Guide to the Human Genome
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Name: WDR23 Sequence: fasta or formatted (546aa) NCBI GI: 31657103
Description:

WD repeat domain 23 isoform 1

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [520aa] WD repeat domain 23 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         36           2
 C cysteine            2.0         11           1
 D aspartate           8.2         45           2
 E glutamate           5.9         32           6
 F phenylalanine       4.4         24           1
 G glycine             8.2         45           3
 H histidine           2.7         15           1
 I isoleucine          4.6         25           1
 K lysine              3.8         21           2
 L leucine             7.7         42           2
 M methionine          1.3          7           1
 N asparagine          2.7         15           1
 P proline             3.8         21           2
 Q glutamine           5.7         31           2
 R arginine            8.6         47           2
 S serine              9.7         53           3
 T threonine           3.7         20           1
 V valine              5.1         28           3
 W tryptophan          2.0         11           1
 Y tyrosine            3.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 23 isoform 1 
WDR23                 0.944   WD repeat domain 23 isoform 2 
SNRNP40               0.059   WD repeat domain 57 (U5 snRNP specific) 
WDR61                 0.047   WD repeat domain 61 
WDR5B                 0.046   WD repeat domain 5B 
SMU1                  0.035   smu-1 suppressor of mec-8 and unc-52 homolog 
PLRG1                 0.034   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
KATNB1                0.033   katanin p80 subunit B 1 
PRPF4                 0.033   PRP4 pre-mRNA processing factor 4 homolog 
NLE1                  0.033   Notchless gene homolog isoform a 
MORG1                 0.033   mitogen-activated protein kinase organizer 1 
MORG1                 0.033   mitogen-activated protein kinase organizer 1 
WDR51A                0.031   WD repeat domain 51A isoform 2 
WDR51A                0.031   WD repeat domain 51A isoform 1 
UTP15                 0.031   UTP15, U3 small nucleolar ribonucleoprotein, homolog...
GNB2                  0.030   guanine nucleotide-binding protein, beta-2 subunit [...
BRWD1                 0.030   bromodomain and WD repeat domain containing 1 isofor...
BRWD1                 0.030   bromodomain and WD repeat domain containing 1 isofor...
NLE1                  0.030   Notchless gene homolog isoform b 
BRWD3                 0.030   bromodomain and WD repeat domain containing 3 [Homo...
STRAP                 0.029   serine/threonine kinase receptor associated protein...
WDR51B                0.029   WD repeat domain 51B 
WDR38                 0.029   WD repeat domain 38 
WDR5                  0.029   WD repeat domain 5 
WDR5                  0.029   WD repeat domain 5 
DCAF5                 0.028   WD repeat domain 22 
APAF1                 0.028   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.028   apoptotic peptidase activating factor 1 isoform a [Ho...
TAF5                  0.028   TBP-associated factor 5 
GNB4                  0.027   guanine nucleotide-binding protein, beta-4 subunit [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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