTPQSSDPDDTPPKLL---PETVSPSAPSWREPEVLDLSL--------- 317
Query: 487 PPSSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNIIITDVT 546
PP S P V AA AP T E A ++ E + E P N+++TDVT
Sbjct: 318 PPESAATSKRAPPE--VTAAAGPAPPTAPEPAGASSEPEAGDWRPEMSPC-SNVVVTDVT 374
Query: 547 ANCLTVTFKEY 557
+N LTVT KE+
Sbjct: 375 SNLLTVTIKEF 385
>gi|10190682 chromobox homolog 8 [Homo sapiens]
Length = 389
Score = 124 bits (312), Expect = 2e-28
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 15/128 (11%)
Query: 1 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR 60
MEL AVGE VFA E++ K+RIRKGR+EYLVKW+GWS KY+TWEPEENILD RLL AF+ R
Sbjct: 1 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 60
Query: 61 ERQEQLMGYRKRGPKPKPLVV------QVPTFARRSNVLTGL---------QDSSTDNRA 105
ER+ +L G +KRGPKPK ++ + T+ RS+ G+ QD ++ +RA
Sbjct: 61 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRA 120
Query: 106 KLDLGAQG 113
+ L G
Sbjct: 121 REGLRNMG 128
Score = 32.3 bits (72), Expect = 1.2
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 506 AAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGN---IIITDVTANCLTVTFKE 556
A P+ A P A +P E + P N +++TDVT+N LTVT KE
Sbjct: 326 AQGGRPSLIARIPVARILGDPEEE--SWSPSLTNLEKVVVTDVTSNFLTVTIKE 377
>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
Length = 211
Score = 111 bits (278), Expect = 2e-24
Identities = 57/116 (49%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 2 ELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRE 61
EL +VGE VFA E I KR+RKG++EYLVKWRGWS K+N+WEPEENILDPRLL+AFQ +E
Sbjct: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
Query: 62 RQEQLMGYRKRGPKPK---PLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGK 114
++++ RKRG +P+ + + + +RRS + G D ++ LG G+
Sbjct: 63 HEKEVQN-RKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHPLGVGGR 117
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 61.2 bits (147), Expect = 2e-09
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLM 67
E + VE + +R+ KG+VEYL+KW+G+S ++NTWEPE+N+ P L+ F + ++
Sbjct: 17 EEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK---- 72
Query: 68 GYRKRGPKPKP 78
K G KP
Sbjct: 73 --MKEGENNKP 81
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 61.2 bits (147), Expect = 2e-09
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLM 67
E + VE + +R+ KG+VEYL+KW+G+S ++NTWEPE+N+ P L+ F + ++
Sbjct: 17 EEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK---- 72
Query: 68 GYRKRGPKPKP 78
K G KP
Sbjct: 73 --MKEGENNKP 81
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 61.2 bits (147), Expect = 2e-09
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLM 67
E + VE + +R+ KG+VEYL+KW+G+S ++NTWEPE+N+ P L+ F + ++
Sbjct: 17 EEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK---- 72
Query: 68 GYRKRGPKPKP 78
K G KP
Sbjct: 73 --MKEGENNKP 81
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 60.8 bits (146), Expect = 3e-09
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 11 FAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLMGYR 70
F VE + +R+ G+VEY +KW+G++ NTWEPEEN+ P L+ AF N Q G
Sbjct: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN----SQKAGKE 85
Query: 71 KRGPKPKPL 79
K G K K L
Sbjct: 86 KDGTKRKSL 94
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 60.8 bits (146), Expect = 3e-09
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 11 FAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLMGYR 70
F VE + +R+ G+VEY +KW+G++ NTWEPEEN+ P L+ AF N Q G
Sbjct: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN----SQKAGKE 85
Query: 71 KRGPKPKPL 79
K G K K L
Sbjct: 86 KDGTKRKSL 94
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 59.3 bits (142), Expect = 9e-09
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRER 62
E + VE + +R+ KG+VEYL+KW+G+S + NTWEPEEN+ P L+ F ++
Sbjct: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 59.3 bits (142), Expect = 9e-09
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRER 62
E + VE + +R+ KG+VEYL+KW+G+S + NTWEPEEN+ P L+ F ++
Sbjct: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 54.7 bits (130), Expect = 2e-07
Identities = 50/184 (27%), Positives = 70/184 (38%), Gaps = 22/184 (11%)
Query: 357 EQPLQLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVG----LNLSHVRKR 412
+QP P P PP HP HP H HHHHHHH +V + +S + R
Sbjct: 599 QQPPPQHQPPHQPPHQPPPQHQPPPQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFR 658
Query: 413 -----CLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDS 467
+ R C +R R +T + P + P + L E+ + S
Sbjct: 659 PHVQTAQPQASSSRMQCPQRQGLRHNTTSQNVSKRPMQQMQPTAPRNSNL--RELPIAPS 716
Query: 468 DLDEPIDLRCVKTRSEAGEPPSSLQVKP---ETPASAAVAVAAAAAPTTTAEKPPAEAQD 524
+ E RC T S QVKP +P S AVA + ++ T + PA
Sbjct: 717 HVIEMSSSRCSAT--------PSAQVKPIVSASPPSRAVAGSRSSQGKTEVKVKPASPVA 768
Query: 525 EPAE 528
+P E
Sbjct: 769 QPKE 772
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 52.4 bits (124), Expect = 1e-06
Identities = 20/31 (64%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 373 PARNTHPPSHHPHPHPHHHHH---HHHHHHH 400
P + HP HH HPH HHHHH HHHHHHH
Sbjct: 132 PGGHLHPHHHH-HPHHHHHHHAAAHHHHHHH 161
Score = 48.5 bits (114), Expect = 2e-05
Identities = 42/144 (29%), Positives = 53/144 (36%), Gaps = 11/144 (7%)
Query: 380 PSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTARSISTPTCL 439
P H HPH HHHH HHHHHHHA + H + P + P
Sbjct: 132 PGGHLHPH-HHHHPHHHHHHHAAAHHHHHHHP---PQPPPPPPPPPPHMVHYFHQQPPTA 187
Query: 440 GGSP--AAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKTRSEA---GEPPSSLQVK 494
P +P PP + QP+ + E + + A G Q
Sbjct: 188 PQPPPHLPSQPPQQPPQQS--QPQQPSHPGKMQEAAAVAAAAAAAAAAAVGSVGRLSQFP 245
Query: 495 PETPASAAVAVAAAAAPTTTAEKP 518
P SAA A AAAAA T+ + P
Sbjct: 246 PYGLGSAAAAAAAAAASTSGFKHP 269
Score = 31.6 bits (70), Expect = 2.0
Identities = 40/172 (23%), Positives = 55/172 (31%), Gaps = 32/172 (18%)
Query: 85 TFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQG------------HQYELNSKKHHQYQP 132
+F RR L+ T A A G G G H + ++ HH +
Sbjct: 101 SFLRRRKRFKVLRADHTHLHAGSTKSAPGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHHH 160
Query: 133 HSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEAPSPTCPDLGAKS 192
H + PPPP +Y+ + P P P H + P P ++
Sbjct: 161 HPPQPPPPPPPPPPHMVHYFH----QQPPTAPQPP--------PHLPSQPPQQPPQQSQP 208
Query: 193 HPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGS----EKGPPNGMMPAPKEA 240
P G AV A AA A GS + PP G+ A A
Sbjct: 209 QQPSH----PGKMQEAAAVAAAAAAAAAAAVGSVGRLSQFPPYGLGSAAAAA 256
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 52.0 bits (123), Expect = 1e-06
Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 363 TTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLS 407
TT L P HHPHPH HH HHHHHHHH + N+S
Sbjct: 149 TTLTPLQPLPPISTVSDKFHHPHPH-HHPHHHHHHHHQRLSGNVS 192
>gi|7710129 LIM domain only 6 [Homo sapiens]
Length = 615
Score = 50.1 bits (118), Expect = 5e-06
Identities = 45/166 (27%), Positives = 61/166 (36%), Gaps = 23/166 (13%)
Query: 313 AAGAEEKK--VEAPPKRR---EEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPLQLTTKPD 367
A G EE + P R E + V +P P+ G L P AFG Q + D
Sbjct: 419 ATGPEEPSRFLRGAPHRHSMPELGLRSVPEPPPESPGQPNLRPDDSAFGRQSTPRVSFRD 478
Query: 368 LLAWD----------PA---RNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCL 414
L + PA R PP P HHHH+HHHHH+ + +C
Sbjct: 479 PLVSEGGPRRTLSAPPAQRRRPRSPPPRAPSRRRHHHHNHHHHHNRHPSRRRHY---QCD 535
Query: 415 SETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQP 460
+ + + E C ++ S + G P LPP P P
Sbjct: 536 AGSGSDSESCSSSPSSSSSESSEDDGFFLGERIP--LPPHLCRPMP 579
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 49.7 bits (117), Expect = 7e-06
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 281 SGEVAEGEARS-PSHKKRAADERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQ 339
SG G ARS P+H+ R + F A A + + +P R++ P
Sbjct: 510 SGTSNSGRARSDPTHQHRHSGGH-------FTAAVQAMDCETHSPQVRQQF-------PA 555
Query: 340 PQDAGSRKLSPTKEAFGEQPLQLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHH 399
P + +PT+ P+Q TT P +N HH H + HHHHHHHHHH
Sbjct: 556 PLGWSGTE-APTQVTVETHPVQETT----FHVAPQQNA---LHHHHGNSSHHHHHHHHHH 607
Query: 400 HAVG 403
H G
Sbjct: 608 HHHG 611
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 49.7 bits (117), Expect = 7e-06
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 281 SGEVAEGEARS-PSHKKRAADERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQ 339
SG G ARS P+H+ R + F A A + + +P R++ P
Sbjct: 519 SGTSNSGRARSDPTHQHRHSGGH-------FTAAVQAMDCETHSPQVRQQF-------PA 564
Query: 340 PQDAGSRKLSPTKEAFGEQPLQLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHH 399
P + +PT+ P+Q TT P +N HH H + HHHHHHHHHH
Sbjct: 565 PLGWSGTE-APTQVTVETHPVQETT----FHVAPQQNA---LHHHHGNSSHHHHHHHHHH 616
Query: 400 HAVG 403
H G
Sbjct: 617 HHHG 620
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 49.7 bits (117), Expect = 7e-06
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 8 EHVFAVESI-EKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQ 65
E ++ VE I +K++ +KG+ EYLV+W+G+ + +TWEPE+++++ I NR E+
Sbjct: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEK 62
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 49.7 bits (117), Expect = 7e-06
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 380 PSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTARS-----IS 434
P+ PH HHHHH HHHHHHA L+ H ++ L++ +++ +++ + IS
Sbjct: 18 PAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPIS 77
Query: 435 TPTCLGGS 442
LGG+
Sbjct: 78 NNNSLGGA 85
Score = 38.1 bits (87), Expect = 0.022
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 23/157 (14%)
Query: 113 GKGQGHQYELNSKKHHQYQPHSKERAGKPPPPG-------KSGKYYYQLNSKKHHP--YQ 163
G GQ Q+ + +++P+ ++ G+ PP G + G Y Q N K+H Y
Sbjct: 1264 GMGQRQQFPYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQPNYKRHMDGMYG 1323
Query: 164 PDPK-----MYDLQYQGGHKEAPSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAA 218
P K MY++QY +E + G+ S P + QG Y + + + G
Sbjct: 1324 PPAKRHEGDMYNMQYSSQQQEMYNQYG---GSYSGPDRRPIQGQYPYPY--SRERMQG-- 1376
Query: 219 GAPGKGSEKGPPNGMMPAPKEAVTGNGIGGKMKIVKN 255
PG+ G P MM P ++ + G M +N
Sbjct: 1377 --PGQIQTHGIPPQMMGGPLQSSSSEGPQQNMWAARN 1411
Score = 37.0 bits (84), Expect = 0.048
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 373 PARNTHPPSHHPHPHPHH-HHHHHHH 397
P H HH H H HH HH HHHH
Sbjct: 21 PPHQQHHHHHHAHHHHHHAHHLHHHH 46
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 49.7 bits (117), Expect = 7e-06
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 380 PSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTARS-----IS 434
P+ PH HHHHH HHHHHHA L+ H ++ L++ +++ +++ + IS
Sbjct: 18 PAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPIS 77
Query: 435 TPTCLGGS 442
LGG+
Sbjct: 78 NNNSLGGA 85
Score = 38.1 bits (87), Expect = 0.022
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 23/157 (14%)
Query: 113 GKGQGHQYELNSKKHHQYQPHSKERAGKPPPPG-------KSGKYYYQLNSKKHHP--YQ 163
G GQ Q+ + +++P+ ++ G+ PP G + G Y Q N K+H Y
Sbjct: 1304 GMGQRQQFPYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQPNYKRHMDGMYG 1363
Query: 164 PDPK-----MYDLQYQGGHKEAPSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAA 218
P K MY++QY +E + G+ S P + QG Y + + + G
Sbjct: 1364 PPAKRHEGDMYNMQYSSQQQEMYNQYG---GSYSGPDRRPIQGQYPYPY--SRERMQG-- 1416
Query: 219 GAPGKGSEKGPPNGMMPAPKEAVTGNGIGGKMKIVKN 255
PG+ G P MM P ++ + G M +N
Sbjct: 1417 --PGQIQTHGIPPQMMGGPLQSSSSEGPQQNMWAARN 1451
Score = 37.0 bits (84), Expect = 0.048
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 373 PARNTHPPSHHPHPHPHH-HHHHHHH 397
P H HH H H HH HH HHHH
Sbjct: 21 PPHQQHHHHHHAHHHHHHAHHLHHHH 46
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 49.7 bits (117), Expect = 7e-06
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 380 PSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTARS-----IS 434
P+ PH HHHHH HHHHHHA L+ H ++ L++ +++ +++ + IS
Sbjct: 18 PAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPIS 77
Query: 435 TPTCLGGS 442
LGG+
Sbjct: 78 NNNSLGGA 85
Score = 38.1 bits (87), Expect = 0.022
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 23/157 (14%)
Query: 113 GKGQGHQYELNSKKHHQYQPHSKERAGKPPPPG-------KSGKYYYQLNSKKHHP--YQ 163
G GQ Q+ + +++P+ ++ G+ PP G + G Y Q N K+H Y
Sbjct: 1251 GMGQRQQFPYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQPNYKRHMDGMYG 1310
Query: 164 PDPK-----MYDLQYQGGHKEAPSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAA 218
P K MY++QY +E + G+ S P + QG Y + + + G
Sbjct: 1311 PPAKRHEGDMYNMQYSSQQQEMYNQYG---GSYSGPDRRPIQGQYPYPY--SRERMQG-- 1363
Query: 219 GAPGKGSEKGPPNGMMPAPKEAVTGNGIGGKMKIVKN 255
PG+ G P MM P ++ + G M +N
Sbjct: 1364 --PGQIQTHGIPPQMMGGPLQSSSSEGPQQNMWAARN 1398
Score = 37.0 bits (84), Expect = 0.048
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 373 PARNTHPPSHHPHPHPHH-HHHHHHH 397
P H HH H H HH HH HHHH
Sbjct: 21 PPHQQHHHHHHAHHHHHHAHHLHHHH 46
>gi|56550035 colon carcinoma related protein [Homo sapiens]
Length = 326
Score = 49.3 bits (116), Expect = 9e-06
Identities = 15/19 (78%), Positives = 15/19 (78%)
Query: 382 HHPHPHPHHHHHHHHHHHH 400
HHPH H HH H HHHHHHH
Sbjct: 230 HHPHAHMHHRHRHHHHHHH 248
Score = 42.4 bits (98), Expect = 0.001
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 383 HPHPHPHHHHHHHHHHHH 400
H HPH H HH H HHHHH
Sbjct: 229 HHHPHAHMHHRHRHHHHH 246
Score = 39.3 bits (90), Expect = 0.010
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 375 RNTHPPSHHPHPHPHHHHHHH 395
R+ HP +H H H HHHHHHH
Sbjct: 228 RHHHPHAHMHHRHRHHHHHHH 248
Score = 29.3 bits (64), Expect = 10.0
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 381 SHHPHPHPHHHHHH--------HHHHHH 400
SH + HHH H HHHHHH
Sbjct: 220 SHMHDVYMRHHHPHAHMHHRHRHHHHHH 247
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 49.3 bits (116), Expect = 9e-06
Identities = 19/30 (63%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 379 PPSHHPHPHPHHHHHHHHHHHHAVGLNLSH 408
PP HH H HHHHHHHHHHH A SH
Sbjct: 334 PPPHHHH---HHHHHHHHHHHRAQPPQQSH 360
Score = 37.7 bits (86), Expect = 0.028
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 378 HPPSHHPHPHPHHHHH-------HHHHHHHAVGLNLSHVRKRCLSET 417
H HH H H HHHH HH HHH +L + C S++
Sbjct: 337 HHHHHHHHHHHHHHHRAQPPQQSHHPPHHHRPQPHLGSFPESCSSDS 383
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 48.5 bits (114), Expect = 2e-05
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 7/26 (26%)
Query: 382 HHPHPHPHH-------HHHHHHHHHH 400
HH HPH HH HHHHHHHHHH
Sbjct: 276 HHHHPHAHHPLSQSSGHHHHHHHHHH 301
Score = 45.8 bits (107), Expect = 1e-04
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 378 HPPSHHP--HPHPHHHHHHHHHHHHAVGLNLSHVRKRCL 414
HP +HHP HHHHHHHHHH G L+ CL
Sbjct: 279 HPHAHHPLSQSSGHHHHHHHHHHQGYGGSGLAFNSADCL 317
Score = 37.7 bits (86), Expect = 0.028
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 12/37 (32%)
Query: 379 PPSHHPHPHPH------------HHHHHHHHHHHAVG 403
P S H H H HHHHHHHHHH G
Sbjct: 269 PSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHHHQGYG 305
Score = 35.0 bits (79), Expect = 0.18
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 11/37 (29%)
Query: 383 HPHPHPHH-----------HHHHHHHHHHAVGLNLSH 408
H H HPH HHHHH H HH + + H
Sbjct: 256 HSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGH 292
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 48.5 bits (114), Expect = 2e-05
Identities = 15/19 (78%), Positives = 15/19 (78%)
Query: 382 HHPHPHPHHHHHHHHHHHH 400
HH HP HHHHHHHHHHH
Sbjct: 39 HHNSHHPQHHHHHHHHHHH 57
Score = 43.5 bits (101), Expect = 5e-04
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 374 ARNTHPPSHHPHPHPHHHHHHHH 396
A + H SHHP H HHHHHHHH
Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHH 57
Score = 42.7 bits (99), Expect = 9e-04
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 366 PDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHH 398
P+ + D +H + HP HHHHHHHHHH
Sbjct: 25 PEAVQNDNHHASHGHHNSHHPQHHHHHHHHHHH 57
Score = 42.7 bits (99), Expect = 9e-04
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 372 DPARNTHPPSHHPHPHPHH--HHHHHHHHHH 400
+ +N + + H H + HH HHHHHHHHHH
Sbjct: 26 EAVQNDNHHASHGHHNSHHPQHHHHHHHHHH 56
Score = 33.9 bits (76), Expect = 0.41
Identities = 36/128 (28%), Positives = 42/128 (32%), Gaps = 25/128 (19%)
Query: 127 HHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEAPSPTCP 186
HH + H A +PPPP ++ P P P G A P
Sbjct: 51 HHHHHHHPPPPAPQPPPP-----------PQQQQPPPPPPPAPQPPQTRGAPAADDDKGP 99
Query: 187 D--LGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMP-APKEAVTG 243
L PP A GAK A G GKG G P + P P E G
Sbjct: 100 QQLLLPPPPPPPPAAALDGAK-----------ADGLGGKGEPGGGPGELAPVGPDEKEKG 148
Query: 244 NGIGGKMK 251
G GG+ K
Sbjct: 149 AGAGGEEK 156
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 48.1 bits (113), Expect = 2e-05
Identities = 16/22 (72%), Positives = 16/22 (72%)
Query: 379 PPSHHPHPHPHHHHHHHHHHHH 400
P S HPH HHH HHHHHHHH
Sbjct: 647 PHSAQTHPHHHHHPHHHHHHHH 668
Score = 43.5 bits (101), Expect = 5e-04
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 378 HPPSHHPHPHPHHHHHHHHHH 398
H HPH H H HHHHHHHH
Sbjct: 648 HSAQTHPHHHHHPHHHHHHHH 668
Score = 32.7 bits (73), Expect = 0.90
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 377 THPPSHHPHPHPHHHHH 393
THP HH H HHHHH
Sbjct: 652 THPHHHHHPHHHHHHHH 668
Score = 29.3 bits (64), Expect = 10.0
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 113 GKGQGHQYELNSKKHHQYQPHSKERAGKPPPPGKS----GKYYYQLNSKKHHPYQPDP 166
G G + + HH + PH PP P + S++HHP P P
Sbjct: 641 GASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPP 698
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 48.1 bits (113), Expect = 2e-05
Identities = 16/22 (72%), Positives = 16/22 (72%)
Query: 379 PPSHHPHPHPHHHHHHHHHHHH 400
P S HPH HHH HHHHHHHH
Sbjct: 647 PHSAQTHPHHHHHPHHHHHHHH 668
Score = 43.5 bits (101), Expect = 5e-04
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 378 HPPSHHPHPHPHHHHHHHHHH 398
H HPH H H HHHHHHHH
Sbjct: 648 HSAQTHPHHHHHPHHHHHHHH 668
Score = 32.7 bits (73), Expect = 0.90
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 377 THPPSHHPHPHPHHHHH 393
THP HH H HHHHH
Sbjct: 652 THPHHHHHPHHHHHHHH 668
Score = 29.3 bits (64), Expect = 10.0
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 113 GKGQGHQYELNSKKHHQYQPHSKERAGKPPPPGKS----GKYYYQLNSKKHHPYQPDP 166
G G + + HH + PH PP P + S++HHP P P
Sbjct: 641 GASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPP 698
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 48.1 bits (113), Expect = 2e-05
Identities = 16/22 (72%), Positives = 16/22 (72%)
Query: 379 PPSHHPHPHPHHHHHHHHHHHH 400
P S HPH HHH HHHHHHHH
Sbjct: 647 PHSAQTHPHHHHHPHHHHHHHH 668
Score = 43.5 bits (101), Expect = 5e-04
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 378 HPPSHHPHPHPHHHHHHHHHH 398
H HPH H H HHHHHHHH
Sbjct: 648 HSAQTHPHHHHHPHHHHHHHH 668
Score = 32.7 bits (73), Expect = 0.90
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 377 THPPSHHPHPHPHHHHH 393
THP HH H HHHHH
Sbjct: 652 THPHHHHHPHHHHHHHH 668
Score = 29.3 bits (64), Expect = 10.0
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 113 GKGQGHQYELNSKKHHQYQPHSKERAGKPPPPGKS----GKYYYQLNSKKHHPYQPDP 166
G G + + HH + PH PP P + S++HHP P P
Sbjct: 641 GASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPP 698
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,156,629
Number of Sequences: 37866
Number of extensions: 1668775
Number of successful extensions: 13747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 395
Number of HSP's that attempted gapping in prelim test: 8609
Number of HSP's gapped (non-prelim): 3269
length of query: 560
length of database: 18,247,518
effective HSP length: 107
effective length of query: 453
effective length of database: 14,195,856
effective search space: 6430722768
effective search space used: 6430722768
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.