Guide to the Human Genome
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Name: CBX7 Sequence: fasta or formatted (251aa) NCBI GI: 28372505
Description:

chromobox homolog 7

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         21           2
 C cysteine            0.8          2           1
 D aspartate           3.6          9           1
 E glutamate          10.4         26           3
 F phenylalanine       3.6          9           2
 G glycine             6.4         16           1
 H histidine           2.0          5           1
 I isoleucine          2.0          5           1
 K lysine              9.2         23           2
 L leucine             9.6         24           3
 M methionine          1.2          3           1
 N asparagine          0.8          2           1
 P proline            11.2         28           3
 Q glutamine           2.4          6           1
 R arginine            8.4         21           2
 S serine              6.8         17           2
 T threonine           3.6          9           1
 V valine              5.6         14           2
 W tryptophan          2.0          5           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromobox homolog 7 
CBX4                  0.217   chromobox homolog 4 
CBX6                  0.193   chromobox homolog 6 
CBX8                  0.189   chromobox homolog 8 
CBX2                  0.157   chromobox homolog 2 isoform 2 
CBX2                  0.157   chromobox homolog 2 isoform 1 
CBX1                  0.069   heterochromatin protein 1-beta 
CBX1                  0.069   heterochromatin protein 1-beta 
CBX5                  0.067   heterochromatin protein 1-alpha 
CBX5                  0.067   heterochromatin protein 1-alpha 
CBX5                  0.067   heterochromatin protein 1-alpha 
CBX3                  0.065   chromobox homolog 3 
CBX3                  0.065   chromobox homolog 3 
MPHOSPH8              0.055   M-phase phosphoprotein 8 
CDYL                  0.055   chromodomain protein, Y chromosome-like isoform a [...
CDY1                  0.045   Y chromosome chromodomain protein 1, telomeric isofor...
CDY1                  0.045   Y chromosome chromodomain protein 1, telomeric isofo...
CDY1B                 0.045   chromodomain protein, Y-linked, 1B isoform b 
CDY1B                 0.045   chromodomain protein, Y-linked, 1B isoform a 
CDY2B                 0.045   Y chromosome chromodomain protein 2B 
CDY2A                 0.045   Y chromosome chromodomain protein 2A 
CDYL2                 0.043   chromodomain protein, Y-like 2 
CHD1                  0.037   chromodomain helicase DNA binding protein 1 
SUV39H2               0.035   suppressor of variegation 3-9 homolog 2 
SUV39H1               0.033   suppressor of variegation 3-9 homolog 1 
CHD2                  0.033   chromodomain helicase DNA binding protein 2 isoform...
INPP5D                0.033   SH2 containing inositol phosphatase isoform b 
INPP5D                0.033   SH2 containing inositol phosphatase isoform a 
CHD2                  0.033   chromodomain helicase DNA binding protein 2 isoform...
FAM75C1               0.030   family with sequence similarity 75, member C1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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