Guide to the Human Genome
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Name: DCAF8L1 Sequence: fasta or formatted (600aa) NCBI GI: 62988359
Description:

DDB1 and CUL4 associated factor 8-like 1

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         33           2
 C cysteine            2.2         13           1
 D aspartate           7.5         45           2
 E glutamate           9.7         58           6
 F phenylalanine       4.3         26           2
 G glycine             7.5         45           2
 H histidine           3.2         19           2
 I isoleucine          3.5         21           2
 K lysine              3.5         21           2
 L leucine             7.3         44           2
 M methionine          1.5          9           1
 N asparagine          4.3         26           2
 P proline             4.0         24           1
 Q glutamine           4.7         28           1
 R arginine            6.2         37           2
 S serine              8.7         52           3
 T threonine           5.8         35           1
 V valine              6.7         40           3
 W tryptophan          1.2          7           1
 Y tyrosine            2.8         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DDB1 and CUL4 associated factor 8-like 1 
DCAF8L2               0.769   DDB1 and CUL4 associated factor 8-like 2 
WDR42A                0.638   H326 
DCAF6                 0.085   IQ motif and WD repeats 1 isoform b 
DCAF6                 0.085   IQ motif and WD repeats 1 isoform a 
WDTC1                 0.068   WD and tetratricopeptide repeats 1 
DCAF5                 0.040   WD repeat domain 22 
MORG1                 0.032   mitogen-activated protein kinase organizer 1 
MORG1                 0.032   mitogen-activated protein kinase organizer 1 
WDR5                  0.032   WD repeat domain 5 
WDR5                  0.032   WD repeat domain 5 
WDR82                 0.031   WD repeat domain 82 
WDR26                 0.031   WD repeat domain 26 isoform b 
WDR26                 0.031   WD repeat domain 26 isoform a 
SNRNP40               0.028   WD repeat domain 57 (U5 snRNP specific) 
WDR5B                 0.027   WD repeat domain 5B 
MYT1                  0.024   myelin transcription factor 1 
GRWD1                 0.023   glutamate-rich WD repeat containing 1 
PWP1                  0.022   periodic tryptophan protein 1 
WDR70                 0.020   WD repeat domain 70 
COPB2                 0.019   coatomer protein complex, subunit beta 2 (beta prime)...
KATNB1                0.018   katanin p80 subunit B 1 
WSB1                  0.017   WD repeat and SOCS box-containing 1 isoform 2 
SLC24A1               0.017   solute carrier family 24 (sodium/potassium/calcium ex...
YTHDC1                0.017   splicing factor YT521-B isoform 2 
YTHDC1                0.017   splicing factor YT521-B isoform 1 
WDR38                 0.017   WD repeat domain 38 
SUPT5H                0.016   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.016   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.016   suppressor of Ty 5 homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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