Guide to the Human Genome
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Name: DCAF5 Sequence: fasta or formatted (942aa) NCBI GI: 55741849
Description:

WD repeat domain 22

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         50           2
 C cysteine            2.0         19           2
 D aspartate           6.8         64           2
 E glutamate           7.2         68           3
 F phenylalanine       2.8         26           2
 G glycine             7.1         67           2
 H histidine           3.2         30           2
 I isoleucine          3.4         32           2
 K lysine              3.7         35           2
 L leucine             7.9         74           2
 M methionine          1.5         14           2
 N asparagine          5.4         51           2
 P proline             6.5         61           3
 Q glutamine           3.3         31           2
 R arginine            7.0         66           3
 S serine             13.3        125          10
 T threonine           5.4         51           3
 V valine              4.7         44           2
 W tryptophan          1.1         10           1
 Y tyrosine            2.5         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 22 
WDR42A                0.039   H326 
DCAF8L2               0.030   DDB1 and CUL4 associated factor 8-like 2 
WDTC1                 0.029   WD and tetratricopeptide repeats 1 
DCAF8L1               0.025   DDB1 and CUL4 associated factor 8-like 1 
WDR5B                 0.025   WD repeat domain 5B 
SNRNP40               0.024   WD repeat domain 57 (U5 snRNP specific) 
WDR5                  0.024   WD repeat domain 5 
WDR5                  0.024   WD repeat domain 5 
STRN4                 0.024   zinedin isoform 2 
STRN4                 0.024   zinedin isoform 1 
WDR33                 0.023   WD repeat domain 33 isoform 1 
PLRG1                 0.022   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
WDR38                 0.020   WD repeat domain 38 
DSPP                  0.019   dentin sialophosphoprotein preproprotein 
KATNB1                0.019   katanin p80 subunit B 1 
NEDD1                 0.019   neural precursor cell expressed, developmentally do...
NEDD1                 0.019   neural precursor cell expressed, developmentally dow...
NEDD1                 0.019   neural precursor cell expressed, developmentally do...
CDC40                 0.018   cell division cycle 40 homolog 
ERCC8                 0.018   excision repair cross-complementing rodent repair def...
STRN3                 0.018   nuclear autoantigen isoform 1 
STRN3                 0.018   nuclear autoantigen isoform 2 
NEDD1                 0.017   neural precursor cell expressed, developmentally do...
WDR69                 0.017   WD repeat domain 69 
RBBP7                 0.017   retinoblastoma binding protein 7 
TAF5L                 0.017   PCAF associated factor 65 beta isoform a 
WDR23                 0.016   WD repeat domain 23 isoform 1 
WDR23                 0.016   WD repeat domain 23 isoform 2 
RBBP4                 0.016   retinoblastoma binding protein 4 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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