Guide to the Human Genome
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Name: STRN3 Sequence: fasta or formatted (713aa) NCBI GI: 142976675
Description:

nuclear autoantigen isoform 2

Referenced in:

Calmodulin and Calcium
WD Repeat Proteins

Other entries for this name:
alt prot [797aa] nuclear autoantigen isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         56           2
 C cysteine            1.0          7           1
 D aspartate           7.0         50           2
 E glutamate           7.0         50           2
 F phenylalanine       2.8         20           2
 G glycine             9.5         68           6
 H histidine           3.1         22           1
 I isoleucine          4.6         33           1
 K lysine              5.6         40           2
 L leucine             9.1         65           2
 M methionine          1.8         13           1
 N asparagine          4.3         31           2
 P proline             5.3         38           2
 Q glutamine           4.2         30           3
 R arginine            3.8         27           2
 S serine              7.6         54           2
 T threonine           5.8         41           1
 V valine              5.3         38           2
 W tryptophan          1.5         11           2
 Y tyrosine            2.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear autoantigen isoform 2 
STRN3                 0.772   nuclear autoantigen isoform 1 
STRN                  0.557   striatin, calmodulin binding protein 
STRN4                 0.509   zinedin isoform 2 
STRN4                 0.508   zinedin isoform 1 
LOC100133284          0.058   PREDICTED: similar to hCG1791648 
LOC100133284          0.058   PREDICTED: similar to hCG1791648 
LOC100133284          0.057   PREDICTED: similar to hCG1791648 
PAFAH1B1              0.048   platelet-activating factor acetylhydrolase, isoform I...
WDR69                 0.048   WD repeat domain 69 
WDR51B                0.046   WD repeat domain 51B 
PLRG1                 0.043   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
WDR5B                 0.043   WD repeat domain 5B 
TBL1XR1               0.040   transducin (beta)-like 1 X-linked receptor 1 
TBL1X                 0.040   transducin beta-like 1X isoform b 
TBL1X                 0.040   transducin beta-like 1X isoform b 
TBL1X                 0.040   transducin beta-like 1X isoform a 
TBL1X                 0.040   transducin beta-like 1X isoform a 
COPA                  0.040   coatomer protein complex, subunit alpha isoform 1 [...
COPA                  0.040   coatomer protein complex, subunit alpha isoform 2 [...
SNRNP40               0.039   WD repeat domain 57 (U5 snRNP specific) 
WDR5                  0.039   WD repeat domain 5 
WDR5                  0.039   WD repeat domain 5 
TBL1Y                 0.038   transducin beta-like 1Y 
TBL1Y                 0.038   transducin beta-like 1Y 
TBL1Y                 0.038   transducin beta-like 1Y 
FBXW7                 0.036   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.036   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.036   F-box and WD repeat domain containing 7 isoform 2 [H...
SPAG16                0.036   sperm associated antigen 16 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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