Guide to the Human Genome
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Name: CBX3 Sequence: fasta or formatted (183aa) NCBI GI: 20544151
Description:

chromobox homolog 3

Referenced in:

Centromere Proteins
Nonhistone Chromosomal Proteins

Other entries for this name:
alt mRNA [183aa] chromobox homolog 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         14           2
 C cysteine            1.6          3           1
 D aspartate           8.7         16           2
 E glutamate          12.0         22           2
 F phenylalanine       3.8          7           1
 G glycine             5.5         10           1
 H histidine           0.5          1           1
 I isoleucine          2.7          5           2
 K lysine             13.7         25           3
 L leucine             7.1         13           1
 M methionine          2.7          5           1
 N asparagine          3.8          7           1
 P proline             3.8          7           1
 Q glutamine           2.7          5           1
 R arginine            4.4          8           2
 S serine              7.1         13           2
 T threonine           3.8          7           2
 V valine              4.9          9           2
 W tryptophan          2.2          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromobox homolog 3 
CBX3                  1.000   chromobox homolog 3 
CBX1                  0.664   heterochromatin protein 1-beta 
CBX1                  0.664   heterochromatin protein 1-beta 
CBX5                  0.583   heterochromatin protein 1-alpha 
CBX5                  0.583   heterochromatin protein 1-alpha 
CBX5                  0.583   heterochromatin protein 1-alpha 
LOC100292569          0.330   PREDICTED: similar to Chromobox homolog 3 (Drosophi...
LOC100289943          0.330   PREDICTED: hypothetical protein XP_002347334 
LOC100288472          0.330   PREDICTED: hypothetical protein XP_002343183 
MPHOSPH8              0.109   M-phase phosphoprotein 8 
CBX2                  0.109   chromobox homolog 2 isoform 1 
CDYL                  0.103   chromodomain protein, Y chromosome-like isoform a [...
CBX4                  0.103   chromobox homolog 4 
CBX2                  0.101   chromobox homolog 2 isoform 2 
CBX8                  0.101   chromobox homolog 8 
CBX7                  0.092   chromobox homolog 7 
CBX6                  0.089   chromobox homolog 6 
CDY1                  0.086   Y chromosome chromodomain protein 1, telomeric isofor...
CDY1                  0.086   Y chromosome chromodomain protein 1, telomeric isofo...
CDY1B                 0.086   chromodomain protein, Y-linked, 1B isoform b 
CDY1B                 0.086   chromodomain protein, Y-linked, 1B isoform a 
CDY2B                 0.086   Y chromosome chromodomain protein 2B 
CDY2A                 0.086   Y chromosome chromodomain protein 2A 
CDYL2                 0.075   chromodomain protein, Y-like 2 
SUV39H2               0.072   suppressor of variegation 3-9 homolog 2 
SUV39H1               0.069   suppressor of variegation 3-9 homolog 1 
CHD5                  0.037   chromodomain helicase DNA binding protein 5 
CHD1                  0.037   chromodomain helicase DNA binding protein 1 
CHD4                  0.037   chromodomain helicase DNA binding protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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