CBX1 10139

Name: CBX1	Sequence: fasta or formatted (185aa)		NCBI GI: 187960037
Description: heterochromatin protein 1-beta		Referenced in: Nonhistone Chromosomal Proteins
Other entries for this name: alt mRNA [185aa] heterochromatin protein 1-beta
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.3 8 1 C cysteine 1.1 2 1 D aspartate 9.2 17 3 E glutamate 16.8 31 6 F phenylalanine 2.7 5 1 G glycine 5.4 10 2 H histidine 1.1 2 1 I isoleucine 2.2 4 2 K lysine 15.1 28 4 L leucine 6.5 12 2 M methionine 1.6 3 1 N asparagine 3.2 6 1 P proline 4.3 8 1 Q glutamine 2.2 4 1 R arginine 3.8 7 2 S serine 7.0 13 2 T threonine 2.7 5 1 V valine 6.5 12 2 W tryptophan 2.2 4 1 Y tyrosine 2.2 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 heterochromatin protein 1-beta CBX1 1.000 heterochromatin protein 1-beta CBX3 0.651 chromobox homolog 3 CBX3 0.651 chromobox homolog 3 CBX5 0.600 heterochromatin protein 1-alpha CBX5 0.600 heterochromatin protein 1-alpha CBX5 0.600 heterochromatin protein 1-alpha LOC100292569 0.220 PREDICTED: similar to Chromobox homolog 3 (Drosophi... LOC100289943 0.220 PREDICTED: hypothetical protein XP_002347334 LOC100288472 0.220 PREDICTED: hypothetical protein XP_002343183 CBX2 0.118 chromobox homolog 2 isoform 1 MPHOSPH8 0.115 M-phase phosphoprotein 8 CBX2 0.113 chromobox homolog 2 isoform 2 CDYL 0.107 chromodomain protein, Y chromosome-like isoform a [... CBX7 0.096 chromobox homolog 7 CBX4 0.096 chromobox homolog 4 CBX6 0.096 chromobox homolog 6 CBX8 0.093 chromobox homolog 8 CDYL2 0.085 chromodomain protein, Y-like 2 CDY2B 0.076 Y chromosome chromodomain protein 2B CDY2A 0.076 Y chromosome chromodomain protein 2A CDY1 0.076 Y chromosome chromodomain protein 1, telomeric isofor... CDY1 0.076 Y chromosome chromodomain protein 1, telomeric isofo... CDY1B 0.076 chromodomain protein, Y-linked, 1B isoform b CDY1B 0.076 chromodomain protein, Y-linked, 1B isoform a SUV39H1 0.068 suppressor of variegation 3-9 homolog 1 SUV39H2 0.062 suppressor of variegation 3-9 homolog 2 NEFM 0.054 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.054 neurofilament, medium polypeptide 150kDa isoform 2 ... CNGB1 0.051 cyclic nucleotide gated channel beta 1 isoform a [H... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.