Name: CBX5 | Sequence: fasta or formatted (191aa) | NCBI GI: 6912292 | |
Description: heterochromatin protein 1-alpha
|
Referenced in: Centromere Proteins
| ||
Other entries for this name:
alt mRNA [191aa] heterochromatin protein 1-alpha alt mRNA [191aa] heterochromatin protein 1-alpha | |||
Composition:
Amino acid Percentage Count Longest homopolymer A alanine 5.8 11 1 C cysteine 1.6 3 1 D aspartate 6.8 13 2 E glutamate 14.7 28 3 F phenylalanine 3.1 6 1 G glycine 4.2 8 1 H histidine 1.0 2 1 I isoleucine 3.7 7 2 K lysine 15.2 29 3 L leucine 5.8 11 2 M methionine 2.6 5 1 N asparagine 5.2 10 2 P proline 3.1 6 1 Q glutamine 1.6 3 1 R arginine 4.7 9 2 S serine 7.9 15 4 T threonine 3.7 7 1 V valine 4.7 9 2 W tryptophan 2.1 4 1 Y tyrosine 2.6 5 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 heterochromatin protein 1-alpha CBX5 1.000 heterochromatin protein 1-alpha CBX5 1.000 heterochromatin protein 1-alpha CBX1 0.584 heterochromatin protein 1-beta CBX1 0.584 heterochromatin protein 1-beta CBX3 0.556 chromobox homolog 3 CBX3 0.556 chromobox homolog 3 LOC100292569 0.205 PREDICTED: similar to Chromobox homolog 3 (Drosophi... LOC100289943 0.205 PREDICTED: hypothetical protein XP_002347334 LOC100288472 0.205 PREDICTED: hypothetical protein XP_002343183 CBX2 0.129 chromobox homolog 2 isoform 1 CBX2 0.123 chromobox homolog 2 isoform 2 CDYL 0.115 chromodomain protein, Y chromosome-like isoform a [... MPHOSPH8 0.110 M-phase phosphoprotein 8 CBX8 0.104 chromobox homolog 8 CBX4 0.099 chromobox homolog 4 CBX6 0.093 chromobox homolog 6 CBX7 0.090 chromobox homolog 7 CDYL2 0.088 chromodomain protein, Y-like 2 CDY1 0.082 Y chromosome chromodomain protein 1, telomeric isofor... CDY1 0.082 Y chromosome chromodomain protein 1, telomeric isofo... CDY1B 0.082 chromodomain protein, Y-linked, 1B isoform b CDY1B 0.082 chromodomain protein, Y-linked, 1B isoform a CDY2B 0.079 Y chromosome chromodomain protein 2B CDY2A 0.079 Y chromosome chromodomain protein 2A SUV39H1 0.071 suppressor of variegation 3-9 homolog 1 SUV39H2 0.066 suppressor of variegation 3-9 homolog 2 CHD2 0.058 chromodomain helicase DNA binding protein 2 isoform... CHD2 0.058 chromodomain helicase DNA binding protein 2 isoform... CHD1 0.055 chromodomain helicase DNA binding protein 1Human BLASTP results (used to prepare the table) |
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.