Guide to the Human Genome
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Name: NEDD1 Sequence: fasta or formatted (660aa) NCBI GI: 23097254
Description:

neural precursor cell expressed, developmentally down-regulated 1 isoform b

Referenced in:

Neurons

Other entries for this name:
alt prot [667aa] neural precursor cell expressed, developmentally down-regulated 1...
alt mRNA [660aa] neural precursor cell expressed, developmentally down-regulated 1...
alt prot [571aa] neural precursor cell expressed, developmentally down-regulated 1...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         34           2
 C cysteine            1.7         11           1
 D aspartate           5.3         35           2
 E glutamate           4.8         32           2
 F phenylalanine       3.5         23           1
 G glycine             6.1         40           2
 H histidine           2.3         15           1
 I isoleucine          5.6         37           2
 K lysine              7.1         47           2
 L leucine             8.2         54           2
 M methionine          2.1         14           1
 N asparagine          7.1         47           3
 P proline             4.5         30           2
 Q glutamine           3.8         25           1
 R arginine            3.5         23           1
 S serine             13.5         89           3
 T threonine           6.4         42           2
 V valine              7.0         46           2
 W tryptophan          0.8          5           1
 Y tyrosine            1.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neural precursor cell expressed, developmentally dow... 
NEDD1                 1.000   neural precursor cell expressed, developmentally do...
NEDD1                 1.000   neural precursor cell expressed, developmentally do...
NEDD1                 0.860   neural precursor cell expressed, developmentally do...
WDR5                  0.043   WD repeat domain 5 
WDR5                  0.043   WD repeat domain 5 
KATNB1                0.037   katanin p80 subunit B 1 
WDR5B                 0.034   WD repeat domain 5B 
WDR51A                0.033   WD repeat domain 51A isoform 2 
PWP2                  0.032   PWP2 periodic tryptophan protein homolog 
WDSUB1                0.031   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.031   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.031   WD repeat, sterile alpha motif and U-box domain con...
WDR51A                0.030   WD repeat domain 51A isoform 1 
GNB1                  0.030   guanine nucleotide-binding protein, beta-1 subunit [...
WDR38                 0.029   WD repeat domain 38 
DCAF5                 0.028   WD repeat domain 22 
SNRNP40               0.028   WD repeat domain 57 (U5 snRNP specific) 
GNB3                  0.025   guanine nucleotide-binding protein, beta-3 subunit [H...
GNB2                  0.024   guanine nucleotide-binding protein, beta-2 subunit [...
WDR88                 0.023   PQQ repeat and WD repeat domain containing 
FBXW11                0.023   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.023   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.023   F-box and WD repeat domain containing 11 isoform B [...
WDR33                 0.023   WD repeat domain 33 isoform 1 
GNB2L1                0.022   guanine nucleotide binding protein (G protein), beta ...
WDR69                 0.021   WD repeat domain 69 
WDR51A                0.021   WD repeat domain 51A isoform 3 
WDR61                 0.021   WD repeat domain 61 
BTRC                  0.020   beta-transducin repeat containing protein isoform 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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