Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 54607108
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
(920 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 1909 0.0
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s... 1842 0.0
gi|31543543 retinoic acid induced 17 [Homo sapiens] 1087 0.0
gi|27532984 protein inhibitor of activated STAT X isoform alpha ... 92 2e-18
gi|56699458 protein inhibitor of activated STAT X isoform beta [... 92 2e-18
gi|24850133 protein inhibitor of activated STAT, 4 [Homo sapiens] 88 4e-17
gi|7706637 protein inhibitor of activated STAT, 1 [Homo sapiens] 87 9e-17
gi|115298686 protein inhibitor of activated STAT, 3 [Homo sapiens] 82 3e-15
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 69 3e-11
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 65 3e-10
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 65 3e-10
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 65 3e-10
gi|153792074 proline rich 12 [Homo sapiens] 64 8e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 62 3e-09
gi|110832843 TBP-associated factor 4 [Homo sapiens] 61 4e-09
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 61 4e-09
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 61 4e-09
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 61 4e-09
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 61 4e-09
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 61 5e-09
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 61 5e-09
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 60 9e-09
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 60 1e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 60 1e-08
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 60 1e-08
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 60 1e-08
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 60 1e-08
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 58 4e-08
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 58 4e-08
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 58 4e-08
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 1909 bits (4946), Expect = 0.0
Identities = 920/920 (100%), Positives = 920/920 (100%)
Query: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP
Sbjct: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
Query: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF
Sbjct: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS
Sbjct: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL
Sbjct: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA
Sbjct: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTR 360
PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTR
Sbjct: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTR 360
Query: 361 SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE 420
SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE
Sbjct: 361 SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE 420
Query: 421 LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN 480
LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN
Sbjct: 421 LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN 480
Query: 481 TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL 540
TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL
Sbjct: 481 TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL 540
Query: 541 VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC 600
VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC
Sbjct: 541 VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC 600
Query: 601 PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI 660
PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI
Sbjct: 601 PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI 660
Query: 661 LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI 720
LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI
Sbjct: 661 LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI 720
Query: 721 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780
AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP
Sbjct: 721 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP
Sbjct: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
Query: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL 900
PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL
Sbjct: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL 900
Query: 901 GPPDLPTNNNDDLLSLFENN 920
GPPDLPTNNNDDLLSLFENN
Sbjct: 901 GPPDLPTNNNDDLLSLFENN 920
>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
Length = 894
Score = 1842 bits (4771), Expect = 0.0
Identities = 894/920 (97%), Positives = 894/920 (97%), Gaps = 26/920 (2%)
Query: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP
Sbjct: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
Query: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF
Sbjct: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
Query: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS
Sbjct: 121 TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELS 180
Query: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL
Sbjct: 181 QYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
Query: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA
Sbjct: 241 YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPA 300
Query: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTR 360
PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT R
Sbjct: 301 PSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT--------------------------R 334
Query: 361 SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE 420
SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE
Sbjct: 335 SIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDE 394
Query: 421 LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN 480
LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN
Sbjct: 395 LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMN 454
Query: 481 TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL 540
TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL
Sbjct: 455 TNWPASVQVSVNATPLTIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQL 514
Query: 541 VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC 600
VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC
Sbjct: 515 VHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKC 574
Query: 601 PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI 660
PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI
Sbjct: 575 PITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGI 634
Query: 661 LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI 720
LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI
Sbjct: 635 LIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI 694
Query: 721 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780
AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP
Sbjct: 695 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 754
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP
Sbjct: 755 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 814
Query: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL 900
PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL
Sbjct: 815 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYL 874
Query: 901 GPPDLPTNNNDDLLSLFENN 920
GPPDLPTNNNDDLLSLFENN
Sbjct: 875 GPPDLPTNNNDDLLSLFENN 894
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 1087 bits (2812), Expect = 0.0
Identities = 581/957 (60%), Positives = 687/957 (71%), Gaps = 55/957 (5%)
Query: 1 MNSMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP 60
++SM+ MKP L H DGSF Y+SVPWQQ+ QP GSLSVVTTVWGV N +QSQVLGNP
Sbjct: 129 LSSMSSMKPTLS---HSDGSFPYDSVPWQQNTNQPPGSLSVVTTVWGVTNTSQSQVLGNP 185
Query: 61 MGPAGSP---SGSSMMPGVAGGSSALTSPQCLGQQA--FAEGGANKGYVQQGVYSRGGYP 115
M A +P G+ M G+ + L SPQ GQQ A+ G + Y+QQ +Y R YP
Sbjct: 186 MANANNPMNPGGNPMASGMTTSNPGLNSPQFAGQQQQFSAKAGPAQPYIQQSMYGRPNYP 245
Query: 116 GAPGFTTGYAGGPG---GLGLPSHAARPSTDFTQ---AAAAAAVAAAAATATATATATVA 169
G+ GF Y GGP G+G+P H RP DFTQ AAAAAAVAAAAATATATATATVA
Sbjct: 246 GSGGFGASYPGGPNAPAGMGIPPHT-RPPADFTQPAAAAAAAAVAAAAATATATATATVA 304
Query: 170 ALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAG-MNPTGIGGVMGPSGLS--P 226
ALQE Q+++++QYG MG Q++NSQF+ GPRGP+ G MNP + M PSG+S P
Sbjct: 305 ALQETQNKDINQYGPMGPTQAYNSQFMNQPGPRGPASMGGSMNPASMAAGMTPSGMSGPP 364
Query: 227 LAMNPTRAAGMTPLYA-GQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYA 285
+ MN R G++P GQR+PQ YPGP + Q LP Q +KR Y PG+ QY
Sbjct: 365 MGMNQPRPPGISPFGTHGQRMPQQTYPGP-RPQSLPIQNIKRPY----PGEPNYGNQQYG 419
Query: 286 PSTAQFAPSPGQPPAP-------SPSYPGHRLPLQQGMTQSLSVPGPT---GLHYKPTEQ 335
P++ QF PGQ PAP SP+YPG R+P Q Q P PT G +YKP EQ
Sbjct: 420 PNS-QFPTQPGQYPAPNPPRPLTSPNYPGQRMPSQPSSGQ---YPPPTVNMGQYYKP-EQ 474
Query: 336 FNGQGASFNGGSVS-YSQPGLSGPTRSIP--GYPSSPLPGNPTPPMTPSSSVP-YMSPNQ 391
FNGQ +F+G S S YSQ ++ P R +P YP SP+PGNPTPPMTP SS+P Y+SP+Q
Sbjct: 475 FNGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPGNPTPPMTPGSSIPPYLSPSQ 534
Query: 392 EVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSNHVFQL 451
+VK PF PD+KPN+++L P+ DELRLTFPVRDGVVLEPFRL+HNLAVSNHVF L
Sbjct: 535 DVKPPFPPDIKPNMSALPPPPANHN--DELRLTFPVRDGVVLEPFRLEHNLAVSNHVFHL 592
Query: 452 RDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPLY 511
R +V++TL+ R DLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPL+
Sbjct: 593 RPTVHQTLMWRSDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNKTSHKPLH 652
Query: 512 LKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRN 571
LKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRN
Sbjct: 653 LKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRN 712
Query: 572 FSS-GTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQL 630
FSS G NGEDGVEQTAIKVSLKCPITFRRIQLPARGHDC+H+QCFDLESYLQL
Sbjct: 713 FSSVAASSGNTTLNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCKHVQCFDLESYLQL 772
Query: 631 NCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVKPDMH 690
NCERGTWRCPVCNKTALLEGLEVDQYM GIL IQ+S++EE+TIDPTCSW+PVP+K D+H
Sbjct: 773 NCERGTWRCPVCNKTALLEGLEVDQYMWGILNAIQHSEFEEVTIDPTCSWRPVPIKSDLH 832
Query: 691 IKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSS 750
IK++PDG KR +T+SP+ ++MP+VMEMIAALGPG +P+ PP +DY QG++
Sbjct: 833 IKDDPDGIPSKRFKTMSPSQMIMPNVMEMIAALGPGPSPYPLPPPPGGTNSNDYSSQGNN 892
Query: 751 FLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTA-CLPSQMAPAG 809
+ G G F FP P ++ +F GPP +S+ D+P+++ EK + + M AG
Sbjct: 893 YQGHGNF--DFPHGNPGGTSMNDFMHGPPQLSHPPDMPNNMAALEKPLSHPMQETMPHAG 950
Query: 810 HLDPTHNPGTPGLHTSNLGAPPGPQLHHSN-PPPASRQSLGQ-----ASLGPTGELAFSP 863
D H GLH + + GP LHHS PPP Q Q S P +L F+P
Sbjct: 951 SSDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPPPPPSQPPRQPPQAAPSSHPHSDLTFNP 1010
Query: 864 ATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNNDDLLSLFENN 920
++ + G GA + PEP+LDLLPELTNPDELLSYL PPDLP+N+NDDLLSLFENN
Sbjct: 1011 SSALEGQAGAQGASDMPEPSLDLLPELTNPDELLSYLDPPDLPSNSNDDLLSLFENN 1067
>gi|27532984 protein inhibitor of activated STAT X isoform alpha
[Homo sapiens]
Length = 572
Score = 92.0 bits (227), Expect = 2e-18
Identities = 93/349 (26%), Positives = 148/349 (42%), Gaps = 46/349 (13%)
Query: 380 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRL-TFPVRD--GVVLEPF 436
PS+SV SP+ V S L D KP SP +++L P D V+++P
Sbjct: 105 PSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPT 164
Query: 437 RLQHN----LAVSNHVFQLRDSVYKTLIMRPD----------LELQFK-CYHHEDRQMNT 481
L + +F L + + + D +++Q + C
Sbjct: 165 SLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQED 224
Query: 482 NWPASVQVSVNA--------TPLTIERGDNKTSHKPLYLKHVCQPGR---NTIQIT-VTA 529
N+P S+ + VN P + K +PL + + + N I I+ +
Sbjct: 225 NYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASE 284
Query: 530 CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGV 589
++ + LV + + +LQ L K + +H IK T P+ E +
Sbjct: 285 IGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKL-------TADPDSE--I 335
Query: 590 EQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLE 649
T+++VSL CP+ R+ +P R C H+QCFD YLQ+N ++ TW CPVC+K A E
Sbjct: 336 ATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 395
Query: 650 GLEVDQYMLGILIYIQN--SDYEEITIDPTCSWKPV-PVKPDMHIKEEP 695
L +D G+ + I N SD +EI SW P+ P K M + +P
Sbjct: 396 SLILD----GLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQP 440
>gi|56699458 protein inhibitor of activated STAT X isoform beta
[Homo sapiens]
Length = 621
Score = 92.0 bits (227), Expect = 2e-18
Identities = 93/349 (26%), Positives = 148/349 (42%), Gaps = 46/349 (13%)
Query: 380 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRL-TFPVRD--GVVLEPF 436
PS+SV SP+ V S L D KP SP +++L P D V+++P
Sbjct: 105 PSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPT 164
Query: 437 RLQHN----LAVSNHVFQLRDSVYKTLIMRPD----------LELQFK-CYHHEDRQMNT 481
L + +F L + + + D +++Q + C
Sbjct: 165 SLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQED 224
Query: 482 NWPASVQVSVNA--------TPLTIERGDNKTSHKPLYLKHVCQPGR---NTIQIT-VTA 529
N+P S+ + VN P + K +PL + + + N I I+ +
Sbjct: 225 NYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASE 284
Query: 530 CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGTPGPNGEDGV 589
++ + LV + + +LQ L K + +H IK T P+ E +
Sbjct: 285 IGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKL-------TADPDSE--I 335
Query: 590 EQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNKTALLE 649
T+++VSL CP+ R+ +P R C H+QCFD YLQ+N ++ TW CPVC+K A E
Sbjct: 336 ATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 395
Query: 650 GLEVDQYMLGILIYIQN--SDYEEITIDPTCSWKPV-PVKPDMHIKEEP 695
L +D G+ + I N SD +EI SW P+ P K M + +P
Sbjct: 396 SLILD----GLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQP 440
>gi|24850133 protein inhibitor of activated STAT, 4 [Homo sapiens]
Length = 510
Score = 87.8 bits (216), Expect = 4e-17
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 21/223 (9%)
Query: 471 CYHHEDRQMNTNWPASVQVSVNAT--------PLTIERGDNKTSHKPLYLKHVCQPGRNT 522
CY +P ++ V VN + P + K +P+ L H+ T
Sbjct: 196 CYSDTSCPQEDQYPPNIAVKVNHSYCSVPGYYPSNKPGVEPKRPCRPINLTHLMYLSSAT 255
Query: 523 IQITVT--ACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIPGT 580
+ITVT S+ L LV + + +LQ L + E C +K
Sbjct: 256 NRITVTWGNYGKSYSVALYLVRQLTSSELLQRLKTIGVKHPELCKALVKEKLRLD----- 310
Query: 581 PGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCP 640
P+ E + T ++VSL CP+ R+ +P R C H+QCFD YLQ+N ++ TW CP
Sbjct: 311 --PDSE--IATTGVRVSLICPLVKMRLSVPCRAETCAHLQCFDAVFYLQMNEKKPTWMCP 366
Query: 641 VCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPV 683
VC+K A + L +D + IL +++D E +D SW P+
Sbjct: 367 VCDKPAPYDQLIIDGLLSKILSECEDADEIEYLVDG--SWCPI 407
>gi|7706637 protein inhibitor of activated STAT, 1 [Homo sapiens]
Length = 651
Score = 86.7 bits (213), Expect = 9e-17
Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 24/237 (10%)
Query: 465 LELQFKCYHHEDRQMNTNWPASVQVSVNATPLTI-------ERG-DNKTSHKPLYLKHVC 516
++L+F C ++P ++ V VN P ++ + G + K +P+ + +
Sbjct: 198 VQLRF-CLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRPINITSLV 256
Query: 517 QPGR---NTIQITVTA-CCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNF 572
+ NTI ++ TA ++ + LV + S +LQ L K + +H IK
Sbjct: 257 RLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKEKL 316
Query: 573 SSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNC 632
T P+ E + T+++VSL CP+ R+ +P R C H+QCFD Y+Q+N
Sbjct: 317 -------TADPDSE--IATTSLRVSLLCPLGKMRLTIPCRALTCSHLQCFDATLYIQMNE 367
Query: 633 ERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVKPDM 689
++ TW CPVC+K A E L +D + IL Y +D +EI +W P+ K ++
Sbjct: 368 KKPTWVCPVCDKKAPYEHLIIDGLFMEILKYC--TDCDEIQFKEDGTWAPMRSKKEV 422
>gi|115298686 protein inhibitor of activated STAT, 3 [Homo sapiens]
Length = 628
Score = 81.6 bits (200), Expect = 3e-15
Identities = 97/362 (26%), Positives = 146/362 (40%), Gaps = 53/362 (14%)
Query: 353 PG-LSGPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSS 411
PG L GP R + +P P P +P M P +P+ E+ P +L S+
Sbjct: 103 PGTLLGPKREVDMHPPLPQPVHPDVTMKP---LPFYEVYGELIRP---------TTLAST 150
Query: 412 PSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLIMRPDLELQFKC 471
S +E TF L P ++Q L S V Y + +L+F C
Sbjct: 151 SSQR--FEEAHFTF------ALTPQQVQQILT-SREVLPGAKCDYTIQV-----QLRF-C 195
Query: 472 YHHEDRQMNTNWPASVQVSVNAT--------PLTIERGDNKTSHKPLYLKHVCQPGRNTI 523
+P ++ V VN P T + K +P+ + + + T+
Sbjct: 196 LCETSCPQEDYFPPNLFVKVNGKLCPLPGYLPPTKNGAEPKRPSRPINITPLARLSA-TV 254
Query: 524 QITVTACCCSHL-----FVLQLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSGTIP 578
T+ S + LV + + ++LQ L K + +H IK
Sbjct: 255 PNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKL------ 308
Query: 579 GTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWR 638
T P+ E V T+++VSL CP+ R+ +P R C H+Q FD YLQ+N ++ TW
Sbjct: 309 -TADPDSE--VATTSLRVSLMCPLGKMRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWT 365
Query: 639 CPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGP 698
CPVC+K A E L +D + IL SD +EI SW P+ K + P G
Sbjct: 366 CPVCDKKAPYESLIIDGLFMEIL--SSCSDCDEIQFMEDGSWCPMKPKKEASEVCPPPGY 423
Query: 699 AL 700
L
Sbjct: 424 GL 425
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 68.6 bits (166), Expect = 3e-11
Identities = 65/222 (29%), Positives = 89/222 (40%), Gaps = 21/222 (9%)
Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQ- 258
G PSV +GM P G +G SP A + A+G +P Y+ P G PG P
Sbjct: 1529 GAWSPSVGSGMTP-------GAAGFSPSAASD--ASGFSPGYSPAWSPTPGSPGSPGPSS 1579
Query: 259 ---PLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQG 315
P P + +YS P + G Y P + ++P+ SPSY P
Sbjct: 1580 PYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS----PTSPN 1635
Query: 316 MTQSLSVPGPTGLHYKPTE-QFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNP 374
+ + PT Y PT ++ S++ S SYS S S P+SP
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1695
Query: 375 TPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLH-SSPSGS 415
+P +P+S P SP SP P P S +SPS S
Sbjct: 1696 SPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1735
Score = 66.6 bits (161), Expect = 1e-10
Identities = 99/399 (24%), Positives = 145/399 (36%), Gaps = 48/399 (12%)
Query: 31 SATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPS-GSSMMPGVAGGSSALTSPQCL 89
SA P G +S T W G P A SPS GS M PG AG S + S
Sbjct: 1505 SAPSPMGGISPAMTPWNQG--------ATPAYGAWSPSVGSGMTPGAAGFSPSAASDA-- 1554
Query: 90 GQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAA 149
G + GY + G PG+PG ++ Y PGG PS++ P++ + +
Sbjct: 1555 -------SGFSPGYSPAWSPTPGS-PGSPGPSSPYIPSPGGAMSPSYS--PTSPAYEPRS 1604
Query: 150 AAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAG 209
+ + + T + + + S Y S S P
Sbjct: 1605 PGGYTPQSPSYSPT-SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663
Query: 210 MNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQG-VKRT 268
+PT P+ S +P+ + +P Y+ P + P + P +
Sbjct: 1664 YSPTSPS--YSPTSPSYSPTSPSYSP-TSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPS 1719
Query: 269 YSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGL 328
YS P Y+P++ ++P+ P+ SP+ P + P T + PT
Sbjct: 1720 YSPTSP--------SYSPTSPSYSPT---SPSYSPTSPNYS-PTSPNYTPTSPSYSPTSP 1767
Query: 329 HYKPTE-QFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTPSSSVPYM 387
Y PT + +++ S SYS S S PSSP +P TPSS P
Sbjct: 1768 SYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSS--PSY 1825
Query: 388 SPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFP 426
SP+ SP P P +SPS S E T P
Sbjct: 1826 SPSSPSYSPTSPKYTP------TSPSYSPSSPEYTPTSP 1858
Score = 43.1 bits (100), Expect = 0.001
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 15/173 (8%)
Query: 714 PSVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSF--LGPGTFPESFPPTTPSTPTL 771
PS + P + + P P P Y S+ P P S P TP +PT
Sbjct: 1760 PSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSS-PRYTPQSPT- 1817
Query: 772 AEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP 831
+TP P SY PS TS K T PS + PT +P TS +P
Sbjct: 1818 --YTPSSP--SYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP---TSPKYSPT 1870
Query: 832 GPQLHHSNP---PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPE 881
P+ ++P P + S + PT + ++P + P S + + +P+
Sbjct: 1871 SPKYSPTSPTYSPTTPKYSPTSPTYSPTSPV-YTPTSPKYSPTSPTYSPTSPK 1922
Score = 41.2 bits (95), Expect = 0.004
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 280 QGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTE-QFNG 338
Q Y PS+ ++PS P+ SP+ P + P + S PT Y PT +++
Sbjct: 1814 QSPTYTPSSPSYSPS---SPSYSPTSPKY-TPTSPSYSPSSPEYTPTSPKYSPTSPKYSP 1869
Query: 339 QGASFNGGSVSYSQPGLSGPTRSIPGY-PSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPF 397
++ S +YS PT P Y P+SP +P TP+S P SP SP
Sbjct: 1870 TSPKYSPTSPTYS------PT--TPKYSPTSPTYSPTSPVYTPTS--PKYSPTSPTYSPT 1919
Query: 398 LPDLKPNLNSLH-SSPSGS 415
P P + +SP GS
Sbjct: 1920 SPKYSPTSPTYSPTSPKGS 1938
Score = 38.1 bits (87), Expect = 0.038
Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 20/186 (10%)
Query: 714 PSVMEMIAALGPGAAPF------APLQP----PSVPAPSDYPGQGSSFLGPGTFPESFPP 763
PS + PG +P +P P P +P+P S P P S
Sbjct: 1548 PSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGG 1607
Query: 764 TTPSTPTLAEFTP--GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPT---HNPG 818
TP +P+ + +P P SY P+ TS + PS + PT ++P
Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1667
Query: 819 TPGLH-TSNLGAPPGPQLHHSNP---PPASRQSLGQASLGPTGELAFSPATGVMGPPSMS 874
+P TS +P P ++P P + S S PT ++SP + P S S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPS 1726
Query: 875 GAGEAP 880
+ +P
Sbjct: 1727 YSPTSP 1732
Score = 33.1 bits (74), Expect = 1.2
Identities = 28/105 (26%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 296 GQPPAPSPSYPGHRLPLQQGMTQSLSVPGPT-GLHYKPTEQFNGQGASFNGGSVSYSQPG 354
G P+P P QG T + P+ G P A+ + S PG
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFS---PG 1560
Query: 355 LSGPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLP 399
S PG P SP P +P P + P SP P P
Sbjct: 1561 YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP 1605
Score = 32.0 bits (71), Expect = 2.7
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 725 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPS-TPTLAEFTPGPPPISY 783
P + ++P P P Y ++ P T + PT+P+ +PT +TP P Y
Sbjct: 1855 PTSPKYSPTSPKYSPTSPKYSPTSPTY-SPTT--PKYSPTSPTYSPTSPVYTPTSP--KY 1909
Query: 784 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPG 821
P+ TS K + P+ +P T++P +PG
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPT-YSPTSPKGSTYSPTSPG 1946
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 65.1 bits (157), Expect = 3e-10
Identities = 107/396 (27%), Positives = 132/396 (33%), Gaps = 75/396 (18%)
Query: 4 MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
+ PM P PP P G A P G V +V GVG + GNP P
Sbjct: 1227 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Query: 64 ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G P G G AG A P G N G V G G PG PG
Sbjct: 1279 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1336
Query: 120 --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G G G P P + A A + +Q +
Sbjct: 1337 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1388
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
+ ++ A G + GP GP PAG P G+ G+ GP G L
Sbjct: 1389 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1433
Query: 237 MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
P AGQ P G PG P + P ++ + + PG+Q +G + P T
Sbjct: 1434 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1491
Query: 290 QFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVS 349
+ G P P+ P L PGP GL QG N GS
Sbjct: 1492 GSPGAKGDGGIPGPAGP-------------LGPPGPPGLP-------GPQGPKGNKGSTG 1531
Query: 350 -YSQPGLSGPTRSIPGYPSSP-LPGNPTPPMTPSSS 383
Q G SG +PG P SP PG P+ SS
Sbjct: 1532 PAGQKGDSG----LPGPPGSPGPPGEVIQPLPILSS 1563
Score = 50.4 bits (119), Expect = 7e-06
Identities = 94/344 (27%), Positives = 115/344 (33%), Gaps = 71/344 (20%)
Query: 60 PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
P GP G P+G G AG L P G +QG G+PG
Sbjct: 824 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 872
Query: 118 PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
PG G G G G P + P+ A T+ E+
Sbjct: 873 PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 931
Query: 176 SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
Q G +G G H G RG + G P G GGV+GP G
Sbjct: 932 PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 985
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
PT G P+ G+R G PGPP Q LP ++G K
Sbjct: 986 ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 1037
Query: 271 EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHR----------LPLQQGMTQSL 320
+PG++ L G Q AP + P PP P S PG R LP G
Sbjct: 1038 RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGERGSAGTAGPIGLP---GRPGPQ 1092
Query: 321 SVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPG 364
PGP G P E+ A +G PG +GP S PG
Sbjct: 1093 GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS-PG 1135
Score = 48.9 bits (115), Expect = 2e-05
Identities = 83/308 (26%), Positives = 102/308 (33%), Gaps = 48/308 (15%)
Query: 57 LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
L P GP G P G PG+ G P + F GG +KG
Sbjct: 470 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 529
Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
+QQ + G PG G T G GGPG G + P +
Sbjct: 530 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 589
Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
A + G G G + GP+GP P G
Sbjct: 590 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 649
Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
+ P G+ G GP GL +P A AG+ P G PQ G PGPP Q P
Sbjct: 650 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 708
Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
QG+ + P + +G Q P A G P A P PGH Q G +
Sbjct: 709 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 758
Query: 320 LSVPGPTG 327
L PGP G
Sbjct: 759 LGPPGPQG 766
Score = 43.1 bits (100), Expect = 0.001
Identities = 109/433 (25%), Positives = 135/433 (31%), Gaps = 136/433 (31%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSP- 67
P PP P G+ + P ++ PAG V V L P GPAGSP
Sbjct: 1091 PQGPPGPAGE-----KGAPGEKGPQGPAGRDGVQGPVG----------LPGPAGPAGSPG 1135
Query: 68 ----SGSSMMPGVAG-----------GSSALTSPQCLGQQAFAEGGANKG-YVQQGVYSR 111
G PG G G L P +G A G G QQG++ +
Sbjct: 1136 EDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGP--VGAPGIAGGDGEPGPRGQQGMFGQ 1193
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G GA GF G PG +GL P
Sbjct: 1194 KGDEGARGF----PGPPGPIGLQGLPGPPG------------------------------ 1219
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPLAMN 230
++ ++ ++ G G GPRGP P G + P G G +G G
Sbjct: 1220 EKGENGDVGPMGPPGP-----------PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGE 1268
Query: 231 PTRAAGM-TPLYAGQRLP-----QHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
P A P AG P + G GPP A P G K PG +G
Sbjct: 1269 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP--GAKGP-----PGDDGPKGN-- 1319
Query: 285 APSTAQFAPSPGQPPAPSPS-------------YPGHRLPLQQGMTQSLSVPGPTGLHYK 331
P F PG P P P+ PG P G + PGP G
Sbjct: 1320 -PGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ--PGPPGPSGEAGPPGPPGKRGP 1376
Query: 332 P----TEQFNGQGASFNGGSVSYSQPGLSGPT--------------RSIPG-YPSSPLPG 372
P E G+ + G + + PG +GP R IPG LPG
Sbjct: 1377 PGAAGAEGRQGEKGA-KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1435
Query: 373 -----NPTPPMTP 380
P PM P
Sbjct: 1436 AAGQDGPPGPMGP 1448
Score = 41.6 bits (96), Expect = 0.003
Identities = 110/437 (25%), Positives = 140/437 (32%), Gaps = 95/437 (21%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
P GP G P G PG GG P G + F +G +KG+ +G G P
Sbjct: 581 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 636
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G PG G G G GLP A + T A +A +
Sbjct: 637 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 685
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ G MG Q Q G P +P P G G GP G LA P
Sbjct: 686 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 738
Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
A P + G+ + + G GPP Q P PR +G+K + E
Sbjct: 739 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 798
Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
+ G L+G G+ P + P P PS P YP
Sbjct: 799 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 858
Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGP--TRSIPG 364
G + P +G T PG G + +G + G Q G +GP +R G
Sbjct: 859 GRQGP--KGSTGFPGFPGANG-------EKGARGVAGKPG--PRGQRGPTGPRGSRGARG 907
Query: 365 YPSSPLP----GNPTPPMTPSSSVPYMSPNQEV--KSPFLPDLKPNLNSLHSSPSGSGPC 418
P P G PP P P P V P P P + L P G
Sbjct: 908 PTGKPGPKGTSGGDGPPGPPGERGP-QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET 966
Query: 419 DELRLTFPVRDGVVLEP 435
T P G V+ P
Sbjct: 967 GFQGKTGPPGPGGVVGP 983
Score = 38.9 bits (89), Expect = 0.022
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 854
LP + P G L P PG PG + + PPGP+ + P PP + + G L G
Sbjct: 656 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 715
Query: 855 PTGELAFSPATGVMGPPSMSGAGEAPEP 882
P G + G G P ++G A P
Sbjct: 716 PQGPIGPPGEKGPQGKPGLAGLPGADGP 743
Score = 37.7 bits (86), Expect = 0.049
Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)
Query: 724 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 779
GP P P PP P P+ G G G + PP P+ PGPP
Sbjct: 1321 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1375
Query: 780 ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 823
+ E P + P G P PG GL
Sbjct: 1376 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1435
Query: 824 TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 872
+ PPGP P P S+ G L G GE G G P
Sbjct: 1436 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1495
Query: 873 MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
G G P PA L P GPP LP
Sbjct: 1496 AKGDGGIPGPAGPLGPP-----------GPPGLP 1518
Score = 37.0 bits (84), Expect = 0.084
Identities = 56/193 (29%), Positives = 71/193 (36%), Gaps = 43/193 (22%)
Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
++ +GA G GQ ++ G GP GP+ PAG +MGP GL PT
Sbjct: 428 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 475
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
G G R P G PG P A LP PG + +Y +
Sbjct: 476 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 516
Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQP 353
+ P S + LQQ PGP GL +P G G+S G P
Sbjct: 517 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP-GPVGGPGSS--GAKGESGDP 570
Query: 354 GLSGPTRSIPGYP 366
G GP R + G P
Sbjct: 571 GPQGP-RGVQGPP 582
Score = 35.4 bits (80), Expect = 0.25
Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 795
P VPA +D +S G G + E P+ GPP + + I
Sbjct: 415 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 464
Query: 796 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 836
M P G PT PG PG L PPG L
Sbjct: 465 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 515
Query: 837 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 882
P +++++ QA L GP G + + G +G P SGA GE+ +P
Sbjct: 516 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 570
Score = 35.4 bits (80), Expect = 0.25
Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)
Query: 725 PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 778
PGAA P P+ PP +P PG PG PP T G
Sbjct: 1434 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1493
Query: 779 PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 838
P IP PAG L P PG PGL PGPQ
Sbjct: 1494 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1525
Query: 839 NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 882
N + S GP G+ S G+ GPP G GE +P
Sbjct: 1526 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1557
Score = 34.7 bits (78), Expect = 0.42
Identities = 86/350 (24%), Positives = 102/350 (29%), Gaps = 58/350 (16%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
P GP G P GS G AG + + P G Q E GA QG R G
Sbjct: 1061 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1119
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G G G AG PG G P ++ A A +
Sbjct: 1120 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1179
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ Q G G Q G P P G+ G+ GP G
Sbjct: 1180 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1223
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
+ P+ G PGPP P QG + PG GG A
Sbjct: 1224 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1272
Query: 293 PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSY- 350
+PG P P G R ++G GP G P + G N G V +
Sbjct: 1273 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGD----DGPKGNPGPVGFP 1326
Query: 351 ---SQPGLSGPT-----------RSIPGYPSSPLP-GNPTPPMTPSSSVP 385
PG GP PG P P P G PP P P
Sbjct: 1327 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGP 1376
Score = 34.3 bits (77), Expect = 0.55
Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 720 IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 777
+ +GP P P P P PG S G G E P P E G
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1284
Query: 778 PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 835
P EK A P P G P + G G + +G P PGP
Sbjct: 1285 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1332
Query: 836 HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 876
P PA + +G GP+GE G GPP +GA
Sbjct: 1333 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1382
Score = 32.3 bits (72), Expect = 2.1
Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 790
P PP + P PG PG + F PGPP PI Q +P
Sbjct: 1160 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1217
Query: 791 LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 849
P + G + P PG PG P GPQ + ++ P S+G
Sbjct: 1218 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1258
Query: 850 QASLGPTGELAFSPATGVMGPPSMSGAG 877
S+G GE G GPP +G G
Sbjct: 1259 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1284
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 65.1 bits (157), Expect = 3e-10
Identities = 107/396 (27%), Positives = 132/396 (33%), Gaps = 75/396 (18%)
Query: 4 MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
+ PM P PP P G A P G V +V GVG + GNP P
Sbjct: 1176 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Query: 64 ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G P G G AG A P G N G V G G PG PG
Sbjct: 1228 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1285
Query: 120 --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G G G P P + A A + +Q +
Sbjct: 1286 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1337
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
+ ++ A G + GP GP PAG P G+ G+ GP G L
Sbjct: 1338 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1382
Query: 237 MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
P AGQ P G PG P + P ++ + + PG+Q +G + P T
Sbjct: 1383 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1440
Query: 290 QFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVS 349
+ G P P+ P L PGP GL QG N GS
Sbjct: 1441 GSPGAKGDGGIPGPAGP-------------LGPPGPPGLP-------GPQGPKGNKGSTG 1480
Query: 350 -YSQPGLSGPTRSIPGYPSSP-LPGNPTPPMTPSSS 383
Q G SG +PG P SP PG P+ SS
Sbjct: 1481 PAGQKGDSG----LPGPPGSPGPPGEVIQPLPILSS 1512
Score = 50.4 bits (119), Expect = 7e-06
Identities = 94/344 (27%), Positives = 115/344 (33%), Gaps = 71/344 (20%)
Query: 60 PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
P GP G P+G G AG L P G +QG G+PG
Sbjct: 773 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 821
Query: 118 PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
PG G G G G P + P+ A T+ E+
Sbjct: 822 PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 880
Query: 176 SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
Q G +G G H G RG + G P G GGV+GP G
Sbjct: 881 PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 934
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
PT G P+ G+R G PGPP Q LP ++G K
Sbjct: 935 ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 986
Query: 271 EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHR----------LPLQQGMTQSL 320
+PG++ L G Q AP + P PP P S PG R LP G
Sbjct: 987 RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGERGSAGTAGPIGLP---GRPGPQ 1041
Query: 321 SVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPG 364
PGP G P E+ A +G PG +GP S PG
Sbjct: 1042 GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS-PG 1084
Score = 48.9 bits (115), Expect = 2e-05
Identities = 83/308 (26%), Positives = 102/308 (33%), Gaps = 48/308 (15%)
Query: 57 LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
L P GP G P G PG+ G P + F GG +KG
Sbjct: 419 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 478
Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
+QQ + G PG G T G GGPG G + P +
Sbjct: 479 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 538
Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
A + G G G + GP+GP P G
Sbjct: 539 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 598
Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
+ P G+ G GP GL +P A AG+ P G PQ G PGPP Q P
Sbjct: 599 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 657
Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
QG+ + P + +G Q P A G P A P PGH Q G +
Sbjct: 658 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 707
Query: 320 LSVPGPTG 327
L PGP G
Sbjct: 708 LGPPGPQG 715
Score = 43.1 bits (100), Expect = 0.001
Identities = 109/433 (25%), Positives = 135/433 (31%), Gaps = 136/433 (31%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSP- 67
P PP P G+ + P ++ PAG V V L P GPAGSP
Sbjct: 1040 PQGPPGPAGE-----KGAPGEKGPQGPAGRDGVQGPVG----------LPGPAGPAGSPG 1084
Query: 68 ----SGSSMMPGVAG-----------GSSALTSPQCLGQQAFAEGGANKG-YVQQGVYSR 111
G PG G G L P +G A G G QQG++ +
Sbjct: 1085 EDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGP--VGAPGIAGGDGEPGPRGQQGMFGQ 1142
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G GA GF G PG +GL P
Sbjct: 1143 KGDEGARGF----PGPPGPIGLQGLPGPPG------------------------------ 1168
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPLAMN 230
++ ++ ++ G G GPRGP P G + P G G +G G
Sbjct: 1169 EKGENGDVGPMGPPGP-----------PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGE 1217
Query: 231 PTRAAGM-TPLYAGQRLP-----QHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
P A P AG P + G GPP A P G K PG +G
Sbjct: 1218 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP--GAKGP-----PGDDGPKGN-- 1268
Query: 285 APSTAQFAPSPGQPPAPSPS-------------YPGHRLPLQQGMTQSLSVPGPTGLHYK 331
P F PG P P P+ PG P G + PGP G
Sbjct: 1269 -PGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ--PGPPGPSGEAGPPGPPGKRGP 1325
Query: 332 P----TEQFNGQGASFNGGSVSYSQPGLSGPT--------------RSIPG-YPSSPLPG 372
P E G+ + G + + PG +GP R IPG LPG
Sbjct: 1326 PGAAGAEGRQGEKGA-KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1384
Query: 373 -----NPTPPMTP 380
P PM P
Sbjct: 1385 AAGQDGPPGPMGP 1397
Score = 41.6 bits (96), Expect = 0.003
Identities = 110/437 (25%), Positives = 140/437 (32%), Gaps = 95/437 (21%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
P GP G P G PG GG P G + F +G +KG+ +G G P
Sbjct: 530 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 585
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G PG G G G GLP A + T A +A +
Sbjct: 586 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 634
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ G MG Q Q G P +P P G G GP G LA P
Sbjct: 635 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 687
Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
A P + G+ + + G GPP Q P PR +G+K + E
Sbjct: 688 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 747
Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
+ G L+G G+ P + P P PS P YP
Sbjct: 748 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 807
Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGP--TRSIPG 364
G + P +G T PG G + +G + G Q G +GP +R G
Sbjct: 808 GRQGP--KGSTGFPGFPGANG-------EKGARGVAGKPG--PRGQRGPTGPRGSRGARG 856
Query: 365 YPSSPLP----GNPTPPMTPSSSVPYMSPNQEV--KSPFLPDLKPNLNSLHSSPSGSGPC 418
P P G PP P P P V P P P + L P G
Sbjct: 857 PTGKPGPKGTSGGDGPPGPPGERGP-QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET 915
Query: 419 DELRLTFPVRDGVVLEP 435
T P G V+ P
Sbjct: 916 GFQGKTGPPGPGGVVGP 932
Score = 38.9 bits (89), Expect = 0.022
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 854
LP + P G L P PG PG + + PPGP+ + P PP + + G L G
Sbjct: 605 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 664
Query: 855 PTGELAFSPATGVMGPPSMSGAGEAPEP 882
P G + G G P ++G A P
Sbjct: 665 PQGPIGPPGEKGPQGKPGLAGLPGADGP 692
Score = 37.7 bits (86), Expect = 0.049
Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)
Query: 724 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 779
GP P P PP P P+ G G G + PP P+ PGPP
Sbjct: 1270 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1324
Query: 780 ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 823
+ E P + P G P PG GL
Sbjct: 1325 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1384
Query: 824 TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 872
+ PPGP P P S+ G L G GE G G P
Sbjct: 1385 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1444
Query: 873 MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
G G P PA L P GPP LP
Sbjct: 1445 AKGDGGIPGPAGPLGPP-----------GPPGLP 1467
Score = 37.0 bits (84), Expect = 0.084
Identities = 56/193 (29%), Positives = 71/193 (36%), Gaps = 43/193 (22%)
Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
++ +GA G GQ ++ G GP GP+ PAG +MGP GL PT
Sbjct: 377 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 424
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
G G R P G PG P A LP PG + +Y +
Sbjct: 425 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 465
Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQP 353
+ P S + LQQ PGP GL +P G G+S G P
Sbjct: 466 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP-GPVGGPGSS--GAKGESGDP 519
Query: 354 GLSGPTRSIPGYP 366
G GP R + G P
Sbjct: 520 GPQGP-RGVQGPP 531
Score = 35.4 bits (80), Expect = 0.25
Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 795
P VPA +D +S G G + E P+ GPP + + I
Sbjct: 364 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 413
Query: 796 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 836
M P G PT PG PG L PPG L
Sbjct: 414 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 464
Query: 837 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 882
P +++++ QA L GP G + + G +G P SGA GE+ +P
Sbjct: 465 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 519
Score = 35.4 bits (80), Expect = 0.25
Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)
Query: 725 PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 778
PGAA P P+ PP +P PG PG PP T G
Sbjct: 1383 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1442
Query: 779 PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 838
P IP PAG L P PG PGL PGPQ
Sbjct: 1443 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1474
Query: 839 NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 882
N + S GP G+ S G+ GPP G GE +P
Sbjct: 1475 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1506
Score = 34.7 bits (78), Expect = 0.42
Identities = 86/350 (24%), Positives = 102/350 (29%), Gaps = 58/350 (16%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
P GP G P GS G AG + + P G Q E GA QG R G
Sbjct: 1010 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1068
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G G G AG PG G P ++ A A +
Sbjct: 1069 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1128
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ Q G G Q G P P G+ G+ GP G
Sbjct: 1129 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1172
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
+ P+ G PGPP P QG + PG GG A
Sbjct: 1173 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1221
Query: 293 PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSY- 350
+PG P P G R ++G GP G P + G N G V +
Sbjct: 1222 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGD----DGPKGNPGPVGFP 1275
Query: 351 ---SQPGLSGPT-----------RSIPGYPSSPLP-GNPTPPMTPSSSVP 385
PG GP PG P P P G PP P P
Sbjct: 1276 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGP 1325
Score = 34.3 bits (77), Expect = 0.55
Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 720 IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 777
+ +GP P P P P PG S G G E P P E G
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1233
Query: 778 PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 835
P EK A P P G P + G G + +G P PGP
Sbjct: 1234 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1281
Query: 836 HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 876
P PA + +G GP+GE G GPP +GA
Sbjct: 1282 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1331
Score = 32.3 bits (72), Expect = 2.1
Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 790
P PP + P PG PG + F PGPP PI Q +P
Sbjct: 1109 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1166
Query: 791 LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 849
P + G + P PG PG P GPQ + ++ P S+G
Sbjct: 1167 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1207
Query: 850 QASLGPTGELAFSPATGVMGPPSMSGAG 877
S+G GE G GPP +G G
Sbjct: 1208 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1233
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 65.1 bits (157), Expect = 3e-10
Identities = 107/396 (27%), Positives = 132/396 (33%), Gaps = 75/396 (18%)
Query: 4 MNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGP 63
+ PM P PP P G A P G V +V GVG + GNP P
Sbjct: 1215 VGPMGPPGPPGPRGPQG--------PNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Query: 64 ----AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G P G G AG A P G N G V G G PG PG
Sbjct: 1267 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV--GFPGDPGPPGEPG 1324
Query: 120 --FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G G G G P P + A A + +Q +
Sbjct: 1325 PAGQDGVGGDKGEDGDPGQPGPP--------GPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1376
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGM-NPTGIGGVMGPSGLSPLAMNPTRAAG 236
+ ++ A G + GP GP PAG P G+ G+ GP G L
Sbjct: 1377 KGAKGEAGAEGPPGKT------GPVGPQGPAGKPGPEGLRGIPGPVGEQGL--------- 1421
Query: 237 MTPLYAGQRLP--QHGYPGPPQAQPLPRQGVKRTYSEVY-----PGQQYLQGGQYAPSTA 289
P AGQ P G PG P + P ++ + + PG+Q +G + P T
Sbjct: 1422 --PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQ 1479
Query: 290 QFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVS 349
+ G P P+ P L PGP GL QG N GS
Sbjct: 1480 GSPGAKGDGGIPGPAGP-------------LGPPGPPGLP-------GPQGPKGNKGSTG 1519
Query: 350 -YSQPGLSGPTRSIPGYPSSP-LPGNPTPPMTPSSS 383
Q G SG +PG P SP PG P+ SS
Sbjct: 1520 PAGQKGDSG----LPGPPGSPGPPGEVIQPLPILSS 1551
Score = 50.4 bits (119), Expect = 7e-06
Identities = 94/344 (27%), Positives = 115/344 (33%), Gaps = 71/344 (20%)
Query: 60 PMGPAG--SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
P GP G P+G G AG L P G +QG G+PG
Sbjct: 812 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG-----------RQGPKGSTGFPGF 860
Query: 118 PGFTTGYAGGPGGLGLPSHAAR--PSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
PG G G G G P + P+ A T+ E+
Sbjct: 861 PG-ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 919
Query: 176 SQELSQYGAMG-------AGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPL 227
Q G +G G H G RG + G P G GGV+GP G
Sbjct: 920 PQ--GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG---- 973
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP----RQGVKRTYS------------- 270
PT G P+ G+R G PGPP Q LP ++G K
Sbjct: 974 ---PTGETG--PI--GER-GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGL 1025
Query: 271 EVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHR----------LPLQQGMTQSL 320
+PG++ L G Q AP + P PP P S PG R LP G
Sbjct: 1026 RGFPGERGLPGAQGAPG-LKGGEGPQGPPGPVGS-PGERGSAGTAGPIGLP---GRPGPQ 1080
Query: 321 SVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPG 364
PGP G P E+ A +G PG +GP S PG
Sbjct: 1081 GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS-PG 1123
Score = 48.9 bits (115), Expect = 2e-05
Identities = 83/308 (26%), Positives = 102/308 (33%), Gaps = 48/308 (15%)
Query: 57 LGNPMGPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGG-ANKG----------- 102
L P GP G P G PG+ G P + F GG +KG
Sbjct: 458 LQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 517
Query: 103 -YVQQGVYSRGGYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
+QQ + G PG G T G GGPG G + P +
Sbjct: 518 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 577
Query: 160 ATATATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAG--------- 209
A + G G G + GP+GP P G
Sbjct: 578 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 637
Query: 210 -MNPTGIGGVMGPSGL-----SPLAMNPTRAAGMT--PLYAGQRLPQHGYPGPPQAQPLP 261
+ P G+ G GP GL +P A AG+ P G PQ G PGPP Q P
Sbjct: 638 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNP 696
Query: 262 -RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGH-RLPLQQGMTQS 319
QG+ + P + +G Q P A G P A P PGH Q G +
Sbjct: 697 GPQGLPGPQGPIGPPGE--KGPQGKPGLA------GLPGADGP--PGHPGKEGQSGEKGA 746
Query: 320 LSVPGPTG 327
L PGP G
Sbjct: 747 LGPPGPQG 754
Score = 43.1 bits (100), Expect = 0.001
Identities = 109/433 (25%), Positives = 135/433 (31%), Gaps = 136/433 (31%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSP- 67
P PP P G+ + P ++ PAG V V L P GPAGSP
Sbjct: 1079 PQGPPGPAGE-----KGAPGEKGPQGPAGRDGVQGPVG----------LPGPAGPAGSPG 1123
Query: 68 ----SGSSMMPGVAG-----------GSSALTSPQCLGQQAFAEGGANKG-YVQQGVYSR 111
G PG G G L P +G A G G QQG++ +
Sbjct: 1124 EDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGP--VGAPGIAGGDGEPGPRGQQGMFGQ 1181
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G GA GF G PG +GL P
Sbjct: 1182 KGDEGARGF----PGPPGPIGLQGLPGPPG------------------------------ 1207
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMN-PTGIGGVMGPSGLSPLAMN 230
++ ++ ++ G G GPRGP P G + P G G +G G
Sbjct: 1208 EKGENGDVGPMGPPGP-----------PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGE 1256
Query: 231 PTRAAGM-TPLYAGQRLP-----QHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
P A P AG P + G GPP A P G K PG +G
Sbjct: 1257 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP--GAKGP-----PGDDGPKGN-- 1307
Query: 285 APSTAQFAPSPGQPPAPSPS-------------YPGHRLPLQQGMTQSLSVPGPTGLHYK 331
P F PG P P P+ PG P G + PGP G
Sbjct: 1308 -PGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ--PGPPGPSGEAGPPGPPGKRGP 1364
Query: 332 P----TEQFNGQGASFNGGSVSYSQPGLSGPT--------------RSIPG-YPSSPLPG 372
P E G+ + G + + PG +GP R IPG LPG
Sbjct: 1365 PGAAGAEGRQGEKGA-KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1423
Query: 373 -----NPTPPMTP 380
P PM P
Sbjct: 1424 AAGQDGPPGPMGP 1436
Score = 41.6 bits (96), Expect = 0.003
Identities = 110/437 (25%), Positives = 140/437 (32%), Gaps = 95/437 (21%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEG----GANKGYVQQGVYSRGGYP 115
P GP G P G PG GG P G + F +G +KG+ +G G P
Sbjct: 569 PPGPTGKP-GKRGRPGADGGRGMPGEPGAKGDRGF-DGLPGLPGDKGH--RGERGPQGPP 624
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G PG G G G GLP A + T A +A +
Sbjct: 625 GPPGDDGMRGEDGEIGPRGLPGEAG-----------PRGLLGPRGTPGAPGQPGMAGVDG 673
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ G MG Q Q G P +P P G G GP G LA P
Sbjct: 674 PPGPK----GNMGP-QGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLP-- 726
Query: 234 AAGMTPLYAGQ--RLPQHGYPGPPQAQ-----PLPR--------QGVKRTYSEV------ 272
A P + G+ + + G GPP Q P PR +G+K + E
Sbjct: 727 GADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 786
Query: 273 -YPGQQYLQG-----------GQYAPSTAQFAPSPGQPPAPS--------------PSYP 306
+ G L+G G+ P + P P PS P YP
Sbjct: 787 GFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 846
Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGP--TRSIPG 364
G + P +G T PG G + +G + G Q G +GP +R G
Sbjct: 847 GRQGP--KGSTGFPGFPGANG-------EKGARGVAGKPG--PRGQRGPTGPRGSRGARG 895
Query: 365 YPSSPLP----GNPTPPMTPSSSVPYMSPNQEV--KSPFLPDLKPNLNSLHSSPSGSGPC 418
P P G PP P P P V P P P + L P G
Sbjct: 896 PTGKPGPKGTSGGDGPPGPPGERGP-QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET 954
Query: 419 DELRLTFPVRDGVVLEP 435
T P G V+ P
Sbjct: 955 GFQGKTGPPGPGGVVGP 971
Score = 38.9 bits (89), Expect = 0.022
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGL-HTSNLGAPPGPQLH---HSNP-PPASRQSLGQASL-G 854
LP + P G L P PG PG + + PPGP+ + P PP + + G L G
Sbjct: 644 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 703
Query: 855 PTGELAFSPATGVMGPPSMSGAGEAPEP 882
P G + G G P ++G A P
Sbjct: 704 PQGPIGPPGEKGPQGKPGLAGLPGADGP 731
Score = 37.7 bits (86), Expect = 0.049
Identities = 54/214 (25%), Positives = 61/214 (28%), Gaps = 47/214 (21%)
Query: 724 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP---- 779
GP P P PP P P+ G G G + PP P+ PGPP
Sbjct: 1309 GPVGFPGDP-GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG----PSGEAGPPGPPGKRG 1363
Query: 780 ---PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH------------- 823
+ E P + P G P PG GL
Sbjct: 1364 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1423
Query: 824 TSNLGAPPGPQLHHSNP----PPASRQSLGQASL-------GPTGELAFSPATGVMGPPS 872
+ PPGP P P S+ G L G GE G G P
Sbjct: 1424 AAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPG 1483
Query: 873 MSGAGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
G G P PA L P GPP LP
Sbjct: 1484 AKGDGGIPGPAGPLGPP-----------GPPGLP 1506
Score = 37.0 bits (84), Expect = 0.084
Identities = 56/193 (29%), Positives = 71/193 (36%), Gaps = 43/193 (22%)
Query: 179 LSQYGAMGA-GQSFNSQFLQHG----GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
++ +GA G GQ ++ G GP GP+ PAG +MGP GL PT
Sbjct: 416 INGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAG--------IMGPPGL----QGPTG 463
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
G G R P G PG P A LP PG + +Y +
Sbjct: 464 PPG----DPGDRGPP-GRPGLPGADGLPGP----------PGTMLMLPFRYGGDGS---- 504
Query: 294 SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQP 353
+ P S + LQQ PGP GL +P G G+S G P
Sbjct: 505 ---KGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP-GPVGGPGSS--GAKGESGDP 558
Query: 354 GLSGPTRSIPGYP 366
G GP R + G P
Sbjct: 559 GPQGP-RGVQGPP 570
Score = 35.4 bits (80), Expect = 0.25
Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 47/175 (26%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSE 795
P VPA +D +S G G + E P+ GPP + + I
Sbjct: 403 PGVPAETDITE--TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI-------- 452
Query: 796 KSTACLPSQMAPAGHLDPTHNPGTPGLH----------TSNLGAPPGPQL---------H 836
M P G PT PG PG L PPG L
Sbjct: 453 ---------MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG 503
Query: 837 HSNPPPASRQSLGQASL--------GPTGELAFSPATGVMGPPSMSGA-GEAPEP 882
P +++++ QA L GP G + + G +G P SGA GE+ +P
Sbjct: 504 SKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 558
Score = 35.4 bits (80), Expect = 0.25
Identities = 48/165 (29%), Positives = 54/165 (32%), Gaps = 48/165 (29%)
Query: 725 PGAA----PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPGP 778
PGAA P P+ PP +P PG PG PP T G
Sbjct: 1422 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1481
Query: 779 PPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHS 838
P IP PAG L P PG PGL PGPQ
Sbjct: 1482 PGAKGDGGIPG-----------------PAGPLGP---PGPPGL--------PGPQGPKG 1513
Query: 839 NPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEP 882
N + S GP G+ S G+ GPP G GE +P
Sbjct: 1514 N----------KGSTGPAGQKGDS---GLPGPPGSPGPPGEVIQP 1545
Score = 34.7 bits (78), Expect = 0.42
Identities = 86/350 (24%), Positives = 102/350 (29%), Gaps = 58/350 (16%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA----FAEGGANKGYVQQGVYSRGGYP 115
P GP G P GS G AG + + P G Q E GA QG R G
Sbjct: 1049 PQGPPG-PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1107
Query: 116 GAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQE 173
G G G AG PG G P ++ A A +
Sbjct: 1108 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGD 1167
Query: 174 KQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
+ Q G G Q G P P G+ G+ GP G
Sbjct: 1168 GEPGPRGQQGMFG----------QKGDEGARGFPGPPGPIGLQGLPGPPG------EKGE 1211
Query: 234 AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYS-EVYPGQQYLQGGQYAPSTAQFA 292
+ P+ G PGPP P QG + PG GG A
Sbjct: 1212 NGDVGPM---------GPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA 1260
Query: 293 PSPGQPPAPSPSYP-GHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSY- 350
+PG P P G R ++G GP G P + G N G V +
Sbjct: 1261 GNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGD----DGPKGNPGPVGFP 1314
Query: 351 ---SQPGLSGPT-----------RSIPGYPSSPLP-GNPTPPMTPSSSVP 385
PG GP PG P P P G PP P P
Sbjct: 1315 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGP 1364
Score = 34.3 bits (77), Expect = 0.55
Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 720 IAALGPGA--APFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPG 777
+ +GP P P P P PG S G G E P P E G
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP--GEAGVG 1272
Query: 778 PPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP--PGPQL 835
P EK A P P G P + G G + +G P PGP
Sbjct: 1273 GPKGE----------RGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPP- 1320
Query: 836 HHSNPPPASRQSLG-----------QASLGPTGELAFSPATGVMGPPSMSGA 876
P PA + +G GP+GE G GPP +GA
Sbjct: 1321 --GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1370
Score = 32.3 bits (72), Expect = 2.1
Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSS 790
P PP + P PG PG + F PGPP PI Q +P
Sbjct: 1148 PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGF-PGPPGPIGLQG-LPGP 1205
Query: 791 LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ-LHHSNPPPASRQSLG 849
P + G + P PG PG P GPQ + ++ P S+G
Sbjct: 1206 -----------PGEKGENGDVGPMGPPGPPG--------PRGPQGPNGADGPQGPPGSVG 1246
Query: 850 QASLGPTGELAFSPATGVMGPPSMSGAG 877
S+G GE G GPP +G G
Sbjct: 1247 --SVGGVGEKGEPGEAGNPGPPGEAGVG 1272
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 63.5 bits (153), Expect = 8e-10
Identities = 86/320 (26%), Positives = 111/320 (34%), Gaps = 50/320 (15%)
Query: 58 GNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGA 117
G P AG PS + AG S T P+ G GG GY + + GY
Sbjct: 337 GEPSPGAGEPSKAGPSGATAGASGRATGPEAAG--GGGAGGGGGGY--RPIIQSPGYKTG 392
Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G GY GG P +T Q+ A A A A+ A A Q Q
Sbjct: 393 KG---GYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQ 449
Query: 178 ELSQYGAMGAG------QSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
L A G G Q + GGP P P+G P G+ + +P
Sbjct: 450 GLLGPQAYGQGFGGGQAQDLSKAPSYSGGP--PQPPSGPPPPGLATCQ--------SYSP 499
Query: 232 TRAAGMTPLYAGQRLPQHGYPGP-PQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPST-- 288
+ G LY Q P YPGP +Q LP +YS + GG + PS+
Sbjct: 500 DQLQGQ--LYGVQGEP---YPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLG 554
Query: 289 -------------AQFAPSPGQPP-APSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTE 334
Q P+ G+PP SP PG L L+ PG G +
Sbjct: 555 GGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPG-AGSYAAGAG 613
Query: 335 QFNGQGASFNGGSVSYSQPG 354
+ G+G GS + PG
Sbjct: 614 GYKGKG----DGSELLAGPG 629
Score = 40.0 bits (92), Expect = 0.010
Identities = 49/184 (26%), Positives = 62/184 (33%), Gaps = 56/184 (30%)
Query: 247 PQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYP 306
P PGPP PLP G+ S P L+ + P T AP+P P P P P
Sbjct: 1426 PAAAVPGPP---PLP--GLPSANSNGTPEPPLLE--EKPPPTPPPAPTPQPQPPPPPPPP 1478
Query: 307 GHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYP 366
LP S P L PT S P P
Sbjct: 1479 QPALP---------------------------------------SPPPLVAPTPSSPPPP 1499
Query: 367 SSPLPGNPT----PPMTPSSSVPYMSPNQE-----VKSPFLPDLKP-NLNSLHSSPSGSG 416
P P P PP P ++ P +P +E + P LPD +P +L + + G
Sbjct: 1500 PLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCG 1559
Query: 417 PCDE 420
DE
Sbjct: 1560 ETDE 1563
Score = 38.9 bits (89), Expect = 0.022
Identities = 42/192 (21%), Positives = 64/192 (33%), Gaps = 37/192 (19%)
Query: 202 RGPSVPA--GMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQP 259
+ P+VP+ G GGV+GP+GL P P R PGPP P
Sbjct: 195 QAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYR------------------PGPPDPPP 236
Query: 260 LPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQS 319
PR + Q +P F+ + PP P + P ++ +
Sbjct: 237 PPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPERALPRQDTVIKHYQRPA 296
Query: 320 LSVPGPTGLHYKPTEQFNGQGASF--------------NGGSVSYSQPGLSGPTRSIPGY 365
+ P P + + G S+ GG S PG P+++ P
Sbjct: 297 SAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACSPLGGGEPS---PGAGEPSKAGPSG 353
Query: 366 PSSPLPGNPTPP 377
++ G T P
Sbjct: 354 ATAGASGRATGP 365
Score = 38.9 bits (89), Expect = 0.022
Identities = 38/122 (31%), Positives = 45/122 (36%), Gaps = 28/122 (22%)
Query: 725 PGAAPFAPLQPPSVPAPSDYPGQGSSFLG----PGTFPESFPPTTPSTPTLAEFTPGPPP 780
P P AP +VP P PG S+ P E PPT P PT + P PPP
Sbjct: 1419 PDGPPLAPAA--AVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPT-PQPQPPPPP 1475
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
Q +PS P +AP P+ P P L PP P + P
Sbjct: 1476 PPPQPALPSP-----------PPLVAPT----PSSPPPPP------LPPPPPPAMPSPPP 1514
Query: 841 PP 842
PP
Sbjct: 1515 PP 1516
Score = 33.9 bits (76), Expect = 0.71
Identities = 83/366 (22%), Positives = 112/366 (30%), Gaps = 53/366 (14%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
G G GS ++ G G + T + Q + + G G GA +
Sbjct: 614 GYKGKGDGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPR--TSGADGLVGEDGAADAS 671
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATV----AALQEKQSQ 177
G G G G P + + Q +V +A+ ATA + L+EK+
Sbjct: 672 KGLGGSGGAGGPPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRLKEKKKG 731
Query: 178 E----------LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPL 227
+ GAG FLQ P P PT P GL
Sbjct: 732 PERGGETPEGLATSVVHYGAGAKELGAFLQKSPPPPPPTAQSTQPT-------PHGLLLE 784
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPS 287
A P LP P PPQ P V P + P+
Sbjct: 785 AGGPD-------------LPLVLPPPPPQLLP----SVLSHAPSPSPSASKVGVHLLEPA 827
Query: 288 TAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGS 347
T AP P PP P P P L L+ + P +P E + GA
Sbjct: 828 TRDGAPQPPPPPPPPP--PPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGAMQELLG 885
Query: 348 VSYSQPGLSGPTRSIP---------GYPSSPLP-GNPTPPMTPSSSVPYM-SPNQEVKSP 396
P G T P G SP P G P P +S+ + S Q+ +
Sbjct: 886 ALEPLPPAPGDTGVGPPNSEGKDPAGAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERS 945
Query: 397 FLPDLK 402
F P ++
Sbjct: 946 FFPTME 951
Score = 33.5 bits (75), Expect = 0.93
Identities = 46/222 (20%), Positives = 75/222 (33%), Gaps = 31/222 (13%)
Query: 681 KPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMI-----------------AAL 723
+P PV + +++ P P + L PS + A L
Sbjct: 160 RPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAGL 219
Query: 724 GPGAAP-FAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPIS 782
GP P + P P P P P Q + + ++P + PGPPP
Sbjct: 220 GPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPE 279
Query: 783 YQSDIPSSLLTS-EKSTACLPSQMAPAGHLDPTH---NPGTPGL-HTSNLGAPPGPQLHH 837
+++ ++ + P P H + P + H +NL P L
Sbjct: 280 RALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACSP---LGG 336
Query: 838 SNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEA 879
P P + + + GP+G A + A+G P +G G A
Sbjct: 337 GEPSPGAGE---PSKAGPSG--ATAGASGRATGPEAAGGGGA 373
Score = 32.7 bits (73), Expect = 1.6
Identities = 37/136 (27%), Positives = 44/136 (32%), Gaps = 22/136 (16%)
Query: 745 PGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQ 804
PGQ LGP + + F + A G PP P L T + + P Q
Sbjct: 445 PGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGLATCQSYS---PDQ 501
Query: 805 MAPAGHLDPTHNPGTPGLHTSNLGAP-PGPQLHHSNPPPASRQSLGQASLGPTGELAFSP 863
+ G G P PGP H P AS P A S
Sbjct: 502 L--------------QGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSP----ALSG 543
Query: 864 ATGVMGPPSMSGAGEA 879
G GP S+ G GEA
Sbjct: 544 HGGGWGPSSLGGGGEA 559
Score = 31.2 bits (69), Expect = 4.6
Identities = 48/166 (28%), Positives = 60/166 (36%), Gaps = 36/166 (21%)
Query: 732 PLQPPSVPAPSD----------------YPGQGSSFLGPGTFPESFPPTTPSTPTLAEFT 775
P QPPS P P Y QG + GP + P +PS L+ T
Sbjct: 479 PPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPS---LSYST 535
Query: 776 PGPPPISYQSD--IPSSL---LTSEKSTACLPSQMAPA-GHLDPTHNPGTPGLHTSNLGA 829
P +S PSSL + S P Q PA G +PG PG + S++ A
Sbjct: 536 GHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLA 595
Query: 830 PPGPQLHHSNPPPASRQSLGQASL---GPTGELAFSPATGVMGPPS 872
P L PP A + G G EL P GPP+
Sbjct: 596 -SAPFL---APPGAGSYAAGAGGYKGKGDGSELLAGPG----GPPA 633
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 61.6 bits (148), Expect = 3e-09
Identities = 114/423 (26%), Positives = 139/423 (32%), Gaps = 77/423 (18%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP--MGPAGS 66
P P AP G P + A+ P G G+ ++ G P GP G
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPG- 248
Query: 67 PSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAG 126
P G+ +PG AG P G + F+ KG G G PG+PG G G
Sbjct: 249 PQGARGLPGTAG------LPGMKGHRGFSGLDGAKG--DAGPAGPKGEPGSPG-ENGAPG 299
Query: 127 GPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA-TATATVAALQEKQSQELSQYGAM 185
G GLP RP A A AA T A GA+
Sbjct: 300 QMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP----------GAV 349
Query: 186 GAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQR 245
GA Q GPRG P G+ G G GP+G + A NP
Sbjct: 350 GAKGEAGPQ-----GPRGSEGPQGVR--GEPGPPGPAGAAGPAGNPGA------------ 390
Query: 246 LPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSY 305
G PG A P G+ +PG + G Q PG PP P +
Sbjct: 391 ---DGQPGAKGANGAP--GIAGAPG--FPGARGPSGPQ----------GPGGPPGPKGNS 433
Query: 306 PGHRLPLQQGMTQSLSVPGPTGLHYK--PTEQFNGQGASFNGGSVSYSQPGLSGPTRSIP 363
P +G T + PGP G+ P + +GA G GL GP
Sbjct: 434 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPT-----GLPGPPGERG 488
Query: 364 GYPSSPLPG-----NPTPPM----TPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSG 414
G S PG P P +P + P SP E P L P L SP
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG-EAGRPGEAGL-PGAKGLTGSPGS 546
Query: 415 SGP 417
GP
Sbjct: 547 PGP 549
Score = 61.2 bits (147), Expect = 4e-09
Identities = 101/384 (26%), Positives = 127/384 (33%), Gaps = 73/384 (19%)
Query: 5 NPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA 64
NP P A +G+ P A P+G Q G P GP
Sbjct: 387 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP----------------QGPGGPPGPK 430
Query: 65 GSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGY 124
G+ SG PG G + A P +G Q +G ++G G G PG G
Sbjct: 431 GN-SGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEG--KRGARGEPGPTGLPG-PPGE 486
Query: 125 AGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGA 184
GGPG G P A A + A + + + E GA
Sbjct: 487 RGGPGSRGFPG---------ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537
Query: 185 MGAGQSFNSQFLQHGGPRGPSVPAGMN----PTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
G S S G GP PAG + P G G G +G+ P AAG P
Sbjct: 538 KGLTGSPGSP--GPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFP-GPKGAAG-EPG 593
Query: 241 YAGQRLPQHGYPGPPQAQ-PLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPP 299
AG+R G PGPP A P + G P + G+ P A SPG
Sbjct: 594 KAGER----GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP-----AGSPGFQG 644
Query: 300 APSPSYPGHRL--PLQQGMTQSLSVPGPTGLHYK--------------PTEQFNGQGASF 343
P P+ P P +QG+ L PGP+G + P GA
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPG 704
Query: 344 NGGSV----------SYSQPGLSG 357
N G+ S PGL G
Sbjct: 705 NDGAKGDAGAPGAPGSQGAPGLQG 728
Score = 55.1 bits (131), Expect = 3e-07
Identities = 102/391 (26%), Positives = 128/391 (32%), Gaps = 114/391 (29%)
Query: 12 PPAPHGDGSFAYESVPWQQSATQ---PAGSLSVVTTVWGVGNATQSQVLG-----NPMGP 63
P AP G+ + +P ++ A P G G+ + V G P GP
Sbjct: 715 PGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP 774
Query: 64 AGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
AG+P G S G AG + A +P G+ PG PG
Sbjct: 775 AGAPGDKGESGPSGPAGPTGARGAPGDRGE-----------------------PGPPG-P 810
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
G+AG PG G P P
Sbjct: 811 AGFAGPPGADGQPGAKGEP---------------------------------------GD 831
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG-MNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL 240
GA G GP GP+ PAG P G G G G A P A G P
Sbjct: 832 AGAKG-----------DAGPPGPAGPAGPPGPIGNVGAPGAKGARGSA-GPPGATGF-PG 878
Query: 241 YAGQRLP-----QHGYPGPPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPSTAQFAPS 294
AG+ P G PGPP P ++G K E P G+ G P A S
Sbjct: 879 AAGRVGPPGPSGNAGPPGPP--GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 936
Query: 295 PG-QPPAPSPSYPGHR----------LPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASF 343
PG PA +P PG + LP Q+G +PGP+G +P +Q +
Sbjct: 937 PGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSG---EPGKQGPSGASGE 993
Query: 344 NGGSVSYSQPGLSGP-----TRSIPGYPSSP 369
G PGL+GP PG SP
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSP 1024
Score = 45.4 bits (106), Expect = 2e-04
Identities = 107/416 (25%), Positives = 131/416 (31%), Gaps = 91/416 (21%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG--S 66
P PP P G ES P + PAG G A + P GPAG
Sbjct: 768 PIGPPGPAGAPGDKGESGP-----SGPAGPT-------GARGAPGDRGEPGPPGPAGFAG 815
Query: 67 PSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGAPGFTTGYA 125
P G+ PG G P G + A G G G PGA G G A
Sbjct: 816 PPGADGQPGAKG------EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKG-ARGSA 868
Query: 126 GGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAM 185
G PG G P A R A A + G
Sbjct: 869 GPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAG--------------------KEGGKG 908
Query: 186 GAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYA--G 243
G++ + GP GP PAG G G GP+G +P P AG + G
Sbjct: 909 PRGETGPAGRPGEVGPPGPPGPAG--EKGSPGADGPAG-APGTPGPQGIAGQRGVVGLPG 965
Query: 244 QRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYP----------------GQQYLQGGQYAP 286
QR + G+PG P P +QG E P G++ G + +P
Sbjct: 966 QR-GERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSP 1024
Query: 287 -------------STAQFAP--SPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYK 331
T P +PG P AP P P + G GP G
Sbjct: 1025 GRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGK----SGDRGETGPAGPAG---- 1076
Query: 332 PTEQFNGQG-ASFNGGSVSYSQPGLSGPTRSIPGYPS-SPLPGNPTPPMTPSSSVP 385
P +G A G + G G R I G+ S L G P PP +P P
Sbjct: 1077 PVGPVGARGPAGPQGPRGDKGETGEQG-DRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131
Score = 45.4 bits (106), Expect = 2e-04
Identities = 81/305 (26%), Positives = 98/305 (32%), Gaps = 42/305 (13%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP--MGPAG- 65
P PP P G+ A PAG+ T G A Q V+G P G G
Sbjct: 924 PPGPPGPAGEKG--------SPGADGPAGAPG---TPGPQGIAGQRGVVGLPGQRGERGF 972
Query: 66 ----SPSGSSMMPGVAGGSSALTSPQCLGQQAFA----EGGANKGYVQQGVYSRGGYPGA 117
PSG G +G S P +G A E G +G R G PGA
Sbjct: 973 PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032
Query: 118 PGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
G TG AG PG G P A A A A +
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092
Query: 176 SQELSQYGAMG-AGQSFNSQFLQHGGPRGP-SVPAGMNPTGIGGVMGPSGLS-------- 225
+ + G G G + F GP GP P P+G G GP G
Sbjct: 1093 RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGK 1152
Query: 226 ------PLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYL 279
P + P G T AG P G PGPP P G ++ P ++
Sbjct: 1153 DGLNGLPGPIGPPGPRGRTG-DAGPVGPP-GPPGPPGPPGPPSAGFDFSFLPQPPQEKAH 1210
Query: 280 QGGQY 284
GG+Y
Sbjct: 1211 DGGRY 1215
Score = 40.8 bits (94), Expect = 0.006
Identities = 66/219 (30%), Positives = 74/219 (33%), Gaps = 60/219 (27%)
Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGY-------- 251
GPRGP PAG P G G+ G GL P P G P G PQ Y
Sbjct: 118 GPRGPRGPAG--PPGRDGIPGQPGL-PGPPGPPGPPG-PPGLGGNFAPQLSYGYDEKSTG 173
Query: 252 ----PGP-----PQAQPLPRQGVKRTYSEVYPGQQYLQG--GQYAPSTAQFAPSPGQPPA 300
PGP P+ P P PG Q QG G+ A P PP
Sbjct: 174 GISVPGPMGPSGPRGLPGPPGA---------PGPQGFQGPPGEPGEPGASGPMGPRGPPG 224
Query: 301 P-----------SPSYPGHRLPLQQGMTQSLSVPGPTGL-HYKPTEQFNG-QGASFNGGS 347
P P PG R P G + +PG GL K F+G GA + G
Sbjct: 225 PPGKNGDDGEAGKPGRPGERGP--PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 282
Query: 348 V----------SYSQPGLSGPTRSIPGYPSSPLPGNPTP 376
PG GP R +PG PG P P
Sbjct: 283 AGPKGEPGSPGENGAPGQMGP-RGLPG--ERGRPGAPGP 318
Score = 40.0 bits (92), Expect = 0.010
Identities = 50/175 (28%), Positives = 59/175 (33%), Gaps = 23/175 (13%)
Query: 732 PLQPPS-VPAPSDYPGQGSSFLGPGTFPESFPPTT--PSTPTLAEFTPGPPPISYQSDIP 788
P+ PP AP D G S T P P P A F GPP Q
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFA-GPPGADGQPGAK 826
Query: 789 SSLLTS-EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGA----------------PP 831
+ K A P PAG P N G PG + A PP
Sbjct: 827 GEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886
Query: 832 GPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEPALD 885
GP ++ PP + + GP GE + G +GPP G AGE P D
Sbjct: 887 GPS-GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGAD 940
Score = 38.9 bits (89), Expect = 0.022
Identities = 49/186 (26%), Positives = 61/186 (32%), Gaps = 26/186 (13%)
Query: 735 PPSVPAPSDYPGQGSSFLGPGTFPESFPPT------TPSTPTLAEFTPGPP----PISYQ 784
PP P P PG G +F ++ T P P+ PGPP P +Q
Sbjct: 143 PPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQ 202
Query: 785 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH--TSNLGAPPGPQLHHSNPPP 842
P P + +G + P PG PG + G P P P
Sbjct: 203 GP-PGE-----------PGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ 250
Query: 843 ASRQSLGQASL-GPTGELAFSPATGVMGPPSMSG-AGEAPEPALDLLPELTNPDELLSYL 900
+R G A L G G FS G G +G GE P + P P L
Sbjct: 251 GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER 310
Query: 901 GPPDLP 906
G P P
Sbjct: 311 GRPGAP 316
Score = 37.4 bits (85), Expect = 0.065
Identities = 46/159 (28%), Positives = 58/159 (36%), Gaps = 29/159 (18%)
Query: 725 PGAA-PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISY 783
PGA+ P P PP P + G+ PG E PP P A PG
Sbjct: 211 PGASGPMGPRGPPGPPGKNGDDGEAGK---PGRPGERGPPG----PQGARGLPGT----- 258
Query: 784 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP--GPQLHHSNPP 841
+ +P + + + L AG P PG+PG + GAP GP+
Sbjct: 259 -AGLPG--MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN----GAPGQMGPR-----GL 306
Query: 842 PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAP 880
P R G GP G ATG GPP +G P
Sbjct: 307 PGERGRPGAP--GPAGARGNDGATGAAGPPGPTGPAGPP 343
Score = 36.6 bits (83), Expect = 0.11
Identities = 43/161 (26%), Positives = 53/161 (32%), Gaps = 20/161 (12%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFP--PTTPSTPTLAEFTPGPPPISYQSDIPS 789
P PP P PG G E+ P P P P A GP Q
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP-----QGPRGD 1095
Query: 790 SLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH-TSNLGAPPGPQLHHSNPPPASRQSL 848
T E+ + +G P PG+PG S P GP+ PP S +
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR-----GPPGSAGAP 1150
Query: 849 GQASL-------GPTGELAFSPATGVMGPPSMSGAGEAPEP 882
G+ L GP G + G +GPP G P P
Sbjct: 1151 GKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Score = 36.2 bits (82), Expect = 0.14
Identities = 49/182 (26%), Positives = 62/182 (34%), Gaps = 26/182 (14%)
Query: 725 PGAA-------PFAPLQPPSVPAPSDYPG----QGSSFLGPGTFPESFPPTTPSTPTLAE 773
PGAA P PP P P+ G +G + GP P P P P +
Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET--GPAGRPGEVGPPGPPGPAGEK 934
Query: 774 FTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLD---PTHNPGTPGLH-TSNLG 828
+PG + P + ++ LP Q G P+ PG G S
Sbjct: 935 GSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGER 994
Query: 829 APPGPQLHH--SNPPPASRQSLGQASLGPTGELAFSPA------TGVMGPPSMSGAGEAP 880
PPGP + PP S + + G G A TG GPP GA AP
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP 1054
Query: 881 EP 882
P
Sbjct: 1055 GP 1056
Score = 35.0 bits (79), Expect = 0.32
Identities = 42/149 (28%), Positives = 51/149 (34%), Gaps = 35/149 (23%)
Query: 736 PSVPAPSDYPG-QGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTS 794
P +P PS PG QG S G E PP P LA GPP S + P + +
Sbjct: 973 PGLPGPSGEPGKQGPS----GASGERGPPGPMGPPGLA----GPPGESGREGAPGAEGSP 1024
Query: 795 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 854
+ + P G P PG PG + PGP +G
Sbjct: 1025 GRDGS--PGAKGDRGETGPAGPPGAPGAPGA-----PGP-------------------VG 1058
Query: 855 PTGELAFSPATGVMGPPSMSGAGEAPEPA 883
P G+ TG GP G A PA
Sbjct: 1059 PAGKSGDRGETGPAGPAGPVGPVGARGPA 1087
Score = 33.5 bits (75), Expect = 0.93
Identities = 55/208 (26%), Positives = 66/208 (31%), Gaps = 52/208 (25%)
Query: 727 AAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFP-ESFPPTTPSTP--------TLAEFTPG 777
A P P P P + PGQ +GP P E P P T A PG
Sbjct: 280 AGPAGPKGEPGSPGENGAPGQ----MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335
Query: 778 PPPISYQSDIPSSL-------------LTSEKSTACLPSQMAPAGHLDPTHNPGT---PG 821
P + P ++ + P PAG P NPG PG
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPG 395
Query: 822 LHTSN-----LGA--------PPGPQLHHSNPPPASRQSLGQ----ASLGPTGELAFSPA 864
+N GA P GPQ PP + + G+ S G TG
Sbjct: 396 AKGANGAPGIAGAPGFPGARGPSGPQ--GPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGP 453
Query: 865 TGVMGPPSMSG----AGEAPEPALDLLP 888
GV GPP +G G EP LP
Sbjct: 454 VGVQGPPGPAGEEGKRGARGEPGPTGLP 481
Score = 33.5 bits (75), Expect = 0.93
Identities = 47/162 (29%), Positives = 57/162 (35%), Gaps = 25/162 (15%)
Query: 722 ALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 781
A GP P A QP + A + PG + PG FP + P+ P P PGP
Sbjct: 381 AAGPAGNPGADGQPGAKGA-NGAPGIAGA---PG-FPGARGPSGPQGPG---GPPGPKGN 432
Query: 782 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPP 841
S + P S K + P G P G G + PGP P
Sbjct: 433 SGEPGAPGS-----KGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR--GEPGPT--GLPGP 483
Query: 842 PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 883
P R G G F A GV GP +G +P PA
Sbjct: 484 PGER--------GGPGSRGFPGADGVAGPKGPAGERGSPGPA 517
Score = 31.2 bits (69), Expect = 4.6
Identities = 49/177 (27%), Positives = 56/177 (31%), Gaps = 57/177 (32%)
Query: 201 PRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPL 260
P G P TG+ G G +G G GP A P
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTG------------------------PRGPRGP--AGPP 129
Query: 261 PRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLP-----LQQG 315
R G+ PGQ L G P P PP P P G+ P +
Sbjct: 130 GRDGI--------PGQPGLPG----------PPGPPGPPGP-PGLGGNFAPQLSYGYDEK 170
Query: 316 MTQSLSVPGPTGLHYKPTEQFNGQGA----SFNGGSVSYSQPGLSGP--TRSIPGYP 366
T +SVPGP G P GA F G +PG SGP R PG P
Sbjct: 171 STGGISVPGPMG-PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPP 226
Score = 31.2 bits (69), Expect = 4.6
Identities = 41/157 (26%), Positives = 50/157 (31%), Gaps = 28/157 (17%)
Query: 739 PAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTSEKS 797
P + PG PG+ P T P P + PGPP P + K
Sbjct: 529 PGEAGLPGAKGLTGSPGS-PGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKG 587
Query: 798 TACLPSQMA------PAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQA 851
A P + P G + P G G PPGP PA +
Sbjct: 588 AAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ-----GPPGPA------GPAGERG---- 632
Query: 852 SLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 888
GP G F G GPP GEA +P +P
Sbjct: 633 EQGPAGSPGFQGLPGPAGPP-----GEAGKPGEQGVP 664
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 61.2 bits (147), Expect = 4e-09
Identities = 72/257 (28%), Positives = 90/257 (35%), Gaps = 15/257 (5%)
Query: 145 TQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGP 204
+Q AA+AA A T A A S GA GAG + ++ P P
Sbjct: 31 SQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPP 90
Query: 205 SVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQG 264
PAG G GG P SP P AG P A R P G G P+P
Sbjct: 91 --PAGRARPGGGGPQRPGPPSP--RRPLVPAGPAPPAAKLRPPPEGSAG--SCAPVPAAA 144
Query: 265 VKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPG 324
E P G A A+ P PG P P P PG P G Q+L+ G
Sbjct: 145 AVAAGPEPAPAGPAKPAGP-AALAARAGPGPGPGPGPGPG-PGPGKPAGPGAAQTLN--G 200
Query: 325 PTGL---HYK--PTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMT 379
L H+ P G + + PG T G + P P P+PP
Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA 260
Query: 380 PSSSVPYMSPNQEVKSP 396
P+ + P +P +P
Sbjct: 261 PAPAAPAAAPPPPPPAP 277
Score = 55.5 bits (132), Expect = 2e-07
Identities = 63/237 (26%), Positives = 81/237 (34%), Gaps = 49/237 (20%)
Query: 684 PVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSD 743
P P ++ P+G A C V A + A GP AP P +P A +
Sbjct: 119 PAPPAAKLRPPPEGSA-GSCAPVPAAAAV---------AAGPEPAPAGPAKPAGPAALAA 168
Query: 744 YPGQGSSFLGPGTFPESFP-PTTPSTPTLAEFTPGP-----------PPISYQSDIPSSL 791
G G GPG P P P P+ P A+ G P +S ++ P++L
Sbjct: 169 RAGPGP---GPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAAL 225
Query: 792 LTSEKSTA-------------------CLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPG 832
L K A PS A P P P + L PPG
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG 285
Query: 833 -----PQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPAL 884
P + PPPA+ Q+ G A P A GV G P A AP P +
Sbjct: 286 HPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGV 342
Score = 42.0 bits (97), Expect = 0.003
Identities = 68/277 (24%), Positives = 93/277 (33%), Gaps = 47/277 (16%)
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
P P +P+ + PG G T+ + A A+ G + G + GG G G
Sbjct: 270 PPPPPPAPATLARPPGHPAGPP--TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSG 327
Query: 120 FTTGYAGGPGGLGL---PSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQS 176
GPG P A QAA AA AA+ +TA + V
Sbjct: 328 -----QPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGP----- 377
Query: 177 QELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAG 236
+ GA+ + + P P P G+ G V +P A A
Sbjct: 378 ---TMQGALPSPAAVP--------PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRAT 426
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYL--QGGQ--------YAP 286
+TP RLPQ PPQ P Q ++ PG + + GQ A
Sbjct: 427 LTPTVLAPRLPQ-----PPQ-NPTNIQNF-----QLPPGMVLVRSENGQLLMIPQQALAQ 475
Query: 287 STAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVP 323
AQ P AP P+ P P+Q Q+ P
Sbjct: 476 MQAQAHAQPQTTMAPRPATPTSAPPVQISTVQAPGTP 512
Score = 38.9 bits (89), Expect = 0.022
Identities = 81/346 (23%), Positives = 107/346 (30%), Gaps = 61/346 (17%)
Query: 56 VLGNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYP 115
V G+P G AG+ + G A P G+ GG + P
Sbjct: 63 VSGSPAGAAGAGPAAP----AEGAPGAAPEPPPAGRARPGGGGPQR-------------P 105
Query: 116 GAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQ 175
G P P G P+ RP + + + A AA AA A A +
Sbjct: 106 GPPSPRRPLV--PAGPAPPAAKLRPPPEGSAGSCAPVPAA-AAVAAGPEPAPAGPAKPAG 162
Query: 176 SQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAA 235
L+ G G GP P P G G +G + L + AA
Sbjct: 163 PAALAARAGPGPGP----------GPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAA 212
Query: 236 GMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSP 295
L GP PLP+ T + P G P+ A APSP
Sbjct: 213 PAVSLVNN---------GPAALLPLPKPAAPGTVIQTPP----FVGAAAPPAPA--APSP 257
Query: 296 GQPPAPSPSYPGHRLPLQQGMTQSLSVP------GPTGLHYKPTEQFNGQGASFNGGSVS 349
P AP+P+ P P +L+ P PT P G S G+
Sbjct: 258 --PAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGS--AGAAP 313
Query: 350 YSQPGLSGPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKS 395
P GP G P PG P+ V SP + V++
Sbjct: 314 APAPAAGGPA----GVSGQPGPG--AAAAAPAPGVKAESPKRVVQA 353
Score = 38.5 bits (88), Expect = 0.029
Identities = 46/173 (26%), Positives = 60/173 (34%), Gaps = 16/173 (9%)
Query: 715 SVMEMIAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF 774
S ++ A P A A P S A G + G P + PP P TPT
Sbjct: 346 SPKRVVQAAPPAAQTLAASGPASTAASMVI---GPTMQGALPSPAAVPPPAPGTPTGLPK 402
Query: 775 TPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ 834
S P++ + ++T P+ +AP P NP + N PPG
Sbjct: 403 GAAGAVTQSLSRTPTATTSGIRATLT-PTVLAPRLP-QPPQNP----TNIQNFQLPPGMV 456
Query: 835 LHHSN-------PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAP 880
L S P A Q QA P +A PAT PP +AP
Sbjct: 457 LVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPRPATPTSAPPVQISTVQAP 509
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 61.2 bits (147), Expect = 4e-09
Identities = 106/411 (25%), Positives = 137/411 (33%), Gaps = 84/411 (20%)
Query: 16 HGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPG 75
HG + Y S +SA P +++ G G P A + +GS P
Sbjct: 205 HGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG----------GTPGSGAAAAAGSKPPP- 253
Query: 76 VAGGSSALTSPQCLGQQAF-AEGGANKGYVQQGV----------------YSRGGYPGAP 118
+ +SA +S QQ F A GG G S GY G P
Sbjct: 254 -SSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYP 312
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G Y+GGP G A ++ AAAAAA AAAA+ +Q+
Sbjct: 313 G--GDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGG---------------AQQ 355
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP---SGLSPLAMNPTRAA 235
S + M G S GG P +P G M P G +P + +
Sbjct: 356 RSHHAPMSPGSSGG------GGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPS 409
Query: 236 GMTPLYAGQRLPQ--HGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
G PQ HGYPG P P++ L Q P Q P
Sbjct: 410 G----------PQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGP 459
Query: 294 S----PGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT--EQFNGQGASFNGGS 347
S GQ P + P P QQ S P T H +P+ +Q Q
Sbjct: 460 SGYGQQGQTPYYNQQSPH---PQQQQPPYSQQPPSQTP-HAQPSYQQQPQSQPPQLQSSQ 515
Query: 348 VSYSQPGLSGPTRSIPG-YPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPF 397
YSQ P + P YPS T P S PY P + +SP+
Sbjct: 516 PPYSQQPSQPPHQQSPAPYPSQ----QSTTQQHPQSQPPYSQP--QAQSPY 560
Score = 36.2 bits (82), Expect = 0.14
Identities = 71/290 (24%), Positives = 105/290 (36%), Gaps = 55/290 (18%)
Query: 85 SPQCLGQQAFAEGGANKGYVQQGVYSRGGYP---------------GAPGFTTGYAGGPG 129
+P L QQA A QQ YS+ +P AP T+ GG
Sbjct: 569 APSTLSQQA-AYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSS-KGGQE 626
Query: 130 GLGLPSHAARPST--DFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGA 187
+ L S +RPS+ D + + + A + +T+ +++ Q +QS A
Sbjct: 627 DMNL-SLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNP--------A 677
Query: 188 GQSFNSQFLQH-GGPRGPSV-PAG------------MNPTGIGGVM----GPSGLSPLAM 229
F+ H G RGPS P G ++P + G PSG S M
Sbjct: 678 QSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIM 737
Query: 230 NPTR-----AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
+P+ A + ++PQ+ P P A PRQ Q G Y
Sbjct: 738 HPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALS-PRQPSGGQIHTGMGSYQQNSMGSY 796
Query: 285 APSTAQFAPSPGQPPAPS-PSYPGHRLPLQQGMTQSLSVPGPTG-LHYKP 332
P Q+ P G P P+ + P P GM ++ G G +H +P
Sbjct: 797 GPQGGQYGPQGGYPRQPNYNALPNANYP-SAGMAGGINPMGAGGQMHGQP 845
Score = 35.8 bits (81), Expect = 0.19
Identities = 77/377 (20%), Positives = 112/377 (29%), Gaps = 89/377 (23%)
Query: 90 GQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYA-----GGPGGLGLPSHAARPSTDF 144
G F G YSR PG G GGP P +
Sbjct: 1241 GSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNM 1300
Query: 145 TQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGP 204
+ A + + + + + Q++Q Q+ S+ +QF G P G
Sbjct: 1301 STGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHD--------SYGNQFSTQGTPSGS 1352
Query: 205 SVPAGMNPT----------GIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGY--P 252
P+ + G GP A P GQ PQ P
Sbjct: 1353 PFPSQQTTMYQQQQQNYKRPMDGTYGPP-----AKRHEGEMYSVPYSTGQGQPQQQQLPP 1407
Query: 253 GPPQ-------AQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSY 305
PQ AQP P+Q V Y YP A + + P+ G
Sbjct: 1408 AQPQPASQQQAAQPSPQQDVYNQYGNAYPAT--------ATAATERRPAGG--------- 1450
Query: 306 PGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNG----------QGASFNGG---SVSYSQ 352
P ++ P Q G + + PG P + G QG + G + +Y+
Sbjct: 1451 PQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGGPIQASAEVAQQGTMWQGRNDMTYNYAN 1510
Query: 353 PGLSGPTRSIPGY-------------------PSSPLPGNPTPPMTPSSSVPYMS---PN 390
+G P Y S P G PP PS+ VP M+ P+
Sbjct: 1511 RQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPPPS 1570
Query: 391 QEVKSPFLPDLKPNLNS 407
P + + P ++S
Sbjct: 1571 NYQPPPSMQNHIPQVSS 1587
Score = 35.0 bits (79), Expect = 0.32
Identities = 48/188 (25%), Positives = 66/188 (35%), Gaps = 17/188 (9%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPP-TTPSTPTLAE----FTPGPPPISYQSD 786
P QPP +P+ YP Q S+ P+S PP + P + + P P +S Q+
Sbjct: 522 PSQPPHQQSPAPYPSQQST---TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAA 578
Query: 787 IPSSLLTSEKSTACLPSQMAPAGHLDP----THNPGTPGLHTSNLGAPPGPQLHHSNPPP 842
P + TA + P L + P + TS+ G L + P
Sbjct: 579 YPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSM-TSSKGGQEDMNLSLQSRPS 637
Query: 843 ASRQSLGQASLGPTG-ELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLG 901
+ G P G E A SP G S GE PA T+P L G
Sbjct: 638 SLPDLSGSIDDLPMGTEGALSPGVSTSG--ISSSQGEQSNPAQSPFSPHTSP-HLPGIRG 694
Query: 902 PPDLPTNN 909
P P +
Sbjct: 695 PSPSPVGS 702
Score = 31.2 bits (69), Expect = 4.6
Identities = 38/128 (29%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 777 GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLH 836
GP S+ P+ S APA L GTPG S A G
Sbjct: 197 GPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG-GTPG---SGAAAAAG---- 248
Query: 837 HSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPEL-TNPDE 895
S PPP+S S +S + F G G PS +G G A L +L T+P
Sbjct: 249 -SKPPPSSSASASSSS-SSFAQQRFGAMGG--GGPSAAGGGTPQPTATPTLNQLLTSPSS 304
Query: 896 LLSYLGPP 903
Y G P
Sbjct: 305 ARGYQGYP 312
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 61.2 bits (147), Expect = 4e-09
Identities = 106/411 (25%), Positives = 137/411 (33%), Gaps = 84/411 (20%)
Query: 16 HGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPG 75
HG + Y S +SA P +++ G G P A + +GS P
Sbjct: 205 HGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG----------GTPGSGAAAAAGSKPPP- 253
Query: 76 VAGGSSALTSPQCLGQQAF-AEGGANKGYVQQGV----------------YSRGGYPGAP 118
+ +SA +S QQ F A GG G S GY G P
Sbjct: 254 -SSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYP 312
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G Y+GGP G A ++ AAAAAA AAAA+ +Q+
Sbjct: 313 G--GDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGG---------------AQQ 355
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP---SGLSPLAMNPTRAA 235
S + M G S GG P +P G M P G +P + +
Sbjct: 356 RSHHAPMSPGSSGG------GGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPS 409
Query: 236 GMTPLYAGQRLPQ--HGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
G PQ HGYPG P P++ L Q P Q P
Sbjct: 410 G----------PQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGP 459
Query: 294 S----PGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT--EQFNGQGASFNGGS 347
S GQ P + P P QQ S P T H +P+ +Q Q
Sbjct: 460 SGYGQQGQTPYYNQQSPH---PQQQQPPYSQQPPSQTP-HAQPSYQQQPQSQPPQLQSSQ 515
Query: 348 VSYSQPGLSGPTRSIPG-YPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPF 397
YSQ P + P YPS T P S PY P + +SP+
Sbjct: 516 PPYSQQPSQPPHQQSPAPYPSQ----QSTTQQHPQSQPPYSQP--QAQSPY 560
Score = 36.2 bits (82), Expect = 0.14
Identities = 71/290 (24%), Positives = 105/290 (36%), Gaps = 55/290 (18%)
Query: 85 SPQCLGQQAFAEGGANKGYVQQGVYSRGGYP---------------GAPGFTTGYAGGPG 129
+P L QQA A QQ YS+ +P AP T+ GG
Sbjct: 569 APSTLSQQA-AYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSS-KGGQE 626
Query: 130 GLGLPSHAARPST--DFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGA 187
+ L S +RPS+ D + + + A + +T+ +++ Q +QS A
Sbjct: 627 DMNL-SLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNP--------A 677
Query: 188 GQSFNSQFLQH-GGPRGPSV-PAG------------MNPTGIGGVM----GPSGLSPLAM 229
F+ H G RGPS P G ++P + G PSG S M
Sbjct: 678 QSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIM 737
Query: 230 NPTR-----AAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
+P+ A + ++PQ+ P P A PRQ Q G Y
Sbjct: 738 HPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALS-PRQPSGGQIHTGMGSYQQNSMGSY 796
Query: 285 APSTAQFAPSPGQPPAPS-PSYPGHRLPLQQGMTQSLSVPGPTG-LHYKP 332
P Q+ P G P P+ + P P GM ++ G G +H +P
Sbjct: 797 GPQGGQYGPQGGYPRQPNYNALPNANYP-SAGMAGGINPMGAGGQMHGQP 845
Score = 35.0 bits (79), Expect = 0.32
Identities = 48/188 (25%), Positives = 66/188 (35%), Gaps = 17/188 (9%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPP-TTPSTPTLAE----FTPGPPPISYQSD 786
P QPP +P+ YP Q S+ P+S PP + P + + P P +S Q+
Sbjct: 522 PSQPPHQQSPAPYPSQQST---TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAA 578
Query: 787 IPSSLLTSEKSTACLPSQMAPAGHLDP----THNPGTPGLHTSNLGAPPGPQLHHSNPPP 842
P + TA + P L + P + TS+ G L + P
Sbjct: 579 YPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSM-TSSKGGQEDMNLSLQSRPS 637
Query: 843 ASRQSLGQASLGPTG-ELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLG 901
+ G P G E A SP G S GE PA T+P L G
Sbjct: 638 SLPDLSGSIDDLPMGTEGALSPGVSTSG--ISSSQGEQSNPAQSPFSPHTSP-HLPGIRG 694
Query: 902 PPDLPTNN 909
P P +
Sbjct: 695 PSPSPVGS 702
Score = 31.2 bits (69), Expect = 4.6
Identities = 38/128 (29%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 777 GPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLH 836
GP S+ P+ S APA L GTPG S A G
Sbjct: 197 GPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG-GTPG---SGAAAAAG---- 248
Query: 837 HSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPEL-TNPDE 895
S PPP+S S +S + F G G PS +G G A L +L T+P
Sbjct: 249 -SKPPPSSSASASSSS-SSFAQQRFGAMGG--GGPSAAGGGTPQPTATPTLNQLLTSPSS 304
Query: 896 LLSYLGPP 903
Y G P
Sbjct: 305 ARGYQGYP 312
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 61.2 bits (147), Expect = 4e-09
Identities = 96/397 (24%), Positives = 140/397 (35%), Gaps = 76/397 (19%)
Query: 45 VWGVGNATQSQVLGNPMGPAGS--PSGSSMMP-GVAGGS-SALTSPQCLGQQAFAEGGAN 100
++G+G+ SQ + P GS P G P G+ G + A+ Q QQ + G
Sbjct: 470 LYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQQ 529
Query: 101 --KGYVQQG---VYSRGGYP------------------------GAPGFTTGYAGGPGGL 131
GY QQG YS+ P G+ T + P
Sbjct: 530 GVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTR-SQPPLAP 588
Query: 132 GLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSF 191
G P+H + Q +++ + + T T A L S S
Sbjct: 589 GKPNHE---DLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPA 645
Query: 192 NSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL-YAGQRLPQHG 250
S F H P S+P G +P+ +G SP+ N +R+ ++P G ++P
Sbjct: 646 QSPFSPHASPHLSSIPGGPSPSPVG--------SPVGSNQSRSGPISPASIPGSQMP--- 694
Query: 251 YPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPS---PGQPPAPSPSYPG 307
P PP +Q + S + + ++ G Q P AQ+ P P P PSP
Sbjct: 695 -PQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQM 753
Query: 308 HRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQP-------------- 353
H + S GP Y P ++ A S SYS P
Sbjct: 754 HAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHG 813
Query: 354 -GLSGPTRSIP-------GYPSSPLPGNPTPPMTPSS 382
G S P ++P G + P PGN + MTPSS
Sbjct: 814 QGPSQPCGAVPLGRMPSAGMQNRPFPGNMS-SMTPSS 849
Score = 57.0 bits (136), Expect = 8e-08
Identities = 93/352 (26%), Positives = 115/352 (32%), Gaps = 53/352 (15%)
Query: 58 GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
G GP G PG+ + ++A +P + Q EG N YSR
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
G G G G GG GG G A AAAAA AAAAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
YG AG S Q GG G A ++ G G
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350
Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
PSG +P L T + M Y G P++ P P P Q GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409
Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
Q G QYA ++ +A + + PA SP PG + QG V P
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469
Query: 325 PTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTP 376
G+ P Q Q + + GG SY PG I G + G P
Sbjct: 470 LYGMGSNPHSQ-PQQSSPYPGG--SYGPPGPQRYPIGIQGRTPGAMAGMQYP 518
Score = 52.8 bits (125), Expect = 1e-06
Identities = 91/394 (23%), Positives = 125/394 (31%), Gaps = 74/394 (18%)
Query: 62 GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G SP G MM G GG +A S G A G + + Q + G P
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363
Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
T Y G PS P + AAAA AA A A
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAA---------- 413
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP-------SGLS 225
MG G+ +Q+ P + +P G GP S +
Sbjct: 414 -----------GMGLGKDMGAQYAA-ASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMD 461
Query: 226 PLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQ---GVKRTYSEVYPGQQYLQGG 282
P+ M + GM Q YPG P P++ G++ G QY Q
Sbjct: 462 PMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQ 521
Query: 283 ---QYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQ 339
QY GQ P S LP Q+ +P + Y+P + + +
Sbjct: 522 MPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLP-----PQAQYLPSQSQQRYQPQQDMSQE 576
Query: 340 GASFNG------GSVSY------------SQPGLSGPTRSIPGYPSSPLPGNPTPPMTPS 381
G G ++ S P LSG +P + L + + S
Sbjct: 577 GYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTS 636
Query: 382 SSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGS 415
S +P Q SPF P P+L+S+ PS S
Sbjct: 637 SQGDQSNPAQ---SPFSPHASPHLSSIPGGPSPS 667
Score = 37.0 bits (84), Expect = 0.084
Identities = 75/308 (24%), Positives = 111/308 (36%), Gaps = 59/308 (19%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGV-GNATQSQVLGNPMGPAGSP 67
P++ P P G +QQS + +G+ + +G GN ++ P +G P
Sbjct: 741 PSMSPHPSPGGQMHAGISSFQQSNS--SGTYGPQMSQYGPQGNYSR------PPAYSGVP 792
Query: 68 SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANK-GYVQQGVYSRGGYPG--------AP 118
S S PG G SA + Q GQ GA G + +PG +P
Sbjct: 793 SASYSGPGPGMGISA--NNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSP 850
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G + GGPG +G P P+ + AAAAV AAA + + + + QS
Sbjct: 851 GMSQ--QGGPG-MGPPM----PTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMN--QSGL 901
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMT 238
++ + +S + P P M P + GL+ + M+P +
Sbjct: 902 MASSSPYSQPMNNSSSLMNTQAP-----PYSMAPAMVNSSAASVGLADM-MSPGESKLPL 955
Query: 239 PLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP 298
PL A G + P P K +YS Q P+PG
Sbjct: 956 PLKAD---------GKEEGTPQPESKSKDSYSSQGISQP---------------PTPGNL 991
Query: 299 PAPSPSYP 306
P PSP P
Sbjct: 992 PVPSPMSP 999
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 61.2 bits (147), Expect = 4e-09
Identities = 96/397 (24%), Positives = 140/397 (35%), Gaps = 76/397 (19%)
Query: 45 VWGVGNATQSQVLGNPMGPAGS--PSGSSMMP-GVAGGS-SALTSPQCLGQQAFAEGGAN 100
++G+G+ SQ + P GS P G P G+ G + A+ Q QQ + G
Sbjct: 470 LYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQQ 529
Query: 101 --KGYVQQG---VYSRGGYP------------------------GAPGFTTGYAGGPGGL 131
GY QQG YS+ P G+ T + P
Sbjct: 530 GVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTR-SQPPLAP 588
Query: 132 GLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSF 191
G P+H + Q +++ + + T T A L S S
Sbjct: 589 GKPNHE---DLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPA 645
Query: 192 NSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPL-YAGQRLPQHG 250
S F H P S+P G +P+ +G SP+ N +R+ ++P G ++P
Sbjct: 646 QSPFSPHASPHLSSIPGGPSPSPVG--------SPVGSNQSRSGPISPASIPGSQMP--- 694
Query: 251 YPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPS---PGQPPAPSPSYPG 307
P PP +Q + S + + ++ G Q P AQ+ P P P PSP
Sbjct: 695 -PQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQM 753
Query: 308 HRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQP-------------- 353
H + S GP Y P ++ A S SYS P
Sbjct: 754 HAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHG 813
Query: 354 -GLSGPTRSIP-------GYPSSPLPGNPTPPMTPSS 382
G S P ++P G + P PGN + MTPSS
Sbjct: 814 QGPSQPCGAVPLGRMPSAGMQNRPFPGNMS-SMTPSS 849
Score = 57.0 bits (136), Expect = 8e-08
Identities = 93/352 (26%), Positives = 115/352 (32%), Gaps = 53/352 (15%)
Query: 58 GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
G GP G PG+ + ++A +P + Q EG N YSR
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
G G G G GG GG G A AAAAA AAAAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
YG AG S Q GG G A ++ G G
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350
Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
PSG +P L T + M Y G P++ P P P Q GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409
Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
Q G QYA ++ +A + + PA SP PG + QG V P
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469
Query: 325 PTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTP 376
G+ P Q Q + + GG SY PG I G + G P
Sbjct: 470 LYGMGSNPHSQ-PQQSSPYPGG--SYGPPGPQRYPIGIQGRTPGAMAGMQYP 518
Score = 52.8 bits (125), Expect = 1e-06
Identities = 91/394 (23%), Positives = 125/394 (31%), Gaps = 74/394 (18%)
Query: 62 GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G SP G MM G GG +A S G A G + + Q + G P
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363
Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
T Y G PS P + AAAA AA A A
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAA---------- 413
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP-------SGLS 225
MG G+ +Q+ P + +P G GP S +
Sbjct: 414 -----------GMGLGKDMGAQYAA-ASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMD 461
Query: 226 PLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQ---GVKRTYSEVYPGQQYLQGG 282
P+ M + GM Q YPG P P++ G++ G QY Q
Sbjct: 462 PMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQ 521
Query: 283 ---QYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQ 339
QY GQ P S LP Q+ +P + Y+P + + +
Sbjct: 522 MPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLP-----PQAQYLPSQSQQRYQPQQDMSQE 576
Query: 340 GASFNG------GSVSY------------SQPGLSGPTRSIPGYPSSPLPGNPTPPMTPS 381
G G ++ S P LSG +P + L + + S
Sbjct: 577 GYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTS 636
Query: 382 SSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGS 415
S +P Q SPF P P+L+S+ PS S
Sbjct: 637 SQGDQSNPAQ---SPFSPHASPHLSSIPGGPSPS 667
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 60.8 bits (146), Expect = 5e-09
Identities = 104/385 (27%), Positives = 130/385 (33%), Gaps = 61/385 (15%)
Query: 58 GNPMGPAGSPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYP 115
G P GP G P+G PG +G G SP G+ + GV G P
Sbjct: 60 GTP-GPPG-PAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKP 117
Query: 116 GAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ-EK 174
G G G G G GLP P A +V T EK
Sbjct: 118 GERG-PYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEK 176
Query: 175 QSQEL----SQYGAMG---AGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPL 227
+ + Q G MG G+ GP GPS P G+ G GV G G+
Sbjct: 177 GAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGD 236
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPR--QGVKRTYSEVYPGQQYLQGGQYA 285
P M P+ G PG PQ P R +G+ + + PGQ + G +
Sbjct: 237 RGFP---GEMGPI---------GPPG-PQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGL 283
Query: 286 PSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNG 345
P A PG P P PG + GP GL G GA
Sbjct: 284 PGAPGIAGPPGPPGFGKPGLPGLK-----------GERGPAGLP-------GGPGAKGEQ 325
Query: 346 GSVSY-SQPGLSGP--------TRSIPGYPSSPLPGNPTPPMTPS----SSVPYMSPNQE 392
G +PGL+GP + IPG P P T P P+ + SP +
Sbjct: 326 GPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD 385
Query: 393 VKSPFLPDLKPNLNSLHSSPSGSGP 417
K P P KP L+ +P GP
Sbjct: 386 GK-PGYPG-KPGLDGPKGNPGLPGP 408
Score = 53.5 bits (127), Expect = 9e-07
Identities = 106/380 (27%), Positives = 127/380 (33%), Gaps = 84/380 (22%)
Query: 26 VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP-----------MGPAGSPSGSSMMP 74
+P Q T P+G GVG ++ V G P MGP G P G P
Sbjct: 204 LPGPQGPTGPSGPP-------GVGKRGENGVPGQPGIKGDRGFPGEMGPIGPP-GPQGPP 255
Query: 75 GVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGLP 134
G G P+ +G+ GA Q G+ G PGAPG GP G G P
Sbjct: 256 GERG-------PEGIGKP-----GAAGAPGQPGIPGTKGLPGAPGIAG--PPGPPGFGKP 301
Query: 135 SHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQ 194
P + A A A + G G S
Sbjct: 302 G---LPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGS---- 354
Query: 195 FLQHG--GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYP 252
HG GP+G + PAG P G G G G SP + G L + P G P
Sbjct: 355 ---HGLPGPKGETGPAG--PAGYPGAKGERG-SPGSDGKPGYPGKPGLDGPKGNP--GLP 406
Query: 253 GP--------PQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPS 304
GP P P P V ++ PG G+ P A P P P P
Sbjct: 407 GPKGDPGVGGPPGLPGP---VGPAGAKGMPGHN----GEAGPRGAPGIPGTRGPIGP-PG 458
Query: 305 YPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPG 364
PG P +G S PGP G+ K NG + PG GP R G
Sbjct: 459 IPG--FPGSKGDPGSPGPPGPAGIATK----------GLNGPT---GPPGPPGP-RGHSG 502
Query: 365 YPSSPLPGNPTPPMTPSSSV 384
P LPG P PP P +V
Sbjct: 503 EPG--LPGPPGPPGPPGQAV 520
Score = 53.1 bits (126), Expect = 1e-06
Identities = 112/444 (25%), Positives = 142/444 (31%), Gaps = 71/444 (15%)
Query: 12 PPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVW-----------GVGNATQSQVLGNP 60
PP P G +P + P G V G+ V G P
Sbjct: 99 PPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKP 158
Query: 61 --MGPAGSPS-----GSSMMPGVAG-----GSSALTSPQCLGQQAF-AEGGANKGYVQQG 107
GP G+P G PGV G G +P G++ G G
Sbjct: 159 GQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPG 218
Query: 108 VYSRG--GYPGAPGFT--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATAT 163
V RG G PG PG G+ G G +G P P + A A
Sbjct: 219 VGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIP 278
Query: 164 ATATVAALQEKQSQELSQYGAMG-AGQSFNSQFLQHGGP--RGPSVPAGMNPTGIG--GV 218
T + GA G AG F + G P +G PAG+ P G G G
Sbjct: 279 GTKGLP-------------GAPGIAGPPGPPGFGKPGLPGLKGERGPAGL-PGGPGAKGE 324
Query: 219 MGPSGLSPLAMNPTRAAGMTPLYAGQRLP-QHGYPGPP-QAQPLPRQGVKRTYSEVYPGQ 276
GP+GL P T G + +P HG PGP + P G YPG
Sbjct: 325 QGPAGL-PGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAG--------YPGA 375
Query: 277 QYLQGGQYAPSTAQFAPSPG-QPPAPSPSYPGHRLPLQQGMTQSLSVP-GPTGLHYKPTE 334
+ +G + + PG P +P PG + G L P GP G P
Sbjct: 376 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMP-- 433
Query: 335 QFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSP-LPGNPTPPMTPSSSVPYMSPNQEV 393
NG + PG+ G TR G P P PG+ P +P P + +
Sbjct: 434 -------GHNGEAGPRGAPGIPG-TRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGL 485
Query: 394 KSPFLPDLKPNLNSLHSSPSGSGP 417
P P P P GP
Sbjct: 486 NGPTGPPGPPGPRGHSGEPGLPGP 509
Score = 49.7 bits (117), Expect = 1e-05
Identities = 99/397 (24%), Positives = 128/397 (32%), Gaps = 59/397 (14%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVG-----NATQSQVLGNP 60
P P P P G G VP Q G + + G + +G P
Sbjct: 207 PQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKP 266
Query: 61 MGPAGSPSGSSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAP 118
G AG+P G +PG G G+ + P G F + G ++G G PGA
Sbjct: 267 -GAAGAP-GQPGIPGTKGLPGAPGIAGPP--GPPGFGKPGLPGLKGERGPAGLPGGPGAK 322
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G AG PG GL + + T A
Sbjct: 323 G-EQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPA----------- 370
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLS--------PLAMN 230
GA G S S G P P P P G G+ GP G P +
Sbjct: 371 -GYPGAKGERGSPGSD----GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVG 425
Query: 231 PTRAAGMTPLYAGQRLPQHGYPGPPQAQ-PLPRQGVKRTYSEVYPGQQYLQGGQYAPSTA 289
P A GM P + G+ P+ G PG P + P+ G+ +PG + G P A
Sbjct: 426 PAGAKGM-PGHNGEAGPR-GAPGIPGTRGPIGPPGIPG-----FPGSKGDPGSPGPPGPA 478
Query: 290 QFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVS 349
A P P PG R G + +PGP G P + +G G S
Sbjct: 479 GIATKGLNGPTGPPGPPGPR-----GHSGEPGLPGPPGPPGPPGQAVMPEGFIKAGQRPS 533
Query: 350 YSQPGLSGPTRSIPGYPSS----------PLPGNPTP 376
S L + + G P S P G P P
Sbjct: 534 LSGTPLVSANQGVTGMPVSAFTVILSKAYPAIGTPIP 570
Score = 47.0 bits (110), Expect = 8e-05
Identities = 57/187 (30%), Positives = 66/187 (35%), Gaps = 25/187 (13%)
Query: 735 PPSVPAPSDYPGQ-GSSFLG-PGTFPESFPPTTPSTPTLAEFT-----PGPPPISYQSDI 787
P P P PG+ G +G PG P P T L PGPP + +
Sbjct: 245 PIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFG-KPGL 303
Query: 788 PSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGL--HTSNLG--APPGPQLHHSNPPPA 843
P L E+ A LP G P PG PGL N+G P G H P P
Sbjct: 304 PG--LKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGP- 360
Query: 844 SRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGEAPEPALD---LLPELTNPDELLSY 899
+ GP G + A G G P G G +P LD P L P
Sbjct: 361 ------KGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGV 414
Query: 900 LGPPDLP 906
GPP LP
Sbjct: 415 GGPPGLP 421
Score = 37.0 bits (84), Expect = 0.084
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 795 EKSTACLPSQMAPAGHLDPTHNPGTPGLHT------SNLGAPPGPQLHHSNPPPASRQSL 848
E+ T P P GH P+ PG PG + L PPGP P
Sbjct: 58 EQGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKP 117
Query: 849 GQ-ASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 883
G+ GP G++ + G GPP G P PA
Sbjct: 118 GERGPYGPKGDVGPAGLPGPRGPPGPPG---IPGPA 150
Score = 34.7 bits (78), Expect = 0.42
Identities = 45/190 (23%), Positives = 62/190 (32%), Gaps = 24/190 (12%)
Query: 729 PFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAE----FTPGPP----P 780
P P P P PS PG+ + PG E P P + + PG P P
Sbjct: 64 PPGPAGPRGHPGPSGPPGK-PGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGP 122
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAG--------HLDPTHNPGTPGLHTSNLGAPPG 832
+ D+ + L + P PAG PT PG G GAP
Sbjct: 123 YGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGF-PGEKGAPGV 181
Query: 833 PQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTN 892
P ++ + +G + G GE G GP G G+ E + P +
Sbjct: 182 PGMN------GQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKG 235
Query: 893 PDELLSYLGP 902
+GP
Sbjct: 236 DRGFPGEMGP 245
Score = 33.1 bits (74), Expect = 1.2
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 818 GTPGLHTSNLGAPPGPQLHHSNPPPASRQSL-GQASLGPTGELAFSPATGVMGPPSMSGA 876
GTPG PPGP +P P+ G S G GE G+ GPP S
Sbjct: 60 GTPG--------PPGPAGPRGHPGPSGPPGKPGYGSPGLQGE------PGLPGPPGPSAV 105
Query: 877 GEAPEPALDLLPELTNPDELLSYLGPPDLP 906
G+ P L P P +GP LP
Sbjct: 106 GKPGVPGLPGKPGERGPYGPKGDVGPAGLP 135
Score = 30.4 bits (67), Expect = 7.9
Identities = 44/149 (29%), Positives = 49/149 (32%), Gaps = 36/149 (24%)
Query: 735 PPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGP--PPISYQSDIPSSLL 792
PP +P P G PG E+ P P P T GP PP IP
Sbjct: 417 PPGLPGPVGPAGAKGM---PGHNGEAGPRGAPGIPG----TRGPIGPP-----GIPG--- 461
Query: 793 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQAS 852
P G P PG G+ T L P GP PP R G+
Sbjct: 462 --------FPGSKGDPGSPGP---PGPAGIATKGLNGPTGPP-----GPPGPRGHSGEPG 505
Query: 853 L-GPTGELAFSPATGVMGPPSMSGAGEAP 880
L GP G P VM P AG+ P
Sbjct: 506 LPGPPGPPG-PPGQAVM-PEGFIKAGQRP 532
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 60.8 bits (146), Expect = 5e-09
Identities = 94/344 (27%), Positives = 115/344 (33%), Gaps = 55/344 (15%)
Query: 62 GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GPAGSP G G+ G P C +G + G G PG PG
Sbjct: 608 GPAGSPGPPGPVGPAGIKGAKGEPCEP-CPALSNLQDGDV-RVVALPGPSGEKGEPGPPG 665
Query: 120 F----------------TTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATAT 163
F G AG PG G P RP A T
Sbjct: 666 FGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCT 725
Query: 164 ATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSG 223
A ++ + Q G G GP G P G+ GV GP G
Sbjct: 726 ACPSLQGTVTDMAGRPGQPGPKG-----------EQGPEGVGRPGKPGQPGLPGVQGPPG 774
Query: 224 LSPLAMNPTRAAGMTPLYAGQRLPQ--HGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQG 281
L + P P G + PQ G PG P Q LP G + PG +G
Sbjct: 775 LKGVQGEP------GPPGRGVQGPQGEPGAPGLPGIQGLP--GPRGP-----PGPTGEKG 821
Query: 282 GQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGA 341
Q +P + A P PP S S P R QQG T PG G + E G+ +
Sbjct: 822 AQGSPG-VKGATGPVGPPGASVSGPPGR-DGQQGQTGLRGTPGEKGPRGEKGEP--GECS 877
Query: 342 SFNGGSVSYS----QPGLSGPTRSIPGYPSSP-LPGNPTPPMTP 380
+ G + +S PGL + PG P +PG P PP P
Sbjct: 878 CPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPPGVP 921
Score = 52.4 bits (124), Expect = 2e-06
Identities = 106/391 (27%), Positives = 129/391 (32%), Gaps = 48/391 (12%)
Query: 12 PPAPHG-------DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPA 64
PP P G DG + P + PAG ++ G T L P G
Sbjct: 1202 PPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPP-GFKGKTGHPGLPGPKGDC 1260
Query: 65 GSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT- 121
G P GS+ PG G A+ G G S G G G T
Sbjct: 1261 GKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATG 1320
Query: 122 -TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAA---TATATATATVAALQEKQSQ 177
G AG PG G P H P T AA AA Q+ Q+
Sbjct: 1321 ERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAG 1380
Query: 178 ELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGM 237
E + G G S GP GP PAG G G GPSG L P M
Sbjct: 1381 EKGRAGMPGGPGKSGSM-----GPVGPPGPAG--ERGHPGAPGPSGSPGLPGVPGSMGDM 1433
Query: 238 TPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQ 297
+R + + + T +P + G+ P A PG+
Sbjct: 1434 VNYDEIKRFIRQEI-----IKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGA--PGR 1486
Query: 298 PPAP-SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFN-GQG-ASFNG--------G 346
P AP SP PG Q G +PG GL E+ + G G A NG G
Sbjct: 1487 PGAPGSPGLPG-----QIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQG 1541
Query: 347 SVSYSQPGLSGP--TRSIPGYPSSPLP-GNP 374
Y + G +GP + IPG P P P G P
Sbjct: 1542 PPGYGKMGATGPMGQQGIPGIPGPPGPMGQP 1572
Score = 49.3 bits (116), Expect = 2e-05
Identities = 116/471 (24%), Positives = 143/471 (30%), Gaps = 99/471 (21%)
Query: 15 PHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG-SPSGSSMM 73
P G + +P + P G + GV AT P+GP G S SG
Sbjct: 796 PGAPGLPGIQGLPGPRGPPGPTGEKGAQGSP-GVKGAT------GPVGPPGASVSGPPGR 848
Query: 74 PGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGL 133
G G + +P G + QG G PGAPG G + PG G
Sbjct: 849 DGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGP 908
Query: 134 PSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNS 193
P P TA + +L +Q S G GQ +
Sbjct: 909 PGIPGPPGPPGVPGLQGVP-GNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHP 967
Query: 194 QFLQHGGPRG----PSVPA--------------------GMNPTGIGGVMGPSGL-SPLA 228
+L G +G P VP G N G G +G GL P
Sbjct: 968 GYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGSPGLPGPPG 1027
Query: 229 MNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPST 288
+ R P G R G PGPP P+ G PG LQG +
Sbjct: 1028 LPGQRGEEGPP---GMR----GSPGPPG--PIGPPGFPGAVGS--PGLPGLQGERGLTGL 1076
Query: 289 AQFAPSPGQPPAPSPSYPGHRLPL-------------------QQGMTQSLSVPGPTGLH 329
PG P P YPG P + G S +PGP G
Sbjct: 1077 TGDKGEPGPPG--QPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPG-P 1133
Query: 330 YKPTEQFNGQGASFNGGSVSYS-QPGLSGPTRSIPGYPS--------------------- 367
P + QG S G + QPG GP PG+P
Sbjct: 1134 AGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGP-PGFPGKVGSPGPPGPQAEKGSEGIRG 1192
Query: 368 -SPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGP 417
S LPG+P PP P P + K D KP L P +GP
Sbjct: 1193 PSGLPGSPGPPGPPGIQGPAGLDGLDGK-----DGKP---GLRGDPGPAGP 1235
Score = 49.3 bits (116), Expect = 2e-05
Identities = 91/392 (23%), Positives = 117/392 (29%), Gaps = 57/392 (14%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWG--VGNATQSQVLGNPMGP 63
P P P P G +P Q T GSL + + G+ Q Q
Sbjct: 912 PGPPGPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLV 971
Query: 64 AGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT-- 121
G +PGV G + L + E + G G PG PG
Sbjct: 972 EKGEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQ 1031
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
G G PG G P P AV + +K
Sbjct: 1032 RGEEGPPGMRGSPG----PPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKG------ 1081
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLY 241
+ G P P P P G+ G+ G G T +AG
Sbjct: 1082 ---------------EPGPPGQPGYPGATGPPGLPGIKGERGY-------TGSAG----E 1115
Query: 242 AGQRLP--QHGYPGPP-QAQPLPRQGVKRTYSEV----YPGQQYLQGGQYAPSTAQFAPS 294
G+ P G PGPP A P +G + E + GQ G P S
Sbjct: 1116 KGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGS 1175
Query: 295 PGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKP-TEQFNGQGA--SFNGGSVSYS 351
PG PP P + G+ S PGP G+ + +G+ G
Sbjct: 1176 PG-PPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAG 1234
Query: 352 QPGLSGPT--RSIPGYPSSPLP----GNPTPP 377
PGL GP + G+P P P G P PP
Sbjct: 1235 PPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPP 1266
Score = 48.1 bits (113), Expect = 4e-05
Identities = 51/183 (27%), Positives = 67/183 (36%), Gaps = 23/183 (12%)
Query: 739 PAPSDYPGQGSSFLGPGTFPESFPPTTPST--PTLAEFTPGPPPISYQSDIPSSLLTSEK 796
P P G+ + PG P P P PGP IS T E+
Sbjct: 1263 PGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGER 1322
Query: 797 STACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP----PPASRQSLGQAS 852
A LP Q P GH P PGT G + PPG Q + P P + GQA
Sbjct: 1323 GLAGLPGQPGPPGHPGPPGEPGTDG--AAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAG 1380
Query: 853 ----LGPTGELAFSPATGVMGPPSMSG-------AGEAPEPALDLLP----ELTNPDELL 897
G G S + G +GPP +G G + P L +P ++ N DE+
Sbjct: 1381 EKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIK 1440
Query: 898 SYL 900
++
Sbjct: 1441 RFI 1443
Score = 47.4 bits (111), Expect = 6e-05
Identities = 93/384 (24%), Positives = 129/384 (33%), Gaps = 64/384 (16%)
Query: 58 GNPMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQA--------FAEGGANKGYVQQGVY 109
G P GP G GSS +PG G P G++ EG N +V G+
Sbjct: 470 GGPPGPKGD-KGSSGIPGKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQN--FV--GLP 524
Query: 110 SRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVA 169
+ G G PG G PG G+ P + ++ V A ++ A+ V
Sbjct: 525 GKPGPKGEPGDPVPARGDPGIQGIKGEKGEPC-----LSCSSVVGAQHLVSSTGASGDVG 579
Query: 170 ALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP-----SGL 224
+ + G G + F + G P P + P GI G G L
Sbjct: 580 SPGFGLPGLPGRAGVPGL-KGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPAL 638
Query: 225 SPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQY 284
S L R + P +G++ G PGPP PG+Q G +
Sbjct: 639 SNLQDGDVRVVAL-PGPSGEK----GEPGPP--------------GFGLPGKQGKAGERG 679
Query: 285 APSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGA--S 342
A +PG P P + + G++ V GP G E+ +G A S
Sbjct: 680 LKGQKGDAGNPGDPGTPGTTG-------RPGLSGEPGVQGPAG---PKGEKGDGCTACPS 729
Query: 343 FNGGSVSYS-QPGLSGPTR-------SIPGYPSSP-LPGNPTPPMTPSSSVPYMSPNQEV 393
G + +PG GP PG P P LPG PP P + V
Sbjct: 730 LQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGV 789
Query: 394 KSPFLPDLKPNLNSLHSSPSGSGP 417
+ P P L + P GP
Sbjct: 790 QGPQGEPGAPGLPGIQGLPGPRGP 813
Score = 46.6 bits (109), Expect = 1e-04
Identities = 100/396 (25%), Positives = 129/396 (32%), Gaps = 68/396 (17%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P P P P G + ++ T AG G S+ L P GPAG
Sbjct: 1083 PGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEK-------GEPGPPGSEGLPGPPGPAG 1135
Query: 66 -----SPSGSSM---------MPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSR 111
P G+S PG G P +G A KG +G+
Sbjct: 1136 PRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKG--SEGIRGP 1193
Query: 112 GGYPGAPGFTTGYAG--GPGGL-GLPSHAARPSTDFTQAAAAAAVAAAAATATATATATV 168
G PG+PG G G GP GL GL +P A
Sbjct: 1194 SGLPGSPG-PPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPG 1252
Query: 169 AALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRG-PSVPAGMNPTGIGGVMGPSGLSPL 227
+ + G+ G + GP+G P P + P G G GP+G+S +
Sbjct: 1253 LPGPKGDCGKPGPPGSTGRPGAEGEPGAM--GPQGRPGPPGHVGPPGPPGQPGPAGISAV 1310
Query: 228 AMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPS 287
+ R A AG LP G PGPP P + PG G + P
Sbjct: 1311 GLKGDRGATGERGLAG--LP--GQPGPPGHPGPPGE----------PGTDGAAGKEGPPG 1356
Query: 288 TAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGS 347
F PG P P G + Q G +PG G G S + G
Sbjct: 1357 KQGFYGPPG--PKGDPGAAGQK--GQAGEKGRAGMPG-------------GPGKSGSMGP 1399
Query: 348 VSYSQPGLSGPTRSIPGYPSSPLP-GNPTPPMTPSS 382
V PG +G G+P +P P G+P P P S
Sbjct: 1400 V--GPPGPAGER----GHPGAPGPSGSPGLPGVPGS 1429
Score = 43.1 bits (100), Expect = 0.001
Identities = 54/192 (28%), Positives = 70/192 (36%), Gaps = 26/192 (13%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTL--AEFTPGPPPISYQSDIPSSLLT 793
P +P P PGQ PG PP P A +PG P + + + LT
Sbjct: 1020 PGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTG--LT 1077
Query: 794 SEKSTACLPSQMAPAGHLDPTHNPGTPGL-----HTSNLG-----APPGPQLHHSNPPPA 843
+K P Q G+ T PG PG+ +T + G PPG + P PA
Sbjct: 1078 GDKGEPGPPGQ---PGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPA 1134
Query: 844 S-RQSLG-QASLGPTGELAFSPATGVMGP------PSMSGAGEAPEPALDLLPE-LTNPD 894
R G Q + G G+ F G GP P G+ P P + E + P
Sbjct: 1135 GPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPS 1194
Query: 895 ELLSYLGPPDLP 906
L GPP P
Sbjct: 1195 GLPGSPGPPGPP 1206
Score = 41.6 bits (96), Expect = 0.003
Identities = 52/209 (24%), Positives = 67/209 (32%), Gaps = 46/209 (22%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESF------PPTTPSTPTLAEFTPGPPPISYQSDIPS 789
P P P +PG+ S PG E P P +P PGPP I + +
Sbjct: 1161 PGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPG----PPGPPGIQGPAGLDG 1216
Query: 790 -------SLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP------------ 830
L + A P M P G T +PG PG + G P
Sbjct: 1217 LDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPG-PKGDCGKPGPPGSTGRPGAE 1275
Query: 831 -----------PGPQLHHSNP-PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG--- 875
PGP H P PP G +++G G+ + G+ G P G
Sbjct: 1276 GEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPG 1335
Query: 876 -AGEAPEPALDLLPELTNPDELLSYLGPP 903
G EP D P + GPP
Sbjct: 1336 HPGPPGEPGTDGAAGKEGPPGKQGFYGPP 1364
Score = 39.7 bits (91), Expect = 0.013
Identities = 66/280 (23%), Positives = 88/280 (31%), Gaps = 43/280 (15%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP----- 60
P P P P DG+ E P +Q P G G A + G P
Sbjct: 1334 PGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGK 1393
Query: 61 ---MGPAG--------------SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGY 103
MGP G PSGS +PGV G + + + + F K +
Sbjct: 1394 SGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEI--KRFIRQEIIKMF 1451
Query: 104 VQQGVY--SRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATAT 161
++ Y SR +P G G PG G P P + +
Sbjct: 1452 DERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAP--------GSPGLPGQIGREG 1503
Query: 162 ATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
V L + ++ G +G G + + GP GP P G G G MG
Sbjct: 1504 RQGLPGVRGLPGTKGEK----GDIGIGIAGENGL---PGPPGPQGPPGYGKMGATGPMGQ 1556
Query: 222 SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP 261
G+ P P G P AG P + P Q P
Sbjct: 1557 QGI-PGIPGPPGPMGQ-PGKAGHCNPSDCFGAMPMEQQYP 1594
Score = 32.3 bits (72), Expect = 2.1
Identities = 52/208 (25%), Positives = 68/208 (32%), Gaps = 33/208 (15%)
Query: 708 PAHVLMPSVMEMIAALGPGAAPF--------APLQPPSVPAPSDYPGQGSSFLGPGTFPE 759
P PS ++I + PGA P PP +P P PG PG
Sbjct: 873 PGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQGVPGN--N 930
Query: 760 SFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGT 819
P T L G PI Q + S + P + G PG
Sbjct: 931 GLPGQPGLTAEL-----GSLPIE-QHLLKSICGDCVQGQRAHPGYLVEKGEKGDQGIPGV 984
Query: 820 PGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-AGE 878
PGL Q S P + ++ G S G G + + G+ GPP + G GE
Sbjct: 985 PGLDNC-------AQCFLSLERPRAEEARGDNSEGDPGCVG---SPGLPGPPGLPGQRGE 1034
Query: 879 APEPALDLLPELTNPDELLSYLGPPDLP 906
P + P P +GPP P
Sbjct: 1035 EGPPGMRGSPGPPGP------IGPPGFP 1056
Score = 31.6 bits (70), Expect = 3.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 813 PTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPS 872
P PG PGL + PGP+ PP + + Q S G G ATG +GPP
Sbjct: 792 PQGEPGAPGL--PGIQGLPGPR----GPPGPTGEKGAQGSPGVKG------ATGPVGPPG 839
Query: 873 MSGAG 877
S +G
Sbjct: 840 ASVSG 844
Score = 31.2 bits (69), Expect = 4.6
Identities = 51/197 (25%), Positives = 66/197 (33%), Gaps = 49/197 (24%)
Query: 200 GPRGPSVPAG-MNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQ 258
GP+G G + P G+ G GP GL P G LP G PG P
Sbjct: 429 GPKGQKGDPGFVGPEGLAGEPGPPGL--------------PGPPGIGLP--GTPGDPGGP 472
Query: 259 PLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQ 318
P P+ G K S PG+ +G P G P P+ P +G
Sbjct: 473 PGPK-GDKG--SSGIPGK---EGPGGKPGKPGVKGEKGDPCEVCPTLP-------EGFQN 519
Query: 319 SLSVPGPTGLHYKPTEQFNGQG------------------ASFNGGSVSYSQPGLSGPTR 360
+ +PG G +P + +G +S G S G SG
Sbjct: 520 FVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVG 579
Query: 361 SIPGYPSSPLPGNPTPP 377
S PG+ LPG P
Sbjct: 580 S-PGFGLPGLPGRAGVP 595
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 60.1 bits (144), Expect = 9e-09
Identities = 64/244 (26%), Positives = 89/244 (36%), Gaps = 39/244 (15%)
Query: 165 TATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGL 224
T T A L S S S F H P S+P G +P+ +G
Sbjct: 632 TGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVG-------- 683
Query: 225 SPLAMNPTRAAGMTPL-YAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQ 283
SP+ N +R+ ++P G ++P P PP +Q + S + + ++ G Q
Sbjct: 684 SPVGSNQSRSGPISPASIPGSQMP----PQPPGSQSESSSHPALSQSPMPQERGFMAGTQ 739
Query: 284 YAPSTAQFAPS---PGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQG 340
P AQ+ P P P PSP H + S GP Y P ++
Sbjct: 740 RNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPP 799
Query: 341 ASFNGGSVSYSQP---------------GLSGPTRSIP-------GYPSSPLPGNPTPPM 378
A S SYS P G S P ++P G + P PGN + M
Sbjct: 800 AYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMS-SM 858
Query: 379 TPSS 382
TPSS
Sbjct: 859 TPSS 862
Score = 57.8 bits (138), Expect = 5e-08
Identities = 94/362 (25%), Positives = 117/362 (32%), Gaps = 53/362 (14%)
Query: 58 GNPMGPAGSPSGSSMMPGV----AGGSSALTSPQCLGQ-QAFAEGGANKGYVQQGVYSRG 112
G GP G PG+ + ++A +P + Q EG N YSR
Sbjct: 187 GGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRP 246
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
G G G G GG GG G A AAAAA AAAAA
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG--------- 297
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPR----GPSVPAGMNPTGIGGVMG-------- 220
YG AG S Q GG G A ++ G G
Sbjct: 298 -------GGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQ 350
Query: 221 ---PSGLSP-LAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQ 276
PSG +P L T + M Y G P++ P P P Q GQ
Sbjct: 351 NQHPSGATPTLNQLLTSPSPMMRSYGGS-YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQ 409
Query: 277 QYL--------QGGQYAPSTAQFAPSPGQP-PAPSPSYPGHRLPLQQGMTQSLSV---PG 324
Q G QYA ++ +A + + PA SP PG + QG V P
Sbjct: 410 QAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ 469
Query: 325 PTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTPSSSV 384
G+ P Q Q + + GG SY PG I G + G P S
Sbjct: 470 LYGMGSNPHSQ-PQQSSPYPGG--SYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQDSGDA 526
Query: 385 PY 386
+
Sbjct: 527 TW 528
Score = 50.4 bits (119), Expect = 7e-06
Identities = 99/396 (25%), Positives = 136/396 (34%), Gaps = 65/396 (16%)
Query: 62 GPAGSP--SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G SP G MM G GG +A S G A G + + Q + G P
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAA----GGFQRFAGQNQHPSGATPTLNQ 363
Query: 120 FTTG-------YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQ 172
T Y G PS A P Q+ AAAA AAA A A + +
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPS-APPPPPSQPQSQAAAAGAAAGGQQAA---AGMGLGK 419
Query: 173 EKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPT 232
+ +Q + A A Q + + G P GP++ VM L + NP
Sbjct: 420 DMGAQYAAASPAWAAAQQRSHPAMSPGTP-GPTMGRSQGSPMDPMVMKRPQLYGMGSNPH 478
Query: 233 RAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEV----YPGQQ----------- 277
+ Y G +G PGP Q P+ QG RT + YP QQ
Sbjct: 479 SQPQQSSPYPGG---SYGPPGP-QRYPIGIQG--RTPGAMAGMQYPQQQDSGDATWKETF 532
Query: 278 YLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFN 337
+L QY GQ P S LP Q+ +P + Y+P + +
Sbjct: 533 WLMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLP-----PQAQYLPSQSQQRYQPQQDMS 587
Query: 338 GQGASFNG------GSVSY------------SQPGLSGPTRSIPGYPSSPLPGNPTPPMT 379
+G G ++ S P LSG +P + L + +
Sbjct: 588 QEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGS 647
Query: 380 PSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGS 415
SS +P Q SPF P P+L+S+ PS S
Sbjct: 648 TSSQGDQSNPAQ---SPFSPHASPHLSSIPGGPSPS 680
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 59.7 bits (143), Expect = 1e-08
Identities = 110/430 (25%), Positives = 143/430 (33%), Gaps = 83/430 (19%)
Query: 12 PPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVW-----GVGNATQSQVLGNPMGPAGS 66
PP P G+G P Q AG+ +V G + +Q L P G G+
Sbjct: 670 PPGPPGEGG-----KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT 724
Query: 67 P--------SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGA 117
P SG + PG G P G A ++G V ++G G G
Sbjct: 725 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 784
Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G T G G PG G ++ + A +A A T A
Sbjct: 785 RGLT-GPIGPPGPAG--ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA 841
Query: 178 ELSQYGAMGA-GQSFNSQFLQHGGPRGPS-VPAGMNPTGIGGVMGPSGLSPLAMNPTRAA 235
+ Q GA G G++ GP+GPS P PTG+ G G G A P A
Sbjct: 842 D-GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARG----AQGPPGAT 896
Query: 236 GMTPLYAGQRLP--QHGYPGPPQAQ-PLPRQGVKRTYSEVYP----GQQYLQGGQYAPST 288
G P AG+ P +G PGPP P + G K + P G+ LQG P
Sbjct: 897 GF-PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE 955
Query: 289 ----AQFAPSPGQPPAPSPSYPGHR----LPLQQGMTQSLSVPGPTGLHYKPTEQFNGQG 340
PS + P G R LP Q+G +PGP+G +P +Q
Sbjct: 956 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSG---EPGKQGAPGA 1012
Query: 341 ASFNGGSVSYSQPGLSGPTRS-----------------------------------IPGY 365
+ G PGL+GP PG
Sbjct: 1013 SGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGP 1072
Query: 366 PSSPLPGNPT 375
P SP P PT
Sbjct: 1073 PGSPGPAGPT 1082
Score = 55.1 bits (131), Expect = 3e-07
Identities = 104/426 (24%), Positives = 132/426 (30%), Gaps = 103/426 (24%)
Query: 4 MNPMKPALPPAPHG-DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
M PM P PP P G G ++ P + +G PMG
Sbjct: 203 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG----------------------PMG 240
Query: 63 PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQ----GVYSRGGYPGAP 118
P G P PG G P G++ +G+ GV GYPG
Sbjct: 241 PRGPPGP----PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD 296
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G AG PG G + P + + T A A A + Q
Sbjct: 297 G-AKGEAGAPGVKG---ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 352
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGL--------SPLAMN 230
G +G GGP P P G G GP G +P +
Sbjct: 353 AGPPGPVGPA----------GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 402
Query: 231 PTRAAGM--------------TPLYAGQRLPQHGYPGP-----PQAQPLPRQGVKRTYSE 271
P A+G P AG G+PGP PQ P +T
Sbjct: 403 PAGASGNPGTDGIPGAKGSAGAPGIAG----APGFPGPRGPPGPQGATGPLGPKGQTGEP 458
Query: 272 VYPGQQYLQG--GQYAPSTAQFAPSP----------GQPPAPSP-------SYPGHR-LP 311
G + QG G+ P+ Q AP P G+P P PG+R P
Sbjct: 459 GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 518
Query: 312 LQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLP 371
Q G+ PG G P+ +GA NG +PGL G R + G P P
Sbjct: 519 GQDGLAGPKGAPGERG----PSGLAGPKGA--NGDPGRPGEPGLPG-ARGLTGRPGDAGP 571
Query: 372 GNPTPP 377
P
Sbjct: 572 QGKVGP 577
Score = 52.8 bits (125), Expect = 1e-06
Identities = 109/399 (27%), Positives = 135/399 (33%), Gaps = 74/399 (18%)
Query: 13 PAPHGD-GSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLG--NPMGPAGSPSG 69
P +G G +P ++ T PAG+ GN Q G P+GPAG P G
Sbjct: 314 PGENGSPGPMGPRGLPGERGRTGPAGAAGAR------GNDGQPGPAGPPGPVGPAGGP-G 366
Query: 70 SSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGG 127
PG G G + P+ Q E G G G G PG G AG
Sbjct: 367 FPGAPGAKGEAGPTGARGPEG-AQGPRGEPGTPGSPGPAGASGNPGTDGIPG-AKGSAGA 424
Query: 128 PGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE-----LSQY 182
PG G P Q A T +A + +Q +
Sbjct: 425 PGIAGAPGFPGPRGPPGPQGATGPL-----GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Query: 183 GAMG-AGQSFNSQFLQHGGPRGPSVPAGMNPT-------GIGGVMGPSGLSPLAMNPTRA 234
GA G AG+ G GP P G G G+ GP G +P P+
Sbjct: 480 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG-APGERGPSGL 538
Query: 235 AGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
AG P A + G PG P A+ L R G +V P + G+ P Q A
Sbjct: 539 AG--PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR 596
Query: 294 SPGQP-----PAPS--------------PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPT 333
GQP P P P PG R LP + G T + PGP G P
Sbjct: 597 --GQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAG----PA 650
Query: 334 EQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPG 372
+ QGA PG SG + +PG P P G
Sbjct: 651 GERGEQGA-----------PGPSG-FQGLPGPPGPPGEG 677
Score = 47.4 bits (111), Expect = 6e-05
Identities = 116/447 (25%), Positives = 139/447 (31%), Gaps = 111/447 (24%)
Query: 12 PPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWG---------VGNATQSQVLG--NP 60
PP P G S P ++ T P G G A Q G P
Sbjct: 808 PPGPAG--SAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 865
Query: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
GP+G+P G GV G A + G F G G G PG PG
Sbjct: 866 QGPSGAP-GPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG--PPGSNGNPGPPGPPGP 922
Query: 121 T--------------TGYAGGPG---GLGLPSHAARPSTDFTQAAAAAAVAAAAATATAT 163
+ G AG PG G P P D + A A
Sbjct: 923 SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDD----GPSGAEGPPGPQGLAG 978
Query: 164 ATATVAALQEK----------QSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPT 213
V ++ S E + GA GA G RGP P G P
Sbjct: 979 QRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS-----------GDRGPPGPVG--PP 1025
Query: 214 GIGGVMGPSGL--SPLAMNPTRAAGMTPLYAGQ----RLPQHGYPGPP----QAQPLPRQ 263
G+ G G G SP A P G + + + G PGPP A P +Q
Sbjct: 1026 GLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1085
Query: 264 GVKRTYSEVYPGQQYLQG--GQYAPSTAQFAPSPGQPPAPS--PSYPGHR-LPLQQGMTQ 318
G + G+ QG G P+ A+ P P PG R L +G T
Sbjct: 1086 GDR--------GEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1137
Query: 319 SLSVPGPTGLHYKPTEQFNGQGASFNGG-SVSYSQPGLSGPT-----RSIPGY------- 365
+PGP G QGAS G S PG GP+ IPG
Sbjct: 1138 LQGLPGPPG-------PSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR 1190
Query: 366 -------PSSPLPGNPTPPMTPSSSVP 385
P+ P PGNP PP P P
Sbjct: 1191 GRSGETGPAGP-PGNPGPPGPPGPPGP 1216
Score = 46.6 bits (109), Expect = 1e-04
Identities = 86/323 (26%), Positives = 102/323 (31%), Gaps = 63/323 (19%)
Query: 57 LGNPMGPAGS--------PSGSSMMPG---VAGGSSALTSPQCLGQQAFAEGGANKGYV- 104
L P GP G PSG+ PG +AG + P G++ F G
Sbjct: 946 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG 1005
Query: 105 QQGVYSRGGYPGAPGFT-----TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
+QG G G PG TG AG PG G P P D AA
Sbjct: 1006 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRD------GAAGVKGDRG 1059
Query: 160 ATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVM 219
T A A G G +Q GP GPS PAG GI G
Sbjct: 1060 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ-----GPMGPSGPAGAR--GIQGPQ 1112
Query: 220 GPSGLSPLAMNPTRAA-----GMTPLYAGQRLPQHGYPGP--------------PQAQPL 260
GP G A P G T L Q LP G PGP P+ P
Sbjct: 1113 GPRGDKGEAGEPGERGLKGHRGFTGL---QGLP--GPPGPSGDQGASGPAGPSGPRGPPG 1167
Query: 261 P-----RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQG 315
P + G + P + G+ P+ P P PP P PG + +
Sbjct: 1168 PVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP----PGPGIDMSAF 1223
Query: 316 MTQSLSVPGPTGLHYKPTEQFNG 338
GP L Y +Q G
Sbjct: 1224 AGLGPREKGPDPLQYMRADQAAG 1246
Score = 38.1 bits (87), Expect = 0.038
Identities = 51/174 (29%), Positives = 63/174 (36%), Gaps = 13/174 (7%)
Query: 200 GPRGPSVPAG-MNPTGIGGVMGPSGLSPLAMNPTRAAGM--TPLYAGQRLPQHGYPGPPQ 256
GP GP PAG P G G G G A P G TP G P G PGPP
Sbjct: 120 GPPGPQGPAGEQGPRGDRGDKGEKG----APGPRGRDGEPGTPGNPGPPGPP-GPPGPPG 174
Query: 257 AQPLPRQGVKRTYSEVYPGQQY-LQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQG 315
+ + E G Q + G P + P P P P P + G
Sbjct: 175 LGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG 234
Query: 316 MTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSP 369
++ + GP G KP + +G+ A G + PG G R PG P P
Sbjct: 235 VSGPMGPRGPPGPPGKPGD--DGE-AGKPGKAGERGPPGPQG-ARGFPGTPGLP 284
Score = 35.8 bits (81), Expect = 0.19
Identities = 48/195 (24%), Positives = 62/195 (31%), Gaps = 29/195 (14%)
Query: 721 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780
A LG P P+ P P P+ PG F G P + P P PG P
Sbjct: 194 AQLGVMQGPMGPMGPRGPPGPAGAPGP-QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 252
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
++ P + P G PGTPGL PG + H P
Sbjct: 253 DDGEAGKPGK-----------AGERGPPGPQGARGFPGTPGL--------PGVKGHRGYP 293
Query: 841 --PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-------AGEAPEPALDLLPELT 891
A ++ G +G + + G MGP + G AG A D P
Sbjct: 294 GLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA 353
Query: 892 NPDELLSYLGPPDLP 906
P + G P P
Sbjct: 354 GPPGPVGPAGGPGFP 368
Score = 35.4 bits (80), Expect = 0.25
Identities = 46/185 (24%), Positives = 55/185 (29%), Gaps = 46/185 (24%)
Query: 726 GAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQS 785
G P P P +PGQ GP P P+ + P A PG P +
Sbjct: 499 GVGPIGPPGERGAPGNRGFPGQ-DGLAGPKGAPGERGPSGLAGPKGANGDPGRPG---EP 554
Query: 786 DIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASR 845
+P + + P P G + P+ PG G PPGPQ P
Sbjct: 555 GLPGA-----RGLTGRPGDAGPQGKVGPSGAPGEDGRP-----GPPGPQGARGQP----- 599
Query: 846 QSLGQASLGPTGELAFSPATGVMGPPSMSG-------AGEAPEPALDLLPELTNPDELLS 898
GVMG P G AGE P L L D
Sbjct: 600 --------------------GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG 639
Query: 899 YLGPP 903
GPP
Sbjct: 640 AAGPP 644
Score = 35.4 bits (80), Expect = 0.25
Identities = 42/156 (26%), Positives = 51/156 (32%), Gaps = 34/156 (21%)
Query: 735 PPSVPAPSDYPG----QGSS----------FLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780
PP P PS G +G S GP P P+ AE PGP
Sbjct: 916 PPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 975
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
++ Q I L ++ P P+G PG G PPGP P
Sbjct: 976 LAGQRGIVG--LPGQRGERGFPGLPGPSGEPGKQGAPGASGDR-----GPPGPV----GP 1024
Query: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA 876
P + GP GE + G GPP GA
Sbjct: 1025 PGLT---------GPAGEPGREGSPGADGPPGRDGA 1051
Score = 34.7 bits (78), Expect = 0.42
Identities = 47/168 (27%), Positives = 56/168 (33%), Gaps = 25/168 (14%)
Query: 724 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISY 783
G AP AP PP P P+ G+ G + P PS P A GP
Sbjct: 1062 GAVGAPGAP-GPPGSPGPAGPTGKQGDRGEAG----AQGPMGPSGPAGARGIQGPQGPR- 1115
Query: 784 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH--TSNLGA--PPGPQLHHSN 839
+K A P + GH T G PG + + GA P GP
Sbjct: 1116 ----------GDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGP 1165
Query: 840 PPPASRQSLGQAS-----LGPTGELAFSPATGVMGPPSMSGAGEAPEP 882
P P A+ +GP G S TG GPP G P P
Sbjct: 1166 PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP 1213
Score = 34.3 bits (77), Expect = 0.55
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 807 PAGHLDPTHNPGTPGL--------HTSNLGAPPGPQLHHSNPPPASRQSL-----GQASL 853
PAG P G PG + GAP GPQ P P + + +
Sbjct: 832 PAGFAGPPGADGQPGAKGEQGEAGQKGDAGAP-GPQGPSGAPGPQGPTGVTGPKGARGAQ 890
Query: 854 GPTGELAFSPATGVMGPPSMSGAGEAPEP 882
GP G F A G +GPP +G P P
Sbjct: 891 GPPGATGFPGAAGRVGPPGSNGNPGPPGP 919
Score = 33.9 bits (76), Expect = 0.71
Identities = 44/158 (27%), Positives = 52/158 (32%), Gaps = 30/158 (18%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFP-----PTTPSTPTLAEFTPGPPPISYQSD 786
P PP P+ PG + PG E+ P P P TPG P + S
Sbjct: 352 PAGPPGPVGPAGGPGFPGA---PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASG 408
Query: 787 IPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQ 846
P T +P AG PG PG PPGPQ +
Sbjct: 409 NPG--------TDGIPGAKGSAGAPGIAGAPGFPGPR-----GPPGPQ--------GATG 447
Query: 847 SLG-QASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 883
LG + G G F G G P +G AP PA
Sbjct: 448 PLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA 485
Score = 32.7 bits (73), Expect = 1.6
Identities = 50/189 (26%), Positives = 56/189 (29%), Gaps = 39/189 (20%)
Query: 735 PPSVPAPSDYPGQGSSFLG--PGTFPES------------FPPTTPSTPTLAEFTPGPPP 780
PP P P PG G +F G F E P P P PGP
Sbjct: 163 PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQG 222
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
P P P G P PG PG PG P
Sbjct: 223 FQGNPGEPGE-----------PGVSGPMGPRGPPGPPGKPG--DDGEAGKPGKAGERGPP 269
Query: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALDLLPELTNPDELLS- 898
P Q + G G G G P + GA GEA P + E +P E S
Sbjct: 270 GP-------QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK--GESGSPGENGSP 320
Query: 899 -YLGPPDLP 906
+GP LP
Sbjct: 321 GPMGPRGLP 329
Score = 31.6 bits (70), Expect = 3.5
Identities = 55/184 (29%), Positives = 71/184 (38%), Gaps = 29/184 (15%)
Query: 200 GPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQ----RLPQHGYPGPP 255
GP GP P G P G+GG + + +A AG L Q + G PGP
Sbjct: 162 GPPGPPGPPG--PPGLGG----NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 215
Query: 256 QAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPS-PGQP----PAPSPSYPGHRL 310
A P P QG + E PG+ + G P + P PG+P A P G R
Sbjct: 216 GA-PGP-QGFQGNPGE--PGEPGVSG----PMGPRGPPGPPGKPGDDGEAGKPGKAGERG 267
Query: 311 PLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPL 370
P G + PG GL P + + +G PG+ G + S PG SP
Sbjct: 268 P--PGPQGARGFPGTPGL---PGVKGHRGYPGLDGAKGEAGAPGVKGESGS-PGENGSPG 321
Query: 371 PGNP 374
P P
Sbjct: 322 PMGP 325
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 59.7 bits (143), Expect = 1e-08
Identities = 110/430 (25%), Positives = 143/430 (33%), Gaps = 83/430 (19%)
Query: 12 PPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVW-----GVGNATQSQVLGNPMGPAGS 66
PP P G+G P Q AG+ +V G + +Q L P G G+
Sbjct: 601 PPGPPGEGG-----KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT 655
Query: 67 P--------SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYV-QQGVYSRGGYPGA 117
P SG + PG G P G A ++G V ++G G G
Sbjct: 656 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 715
Query: 118 PGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQ 177
G T G G PG G ++ + A +A A T A
Sbjct: 716 RGLT-GPIGPPGPAG--ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA 772
Query: 178 ELSQYGAMGA-GQSFNSQFLQHGGPRGPS-VPAGMNPTGIGGVMGPSGLSPLAMNPTRAA 235
+ Q GA G G++ GP+GPS P PTG+ G G G A P A
Sbjct: 773 D-GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARG----AQGPPGAT 827
Query: 236 GMTPLYAGQRLP--QHGYPGPPQAQ-PLPRQGVKRTYSEVYP----GQQYLQGGQYAPST 288
G P AG+ P +G PGPP P + G K + P G+ LQG P
Sbjct: 828 GF-PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE 886
Query: 289 ----AQFAPSPGQPPAPSPSYPGHR----LPLQQGMTQSLSVPGPTGLHYKPTEQFNGQG 340
PS + P G R LP Q+G +PGP+G +P +Q
Sbjct: 887 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSG---EPGKQGAPGA 943
Query: 341 ASFNGGSVSYSQPGLSGPTRS-----------------------------------IPGY 365
+ G PGL+GP PG
Sbjct: 944 SGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGP 1003
Query: 366 PSSPLPGNPT 375
P SP P PT
Sbjct: 1004 PGSPGPAGPT 1013
Score = 55.1 bits (131), Expect = 3e-07
Identities = 104/426 (24%), Positives = 132/426 (30%), Gaps = 103/426 (24%)
Query: 4 MNPMKPALPPAPHG-DGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
M PM P PP P G G ++ P + +G PMG
Sbjct: 134 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG----------------------PMG 171
Query: 63 PAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQ----GVYSRGGYPGAP 118
P G P PG G P G++ +G+ GV GYPG
Sbjct: 172 PRGPPGP----PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD 227
Query: 119 GFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G AG PG G + P + + T A A A + Q
Sbjct: 228 G-AKGEAGAPGVKG---ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 283
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGL--------SPLAMN 230
G +G GGP P P G G GP G +P +
Sbjct: 284 AGPPGPVGPA----------GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 333
Query: 231 PTRAAGM--------------TPLYAGQRLPQHGYPGP-----PQAQPLPRQGVKRTYSE 271
P A+G P AG G+PGP PQ P +T
Sbjct: 334 PAGASGNPGTDGIPGAKGSAGAPGIAG----APGFPGPRGPPGPQGATGPLGPKGQTGEP 389
Query: 272 VYPGQQYLQG--GQYAPSTAQFAPSP----------GQPPAPSP-------SYPGHR-LP 311
G + QG G+ P+ Q AP P G+P P PG+R P
Sbjct: 390 GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 449
Query: 312 LQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLP 371
Q G+ PG G P+ +GA NG +PGL G R + G P P
Sbjct: 450 GQDGLAGPKGAPGERG----PSGLAGPKGA--NGDPGRPGEPGLPG-ARGLTGRPGDAGP 502
Query: 372 GNPTPP 377
P
Sbjct: 503 QGKVGP 508
Score = 52.8 bits (125), Expect = 1e-06
Identities = 109/399 (27%), Positives = 135/399 (33%), Gaps = 74/399 (18%)
Query: 13 PAPHGD-GSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLG--NPMGPAGSPSG 69
P +G G +P ++ T PAG+ GN Q G P+GPAG P G
Sbjct: 245 PGENGSPGPMGPRGLPGERGRTGPAGAAGAR------GNDGQPGPAGPPGPVGPAGGP-G 297
Query: 70 SSMMPGVAG--GSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGG 127
PG G G + P+ Q E G G G G PG G AG
Sbjct: 298 FPGAPGAKGEAGPTGARGPEG-AQGPRGEPGTPGSPGPAGASGNPGTDGIPG-AKGSAGA 355
Query: 128 PGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE-----LSQY 182
PG G P Q A T +A + +Q +
Sbjct: 356 PGIAGAPGFPGPRGPPGPQGATGPL-----GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410
Query: 183 GAMG-AGQSFNSQFLQHGGPRGPSVPAGMNPT-------GIGGVMGPSGLSPLAMNPTRA 234
GA G AG+ G GP P G G G+ GP G +P P+
Sbjct: 411 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG-APGERGPSGL 469
Query: 235 AGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP 293
AG P A + G PG P A+ L R G +V P + G+ P Q A
Sbjct: 470 AG--PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR 527
Query: 294 SPGQP-----PAPS--------------PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPT 333
GQP P P P PG R LP + G T + PGP G P
Sbjct: 528 --GQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAG----PA 581
Query: 334 EQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPG 372
+ QGA PG SG + +PG P P G
Sbjct: 582 GERGEQGA-----------PGPSG-FQGLPGPPGPPGEG 608
Score = 47.4 bits (111), Expect = 6e-05
Identities = 116/447 (25%), Positives = 139/447 (31%), Gaps = 111/447 (24%)
Query: 12 PPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWG---------VGNATQSQVLG--NP 60
PP P G S P ++ T P G G A Q G P
Sbjct: 739 PPGPAG--SAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 796
Query: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
GP+G+P G GV G A + G F G G G PG PG
Sbjct: 797 QGPSGAP-GPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG--PPGSNGNPGPPGPPGP 853
Query: 121 T--------------TGYAGGPG---GLGLPSHAARPSTDFTQAAAAAAVAAAAATATAT 163
+ G AG PG G P P D + A A
Sbjct: 854 SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDD----GPSGAEGPPGPQGLAG 909
Query: 164 ATATVAALQEK----------QSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPT 213
V ++ S E + GA GA G RGP P G P
Sbjct: 910 QRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS-----------GDRGPPGPVG--PP 956
Query: 214 GIGGVMGPSGL--SPLAMNPTRAAGMTPLYAGQ----RLPQHGYPGPP----QAQPLPRQ 263
G+ G G G SP A P G + + + G PGPP A P +Q
Sbjct: 957 GLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1016
Query: 264 GVKRTYSEVYPGQQYLQG--GQYAPSTAQFAPSPGQPPAPS--PSYPGHR-LPLQQGMTQ 318
G + G+ QG G P+ A+ P P PG R L +G T
Sbjct: 1017 GDR--------GEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1068
Query: 319 SLSVPGPTGLHYKPTEQFNGQGASFNGG-SVSYSQPGLSGPT-----RSIPGY------- 365
+PGP G QGAS G S PG GP+ IPG
Sbjct: 1069 LQGLPGPPG-------PSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR 1121
Query: 366 -------PSSPLPGNPTPPMTPSSSVP 385
P+ P PGNP PP P P
Sbjct: 1122 GRSGETGPAGP-PGNPGPPGPPGPPGP 1147
Score = 46.6 bits (109), Expect = 1e-04
Identities = 86/323 (26%), Positives = 102/323 (31%), Gaps = 63/323 (19%)
Query: 57 LGNPMGPAGS--------PSGSSMMPG---VAGGSSALTSPQCLGQQAFAEGGANKGYV- 104
L P GP G PSG+ PG +AG + P G++ F G
Sbjct: 877 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG 936
Query: 105 QQGVYSRGGYPGAPGFT-----TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAAT 159
+QG G G PG TG AG PG G P P D AA
Sbjct: 937 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRD------GAAGVKGDRG 990
Query: 160 ATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVM 219
T A A G G +Q GP GPS PAG GI G
Sbjct: 991 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ-----GPMGPSGPAGAR--GIQGPQ 1043
Query: 220 GPSGLSPLAMNPTRAA-----GMTPLYAGQRLPQHGYPGP--------------PQAQPL 260
GP G A P G T L Q LP G PGP P+ P
Sbjct: 1044 GPRGDKGEAGEPGERGLKGHRGFTGL---QGLP--GPPGPSGDQGASGPAGPSGPRGPPG 1098
Query: 261 P-----RQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQG 315
P + G + P + G+ P+ P P PP P PG + +
Sbjct: 1099 PVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP----PGPGIDMSAF 1154
Query: 316 MTQSLSVPGPTGLHYKPTEQFNG 338
GP L Y +Q G
Sbjct: 1155 AGLGPREKGPDPLQYMRADQAAG 1177
Score = 42.0 bits (97), Expect = 0.003
Identities = 61/211 (28%), Positives = 79/211 (37%), Gaps = 15/211 (7%)
Query: 165 TATVAALQEKQSQELSQYGAMGA-GQSFN-SQFLQHGGPRGPSVPAG-MNPTGIGGVMGP 221
T VAA+ Q Q++ Q G G G+ + + GP GP PAG P G G G
Sbjct: 14 TLLVAAVLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGE 73
Query: 222 SGLSPLAMNPTRAAGM--TPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQY- 278
G A P G TP G P G PGPP + + E G Q
Sbjct: 74 KG----APGPRGRDGEPGTPGNPGPPGPP-GPPGPPGLGGNFAAQMAGGFDEKAGGAQLG 128
Query: 279 LQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNG 338
+ G P + P P P P P + G++ + GP G KP + +G
Sbjct: 129 VMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGD--DG 186
Query: 339 QGASFNGGSVSYSQPGLSGPTRSIPGYPSSP 369
+ A G + PG G R PG P P
Sbjct: 187 E-AGKPGKAGERGPPGPQG-ARGFPGTPGLP 215
Score = 35.8 bits (81), Expect = 0.19
Identities = 48/195 (24%), Positives = 62/195 (31%), Gaps = 29/195 (14%)
Query: 721 AALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780
A LG P P+ P P P+ PG F G P + P P PG P
Sbjct: 125 AQLGVMQGPMGPMGPRGPPGPAGAPGP-QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 183
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
++ P + P G PGTPGL PG + H P
Sbjct: 184 DDGEAGKPGK-----------AGERGPPGPQGARGFPGTPGL--------PGVKGHRGYP 224
Query: 841 --PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSG-------AGEAPEPALDLLPELT 891
A ++ G +G + + G MGP + G AG A D P
Sbjct: 225 GLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA 284
Query: 892 NPDELLSYLGPPDLP 906
P + G P P
Sbjct: 285 GPPGPVGPAGGPGFP 299
Score = 35.4 bits (80), Expect = 0.25
Identities = 46/185 (24%), Positives = 55/185 (29%), Gaps = 46/185 (24%)
Query: 726 GAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQS 785
G P P P +PGQ GP P P+ + P A PG P +
Sbjct: 430 GVGPIGPPGERGAPGNRGFPGQ-DGLAGPKGAPGERGPSGLAGPKGANGDPGRPG---EP 485
Query: 786 DIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASR 845
+P + + P P G + P+ PG G PPGPQ P
Sbjct: 486 GLPGA-----RGLTGRPGDAGPQGKVGPSGAPGEDGRP-----GPPGPQGARGQP----- 530
Query: 846 QSLGQASLGPTGELAFSPATGVMGPPSMSG-------AGEAPEPALDLLPELTNPDELLS 898
GVMG P G AGE P L L D
Sbjct: 531 --------------------GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG 570
Query: 899 YLGPP 903
GPP
Sbjct: 571 AAGPP 575
Score = 35.4 bits (80), Expect = 0.25
Identities = 42/156 (26%), Positives = 51/156 (32%), Gaps = 34/156 (21%)
Query: 735 PPSVPAPSDYPG----QGSS----------FLGPGTFPESFPPTTPSTPTLAEFTPGPPP 780
PP P PS G +G S GP P P+ AE PGP
Sbjct: 847 PPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 906
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
++ Q I L ++ P P+G PG G PPGP P
Sbjct: 907 LAGQRGIVG--LPGQRGERGFPGLPGPSGEPGKQGAPGASGDR-----GPPGPV----GP 955
Query: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA 876
P + GP GE + G GPP GA
Sbjct: 956 PGLT---------GPAGEPGREGSPGADGPPGRDGA 982
Score = 34.7 bits (78), Expect = 0.42
Identities = 47/168 (27%), Positives = 56/168 (33%), Gaps = 25/168 (14%)
Query: 724 GPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISY 783
G AP AP PP P P+ G+ G + P PS P A GP
Sbjct: 993 GAVGAPGAP-GPPGSPGPAGPTGKQGDRGEAG----AQGPMGPSGPAGARGIQGPQGPR- 1046
Query: 784 QSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLH--TSNLGA--PPGPQLHHSN 839
+K A P + GH T G PG + + GA P GP
Sbjct: 1047 ----------GDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGP 1096
Query: 840 PPPASRQSLGQAS-----LGPTGELAFSPATGVMGPPSMSGAGEAPEP 882
P P A+ +GP G S TG GPP G P P
Sbjct: 1097 PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP 1144
Score = 34.3 bits (77), Expect = 0.55
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 807 PAGHLDPTHNPGTPGL--------HTSNLGAPPGPQLHHSNPPPASRQSL-----GQASL 853
PAG P G PG + GAP GPQ P P + + +
Sbjct: 763 PAGFAGPPGADGQPGAKGEQGEAGQKGDAGAP-GPQGPSGAPGPQGPTGVTGPKGARGAQ 821
Query: 854 GPTGELAFSPATGVMGPPSMSGAGEAPEP 882
GP G F A G +GPP +G P P
Sbjct: 822 GPPGATGFPGAAGRVGPPGSNGNPGPPGP 850
Score = 33.9 bits (76), Expect = 0.71
Identities = 44/158 (27%), Positives = 52/158 (32%), Gaps = 30/158 (18%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFP-----PTTPSTPTLAEFTPGPPPISYQSD 786
P PP P+ PG + PG E+ P P P TPG P + S
Sbjct: 283 PAGPPGPVGPAGGPGFPGA---PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASG 339
Query: 787 IPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQ 846
P T +P AG PG PG PPGPQ +
Sbjct: 340 NPG--------TDGIPGAKGSAGAPGIAGAPGFPGPR-----GPPGPQ--------GATG 378
Query: 847 SLG-QASLGPTGELAFSPATGVMGPPSMSGAGEAPEPA 883
LG + G G F G G P +G AP PA
Sbjct: 379 PLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA 416
Score = 32.7 bits (73), Expect = 1.6
Identities = 50/189 (26%), Positives = 56/189 (29%), Gaps = 39/189 (20%)
Query: 735 PPSVPAPSDYPGQGSSFLG--PGTFPES------------FPPTTPSTPTLAEFTPGPPP 780
PP P P PG G +F G F E P P P PGP
Sbjct: 94 PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQG 153
Query: 781 ISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNP 840
P P P G P PG PG PG P
Sbjct: 154 FQGNPGEPGE-----------PGVSGPMGPRGPPGPPGKPG--DDGEAGKPGKAGERGPP 200
Query: 841 PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALDLLPELTNPDELLS- 898
P Q + G G G G P + GA GEA P + E +P E S
Sbjct: 201 GP-------QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK--GESGSPGENGSP 251
Query: 899 -YLGPPDLP 906
+GP LP
Sbjct: 252 GPMGPRGLP 260
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 59.7 bits (143), Expect = 1e-08
Identities = 108/424 (25%), Positives = 130/424 (30%), Gaps = 121/424 (28%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P K LP P G + Q T P G VV G G+P GP G
Sbjct: 811 PGKDGLPGHPGQRGEVGF------QGKTGPPGPPGVVGPQGAAGETGPMGERGHP-GPPG 863
Query: 66 SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT--TG 123
P G +PG AG ++G G PGAPG G
Sbjct: 864 PP-GEQGLPGTAG--------------------------KEGTKGDPGPPGAPGKDGPAG 896
Query: 124 YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYG 183
G PG GLP A P + + A + + G
Sbjct: 897 LRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP---------------------GERG 935
Query: 184 AMGAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTR 233
A G+G GP+GP AG + PTG GV GP GL P P
Sbjct: 936 AAGSGGPIGPP--GRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL-PGPAGPPG 992
Query: 234 AAGMT--------PLYAGQR--LPQHGYPGPP-QAQPLPRQGVKRTYSEVYPGQQYLQG- 281
AG P G + +HG PGPP P+ + G E PG + QG
Sbjct: 993 VAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGE--PGARGPQGH 1050
Query: 282 -------------GQYAPSTAQFAPSPGQP--------PAPSPSYPGHRLPL-------Q 313
G P Q P P P P PG R P
Sbjct: 1051 FGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGP 1110
Query: 314 QGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGN 373
QG + GP G +P E +G +PG+ GP S PG
Sbjct: 1111 QGPPGGVGNLGPPGEKGEPGE---------SGSPGIQGEPGVKGPRGERGEKGESGQPGE 1161
Query: 374 PTPP 377
P PP
Sbjct: 1162 PGPP 1165
Score = 47.4 bits (111), Expect = 6e-05
Identities = 109/435 (25%), Positives = 143/435 (32%), Gaps = 60/435 (13%)
Query: 8 KPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVV-----TTVWGVGNATQSQVLGN 59
KP LP P DG + E P + P+G + V GV +
Sbjct: 591 KPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKG 650
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G G P + GV G + P G+ EG +G G PG PG
Sbjct: 651 EKGEDGFPGFKGDI-GVKGDRGEVGVPGSRGEDG-PEG-------PKGRTGPTGDPGPPG 701
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
G G G GLP + R + A+ A + + + +
Sbjct: 702 LM-GEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPR 760
Query: 180 SQYGAMGAGQSFNSQFLQHG-GPRGP----SVPAGMNPTGIGGVMGPSGLSPLAMNPTRA 234
Q G GA ++ G GP GP +P P G G GP G P
Sbjct: 761 GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG-------PPGK 813
Query: 235 AGMTPLYAGQR-----LPQHGYPGPP-QAQPLPRQGVKRTYSE-VYPGQQYLQGGQYAPS 287
G+ P + GQR + G PGPP P G E +PG G Q P
Sbjct: 814 DGL-PGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 872
Query: 288 TA---QFAPSPGQPPAPSPSYPG--HRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGAS 342
TA PG P AP P P ++G+ + PG G +G S
Sbjct: 873 TAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG----------NEGPS 922
Query: 343 FNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLK 402
G PG G S G P P PG P P P ++ P + K P P +
Sbjct: 923 GPPGPA--GSPGERGAAGS--GGPIGP-PGRPGPQGPPGAAGEKGVPGE--KGPIGPTGR 975
Query: 403 PNLNSLHSSPSGSGP 417
+ P +GP
Sbjct: 976 DGVQGPVGLPGPAGP 990
Score = 45.4 bits (106), Expect = 2e-04
Identities = 73/255 (28%), Positives = 89/255 (34%), Gaps = 46/255 (18%)
Query: 60 PMGPAGS--PSGSSMMPGVAGGSSALTSPQCLGQQAFA-----EGGANKGYVQ--QGVYS 110
P GP G P+GS G GG A P +G G A K +G+
Sbjct: 1227 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1286
Query: 111 RGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAA 170
G G PG TG AG PG +G P A A
Sbjct: 1287 SVGQQGRPG-ATGQAGPPGPVGPPGLPGLRGD-------AGAKGEKGHPGLIGLIGPPGE 1338
Query: 171 LQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGM----NPTGIGGVMGPSGLS 225
EK + L G G+ GQ GP GP P G+ P G G GP G
Sbjct: 1339 QGEKGDRGLP--GPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGG-- 1394
Query: 226 PLAMNPTRAAGMTPLYAGQRLPQHGYPGPP--QAQPLPRQGVKRTYSEVYPGQQYLQGGQ 283
P G+ Q P G+PGPP QPLP Q K+T V G + +Q +
Sbjct: 1395 -----PKGEKGV------QGPP--GHPGPPGEVIQPLPIQMPKKTRRSV-DGSRLMQEDE 1440
Query: 284 YAPSTAQFAPSPGQP 298
P+ +PG P
Sbjct: 1441 AIPT----GGAPGSP 1451
Score = 42.0 bits (97), Expect = 0.003
Identities = 59/234 (25%), Positives = 81/234 (34%), Gaps = 41/234 (17%)
Query: 714 PSVME--MIAALGPGA-APFAPLQPPSV---PAPSDYPGQGSSFLGPGTFPESFPPTTPS 767
P+V+E M+ PG P + PP + P P PG+ G P P
Sbjct: 302 PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPG 361
Query: 768 TPTLAEFT-------PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTP 820
T + F GP + ++ + L + + P M G P PG+P
Sbjct: 362 TSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSP 421
Query: 821 GL--HTSNLG--APPGPQLHHSNPPPASRQSLGQAS-----------------------L 853
GL + +LG P GPQ P A R+ A
Sbjct: 422 GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP 481
Query: 854 GPTGELAFSPATGVMGPPSMSG-AGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
G G + A G+ GPP G G+ E LP + P LL GPP +P
Sbjct: 482 GEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 535
Score = 40.8 bits (94), Expect = 0.006
Identities = 86/320 (26%), Positives = 104/320 (32%), Gaps = 74/320 (23%)
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATAT-ATVAAL 171
G PG G G G PG G P A P +D ++ + V A
Sbjct: 325 GPPGIQG-NPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAA 383
Query: 172 QEKQSQELSQY---------GAMG-------AGQSFNSQFLQHGGPRGPSVPAGMNPTGI 215
QE Q+Q + Q G MG GQ + G GP P G P G+
Sbjct: 384 QEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRG--PQGL 441
Query: 216 GGVMGPSGLSPLAMNPTRAAGMT--PLYAGQR-------LP-QHGYPGPPQAQPLPRQGV 265
G G +G A A GM P G R LP + G+ G AQ LP
Sbjct: 442 TGPPGKAGRRGRA-GADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP-- 498
Query: 266 KRTYSEVYPGQQYLQG--GQYAPSTAQFAPSP-------GQPPAPSPSYPGHR-LPLQQG 315
PG+ +G G+ P P G P P P PG R + QG
Sbjct: 499 --------PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGP--PGVRGMDGPQG 548
Query: 316 MTQSLSV---PGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPG 372
SL PGP G P Q GL GP +I + G
Sbjct: 549 PKGSLGPQGEPGPPGQQGTPGTQ------------------GLPGPQGAIGPHGEKGPQG 590
Query: 373 NPTPPMTPSSSVPYMSPNQE 392
P P P S P P +E
Sbjct: 591 KPGLPGMPGSDGPPGHPGKE 610
Score = 40.0 bits (92), Expect = 0.010
Identities = 87/331 (26%), Positives = 101/331 (30%), Gaps = 75/331 (22%)
Query: 62 GPAGSPSGSSMM--PGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G + PG G SP G+ +G ++G + G PG PG
Sbjct: 1109 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERG--EKGESGQPGEPGPPG 1166
Query: 120 -----FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEK 174
G G PG +G P P
Sbjct: 1167 PKGPTGDDGPKGNPGPVGFPGDPGPPG--------------------------------- 1193
Query: 175 QSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP--- 231
+ Q GA G G P P PTG G GP G A +P
Sbjct: 1194 EGGPRGQDGAKG----------DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1243
Query: 232 TRAAGMTPLYAGQRLPQHGYPGP-----PQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAP 286
R G + G GP P +P P G++ V GQQ G
Sbjct: 1244 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP-DGLRGLPGSV--GQQGRPG----- 1295
Query: 287 STAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGG 346
+T Q P PG P P PG L G PG GL P EQ G
Sbjct: 1296 ATGQAGP-PG--PVGPPGLPG--LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP 1350
Query: 347 SVSYSQPGLSG-PTRSIPGYPSSPLPGNPTP 376
S Q G G P S P P P PG P P
Sbjct: 1351 QGSPGQKGEMGIPGASGPIGPGGP-PGLPGP 1380
Score = 38.5 bits (88), Expect = 0.029
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLG-QASLGPTGEL 859
LP + P G L P PG PG PPG + + P + SLG Q GP G+
Sbjct: 516 LPGESGPRGLLGPKGPPGIPG--------PPG--VRGMDGPQGPKGSLGPQGEPGPPGQQ 565
Query: 860 AFSPATGVMGPPSMSG----AGEAPEPALDLLPELTNPDELLSYLGPPDLPTN 908
G+ GP G G +P L +P P GPP N
Sbjct: 566 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGN 618
Score = 33.9 bits (76), Expect = 0.71
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 26/168 (15%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLA--EFTPGPP--PISYQSDI 787
P PP V P G+ G PP P A E T G P P + D
Sbjct: 834 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDG 893
Query: 788 PSSL--------LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN--LGAP--PGPQL 835
P+ L L L P+G P +PG G S +G P PGPQ
Sbjct: 894 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQ- 952
Query: 836 HHSNPPPASRQSLG----QASLGPTGELAFSPATGVMGPPSMSG-AGE 878
PP + G + +GPTG G+ GP G AGE
Sbjct: 953 ----GPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE 996
Score = 33.9 bits (76), Expect = 0.71
Identities = 50/188 (26%), Positives = 64/188 (34%), Gaps = 22/188 (11%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPST--PTLAEFTPGPPPISYQSDIPS 789
P+ PP P P PG PG P P GPP ++ +
Sbjct: 942 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 1001
Query: 790 SLLT-SEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP--GPQLHHS-------- 838
+ +K T + P G P G PG ++ G P GPQ H
Sbjct: 1002 EVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGAD-GEPGARGPQGHFGAKGDEGTR 1060
Query: 839 --NPPPASRQSLGQASL-GPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 895
N PP +G L GP+GE + G MGPP G P P+ P
Sbjct: 1061 GFNGPPGP---IGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ--GPPG 1115
Query: 896 LLSYLGPP 903
+ LGPP
Sbjct: 1116 GVGNLGPP 1123
Score = 31.2 bits (69), Expect = 4.6
Identities = 50/191 (26%), Positives = 65/191 (34%), Gaps = 29/191 (15%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 794
P V P G+ PG E PP P PT + G P P+ + D P
Sbjct: 1141 PGVKGPRGERGEKGESGQPG---EPGPPG-PKGPTGDDGPKGNPGPVGFPGD-PGP--PG 1193
Query: 795 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP--QLHHSNPPPASRQSLGQAS 852
E G PG+PG N PPGP + + P + + G+ +
Sbjct: 1194 EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN--GPPGPLGKRGPAGSPGSEGRQGGKGA 1251
Query: 853 LGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLL------------PELTNPDELLSYL 900
G G + TG +GP AG A +P D L P T +
Sbjct: 1252 KGDPGAIGAPGKTGPVGP-----AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV 1306
Query: 901 GPPDLPTNNND 911
GPP LP D
Sbjct: 1307 GPPGLPGLRGD 1317
Score = 30.8 bits (68), Expect = 6.0
Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 25/125 (20%)
Query: 807 PAGHLDPTHNPGTPGL--HTSNLGAP-----PGPQ-----LHHSNPPPASRQSLGQ---A 851
P G PT +PG PGL LG P PG Q L P AS + +
Sbjct: 687 PKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSG 746
Query: 852 SLGPTGELAFSPATGVMGPPSMSG--------AGEAPE--PALDLLPELTNPDELLSYLG 901
GP GE + G GP +G G+ P P LP P+ G
Sbjct: 747 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG 806
Query: 902 PPDLP 906
PP P
Sbjct: 807 PPGPP 811
Score = 30.4 bits (67), Expect = 7.9
Identities = 32/118 (27%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ----LHHSNPPPASRQSLG-QASLGP 855
LP P G P PG PG L PG + PP +G Q + G
Sbjct: 792 LPGPQGPNGFPGPKGPPGPPG--KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGE 849
Query: 856 TGELAFSPATGVMGPPSMSG-------AGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
TG + G GPP G G +P P P L + G LP
Sbjct: 850 TGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLP 907
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 59.7 bits (143), Expect = 1e-08
Identities = 108/424 (25%), Positives = 130/424 (30%), Gaps = 121/424 (28%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P K LP P G + Q T P G VV G G+P GP G
Sbjct: 790 PGKDGLPGHPGQRGEVGF------QGKTGPPGPPGVVGPQGAAGETGPMGERGHP-GPPG 842
Query: 66 SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT--TG 123
P G +PG AG ++G G PGAPG G
Sbjct: 843 PP-GEQGLPGTAG--------------------------KEGTKGDPGPPGAPGKDGPAG 875
Query: 124 YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYG 183
G PG GLP A P + + A + + G
Sbjct: 876 LRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP---------------------GERG 914
Query: 184 AMGAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTR 233
A G+G GP+GP AG + PTG GV GP GL P P
Sbjct: 915 AAGSGGPIGPP--GRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL-PGPAGPPG 971
Query: 234 AAGMT--------PLYAGQR--LPQHGYPGPP-QAQPLPRQGVKRTYSEVYPGQQYLQG- 281
AG P G + +HG PGPP P+ + G E PG + QG
Sbjct: 972 VAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGE--PGARGPQGH 1029
Query: 282 -------------GQYAPSTAQFAPSPGQP--------PAPSPSYPGHRLPL-------Q 313
G P Q P P P P PG R P
Sbjct: 1030 FGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGP 1089
Query: 314 QGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGN 373
QG + GP G +P E +G +PG+ GP S PG
Sbjct: 1090 QGPPGGVGNLGPPGEKGEPGE---------SGSPGIQGEPGVKGPRGERGEKGESGQPGE 1140
Query: 374 PTPP 377
P PP
Sbjct: 1141 PGPP 1144
Score = 47.4 bits (111), Expect = 6e-05
Identities = 109/435 (25%), Positives = 143/435 (32%), Gaps = 60/435 (13%)
Query: 8 KPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVV-----TTVWGVGNATQSQVLGN 59
KP LP P DG + E P + P+G + V GV +
Sbjct: 570 KPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKG 629
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G G P + GV G + P G+ EG +G G PG PG
Sbjct: 630 EKGEDGFPGFKGDI-GVKGDRGEVGVPGSRGEDG-PEG-------PKGRTGPTGDPGPPG 680
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
G G G GLP + R + A+ A + + + +
Sbjct: 681 LM-GEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPR 739
Query: 180 SQYGAMGAGQSFNSQFLQHG-GPRGP----SVPAGMNPTGIGGVMGPSGLSPLAMNPTRA 234
Q G GA ++ G GP GP +P P G G GP G P
Sbjct: 740 GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG-------PPGK 792
Query: 235 AGMTPLYAGQR-----LPQHGYPGPP-QAQPLPRQGVKRTYSE-VYPGQQYLQGGQYAPS 287
G+ P + GQR + G PGPP P G E +PG G Q P
Sbjct: 793 DGL-PGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 851
Query: 288 TA---QFAPSPGQPPAPSPSYPG--HRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGAS 342
TA PG P AP P P ++G+ + PG G +G S
Sbjct: 852 TAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG----------NEGPS 901
Query: 343 FNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLK 402
G PG G S G P P PG P P P ++ P + K P P +
Sbjct: 902 GPPGPA--GSPGERGAAGS--GGPIGP-PGRPGPQGPPGAAGEKGVPGE--KGPIGPTGR 954
Query: 403 PNLNSLHSSPSGSGP 417
+ P +GP
Sbjct: 955 DGVQGPVGLPGPAGP 969
Score = 45.4 bits (106), Expect = 2e-04
Identities = 73/255 (28%), Positives = 89/255 (34%), Gaps = 46/255 (18%)
Query: 60 PMGPAGS--PSGSSMMPGVAGGSSALTSPQCLGQQAFA-----EGGANKGYVQ--QGVYS 110
P GP G P+GS G GG A P +G G A K +G+
Sbjct: 1206 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1265
Query: 111 RGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAA 170
G G PG TG AG PG +G P A A
Sbjct: 1266 SVGQQGRPG-ATGQAGPPGPVGPPGLPGLRGD-------AGAKGEKGHPGLIGLIGPPGE 1317
Query: 171 LQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGM----NPTGIGGVMGPSGLS 225
EK + L G G+ GQ GP GP P G+ P G G GP G
Sbjct: 1318 QGEKGDRGLP--GPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGG-- 1373
Query: 226 PLAMNPTRAAGMTPLYAGQRLPQHGYPGPP--QAQPLPRQGVKRTYSEVYPGQQYLQGGQ 283
P G+ Q P G+PGPP QPLP Q K+T V G + +Q +
Sbjct: 1374 -----PKGEKGV------QGPP--GHPGPPGEVIQPLPIQMPKKTRRSV-DGSRLMQEDE 1419
Query: 284 YAPSTAQFAPSPGQP 298
P+ +PG P
Sbjct: 1420 AIPT----GGAPGSP 1430
Score = 42.0 bits (97), Expect = 0.003
Identities = 59/234 (25%), Positives = 81/234 (34%), Gaps = 41/234 (17%)
Query: 714 PSVME--MIAALGPGA-APFAPLQPPSV---PAPSDYPGQGSSFLGPGTFPESFPPTTPS 767
P+V+E M+ PG P + PP + P P PG+ G P P
Sbjct: 281 PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPG 340
Query: 768 TPTLAEFT-------PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTP 820
T + F GP + ++ + L + + P M G P PG+P
Sbjct: 341 TSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSP 400
Query: 821 GL--HTSNLG--APPGPQLHHSNPPPASRQSLGQAS-----------------------L 853
GL + +LG P GPQ P A R+ A
Sbjct: 401 GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP 460
Query: 854 GPTGELAFSPATGVMGPPSMSG-AGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
G G + A G+ GPP G G+ E LP + P LL GPP +P
Sbjct: 461 GEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 514
Score = 40.8 bits (94), Expect = 0.006
Identities = 86/320 (26%), Positives = 104/320 (32%), Gaps = 74/320 (23%)
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATAT-ATVAAL 171
G PG G G G PG G P A P +D ++ + V A
Sbjct: 304 GPPGIQG-NPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAA 362
Query: 172 QEKQSQELSQY---------GAMG-------AGQSFNSQFLQHGGPRGPSVPAGMNPTGI 215
QE Q+Q + Q G MG GQ + G GP P G P G+
Sbjct: 363 QEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRG--PQGL 420
Query: 216 GGVMGPSGLSPLAMNPTRAAGMT--PLYAGQR-------LP-QHGYPGPPQAQPLPRQGV 265
G G +G A A GM P G R LP + G+ G AQ LP
Sbjct: 421 TGPPGKAGRRGRA-GADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP-- 477
Query: 266 KRTYSEVYPGQQYLQG--GQYAPSTAQFAPSP-------GQPPAPSPSYPGHR-LPLQQG 315
PG+ +G G+ P P G P P P PG R + QG
Sbjct: 478 --------PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGP--PGVRGMDGPQG 527
Query: 316 MTQSLSV---PGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPG 372
SL PGP G P Q GL GP +I + G
Sbjct: 528 PKGSLGPQGEPGPPGQQGTPGTQ------------------GLPGPQGAIGPHGEKGPQG 569
Query: 373 NPTPPMTPSSSVPYMSPNQE 392
P P P S P P +E
Sbjct: 570 KPGLPGMPGSDGPPGHPGKE 589
Score = 40.0 bits (92), Expect = 0.010
Identities = 87/331 (26%), Positives = 101/331 (30%), Gaps = 75/331 (22%)
Query: 62 GPAGSPSGSSMM--PGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G + PG G SP G+ +G ++G + G PG PG
Sbjct: 1088 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERG--EKGESGQPGEPGPPG 1145
Query: 120 -----FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEK 174
G G PG +G P P
Sbjct: 1146 PKGPTGDDGPKGNPGPVGFPGDPGPPG--------------------------------- 1172
Query: 175 QSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP--- 231
+ Q GA G G P P PTG G GP G A +P
Sbjct: 1173 EGGPRGQDGAKG----------DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1222
Query: 232 TRAAGMTPLYAGQRLPQHGYPGP-----PQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAP 286
R G + G GP P +P P G++ V GQQ G
Sbjct: 1223 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP-DGLRGLPGSV--GQQGRPG----- 1274
Query: 287 STAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGG 346
+T Q P PG P P PG L G PG GL P EQ G
Sbjct: 1275 ATGQAGP-PG--PVGPPGLPG--LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP 1329
Query: 347 SVSYSQPGLSG-PTRSIPGYPSSPLPGNPTP 376
S Q G G P S P P P PG P P
Sbjct: 1330 QGSPGQKGEMGIPGASGPIGPGGP-PGLPGP 1359
Score = 38.5 bits (88), Expect = 0.029
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLG-QASLGPTGEL 859
LP + P G L P PG PG PPG + + P + SLG Q GP G+
Sbjct: 495 LPGESGPRGLLGPKGPPGIPG--------PPG--VRGMDGPQGPKGSLGPQGEPGPPGQQ 544
Query: 860 AFSPATGVMGPPSMSG----AGEAPEPALDLLPELTNPDELLSYLGPPDLPTN 908
G+ GP G G +P L +P P GPP N
Sbjct: 545 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGN 597
Score = 33.9 bits (76), Expect = 0.71
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 26/168 (15%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLA--EFTPGPP--PISYQSDI 787
P PP V P G+ G PP P A E T G P P + D
Sbjct: 813 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDG 872
Query: 788 PSSL--------LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN--LGAP--PGPQL 835
P+ L L L P+G P +PG G S +G P PGPQ
Sbjct: 873 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQ- 931
Query: 836 HHSNPPPASRQSLG----QASLGPTGELAFSPATGVMGPPSMSG-AGE 878
PP + G + +GPTG G+ GP G AGE
Sbjct: 932 ----GPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE 975
Score = 33.9 bits (76), Expect = 0.71
Identities = 50/188 (26%), Positives = 64/188 (34%), Gaps = 22/188 (11%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPST--PTLAEFTPGPPPISYQSDIPS 789
P+ PP P P PG PG P P GPP ++ +
Sbjct: 921 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 980
Query: 790 SLLT-SEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP--GPQLHHS-------- 838
+ +K T + P G P G PG ++ G P GPQ H
Sbjct: 981 EVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGAD-GEPGARGPQGHFGAKGDEGTR 1039
Query: 839 --NPPPASRQSLGQASL-GPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 895
N PP +G L GP+GE + G MGPP G P P+ P
Sbjct: 1040 GFNGPPGP---IGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ--GPPG 1094
Query: 896 LLSYLGPP 903
+ LGPP
Sbjct: 1095 GVGNLGPP 1102
Score = 31.2 bits (69), Expect = 4.6
Identities = 50/191 (26%), Positives = 65/191 (34%), Gaps = 29/191 (15%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 794
P V P G+ PG E PP P PT + G P P+ + D P
Sbjct: 1120 PGVKGPRGERGEKGESGQPG---EPGPPG-PKGPTGDDGPKGNPGPVGFPGD-PGP--PG 1172
Query: 795 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP--QLHHSNPPPASRQSLGQAS 852
E G PG+PG N PPGP + + P + + G+ +
Sbjct: 1173 EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN--GPPGPLGKRGPAGSPGSEGRQGGKGA 1230
Query: 853 LGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLL------------PELTNPDELLSYL 900
G G + TG +GP AG A +P D L P T +
Sbjct: 1231 KGDPGAIGAPGKTGPVGP-----AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV 1285
Query: 901 GPPDLPTNNND 911
GPP LP D
Sbjct: 1286 GPPGLPGLRGD 1296
Score = 30.8 bits (68), Expect = 6.0
Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 25/125 (20%)
Query: 807 PAGHLDPTHNPGTPGL--HTSNLGAP-----PGPQ-----LHHSNPPPASRQSLGQ---A 851
P G PT +PG PGL LG P PG Q L P AS + +
Sbjct: 666 PKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSG 725
Query: 852 SLGPTGELAFSPATGVMGPPSMSG--------AGEAPE--PALDLLPELTNPDELLSYLG 901
GP GE + G GP +G G+ P P LP P+ G
Sbjct: 726 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG 785
Query: 902 PPDLP 906
PP P
Sbjct: 786 PPGPP 790
Score = 30.4 bits (67), Expect = 7.9
Identities = 32/118 (27%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ----LHHSNPPPASRQSLG-QASLGP 855
LP P G P PG PG L PG + PP +G Q + G
Sbjct: 771 LPGPQGPNGFPGPKGPPGPPG--KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGE 828
Query: 856 TGELAFSPATGVMGPPSMSG-------AGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
TG + G GPP G G +P P P L + G LP
Sbjct: 829 TGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLP 886
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 59.7 bits (143), Expect = 1e-08
Identities = 108/424 (25%), Positives = 130/424 (30%), Gaps = 121/424 (28%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG 65
P K LP P G + Q T P G VV G G+P GP G
Sbjct: 897 PGKDGLPGHPGQRGEVGF------QGKTGPPGPPGVVGPQGAAGETGPMGERGHP-GPPG 949
Query: 66 SPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT--TG 123
P G +PG AG ++G G PGAPG G
Sbjct: 950 PP-GEQGLPGTAG--------------------------KEGTKGDPGPPGAPGKDGPAG 982
Query: 124 YAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYG 183
G PG GLP A P + + A + + G
Sbjct: 983 LRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP---------------------GERG 1021
Query: 184 AMGAGQSFNSQFLQHGGPRGPSVPAG----------MNPTGIGGVMGPSGLSPLAMNPTR 233
A G+G GP+GP AG + PTG GV GP GL P P
Sbjct: 1022 AAGSGGPIGPP--GRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL-PGPAGPPG 1078
Query: 234 AAGMT--------PLYAGQR--LPQHGYPGPP-QAQPLPRQGVKRTYSEVYPGQQYLQG- 281
AG P G + +HG PGPP P+ + G E PG + QG
Sbjct: 1079 VAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGE--PGARGPQGH 1136
Query: 282 -------------GQYAPSTAQFAPSPGQP--------PAPSPSYPGHRLPL-------Q 313
G P Q P P P P PG R P
Sbjct: 1137 FGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGP 1196
Query: 314 QGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGN 373
QG + GP G +P E +G +PG+ GP S PG
Sbjct: 1197 QGPPGGVGNLGPPGEKGEPGE---------SGSPGIQGEPGVKGPRGERGEKGESGQPGE 1247
Query: 374 PTPP 377
P PP
Sbjct: 1248 PGPP 1251
Score = 47.4 bits (111), Expect = 6e-05
Identities = 109/435 (25%), Positives = 143/435 (32%), Gaps = 60/435 (13%)
Query: 8 KPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVV-----TTVWGVGNATQSQVLGN 59
KP LP P DG + E P + P+G + V GV +
Sbjct: 677 KPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKG 736
Query: 60 PMGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
G G P + GV G + P G+ EG +G G PG PG
Sbjct: 737 EKGEDGFPGFKGDI-GVKGDRGEVGVPGSRGEDG-PEG-------PKGRTGPTGDPGPPG 787
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQEL 179
G G G GLP + R + A+ A + + + +
Sbjct: 788 LM-GEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPR 846
Query: 180 SQYGAMGAGQSFNSQFLQHG-GPRGP----SVPAGMNPTGIGGVMGPSGLSPLAMNPTRA 234
Q G GA ++ G GP GP +P P G G GP G P
Sbjct: 847 GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG-------PPGK 899
Query: 235 AGMTPLYAGQR-----LPQHGYPGPP-QAQPLPRQGVKRTYSE-VYPGQQYLQGGQYAPS 287
G+ P + GQR + G PGPP P G E +PG G Q P
Sbjct: 900 DGL-PGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 958
Query: 288 TA---QFAPSPGQPPAPSPSYPG--HRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGAS 342
TA PG P AP P P ++G+ + PG G +G S
Sbjct: 959 TAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG----------NEGPS 1008
Query: 343 FNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLK 402
G PG G S G P P PG P P P ++ P + K P P +
Sbjct: 1009 GPPGPA--GSPGERGAAGS--GGPIGP-PGRPGPQGPPGAAGEKGVPGE--KGPIGPTGR 1061
Query: 403 PNLNSLHSSPSGSGP 417
+ P +GP
Sbjct: 1062 DGVQGPVGLPGPAGP 1076
Score = 45.4 bits (106), Expect = 2e-04
Identities = 73/255 (28%), Positives = 89/255 (34%), Gaps = 46/255 (18%)
Query: 60 PMGPAGS--PSGSSMMPGVAGGSSALTSPQCLGQQAFA-----EGGANKGYVQ--QGVYS 110
P GP G P+GS G GG A P +G G A K +G+
Sbjct: 1313 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1372
Query: 111 RGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAA 170
G G PG TG AG PG +G P A A
Sbjct: 1373 SVGQQGRPG-ATGQAGPPGPVGPPGLPGLRGD-------AGAKGEKGHPGLIGLIGPPGE 1424
Query: 171 LQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGM----NPTGIGGVMGPSGLS 225
EK + L G G+ GQ GP GP P G+ P G G GP G
Sbjct: 1425 QGEKGDRGLP--GPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGG-- 1480
Query: 226 PLAMNPTRAAGMTPLYAGQRLPQHGYPGPP--QAQPLPRQGVKRTYSEVYPGQQYLQGGQ 283
P G+ Q P G+PGPP QPLP Q K+T V G + +Q +
Sbjct: 1481 -----PKGEKGV------QGPP--GHPGPPGEVIQPLPIQMPKKTRRSV-DGSRLMQEDE 1526
Query: 284 YAPSTAQFAPSPGQP 298
P+ +PG P
Sbjct: 1527 AIPT----GGAPGSP 1537
Score = 42.0 bits (97), Expect = 0.003
Identities = 59/234 (25%), Positives = 81/234 (34%), Gaps = 41/234 (17%)
Query: 714 PSVME--MIAALGPGA-APFAPLQPPSV---PAPSDYPGQGSSFLGPGTFPESFPPTTPS 767
P+V+E M+ PG P + PP + P P PG+ G P P
Sbjct: 388 PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPG 447
Query: 768 TPTLAEFT-------PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTP 820
T + F GP + ++ + L + + P M G P PG+P
Sbjct: 448 TSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSP 507
Query: 821 GL--HTSNLG--APPGPQLHHSNPPPASRQSLGQAS-----------------------L 853
GL + +LG P GPQ P A R+ A
Sbjct: 508 GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP 567
Query: 854 GPTGELAFSPATGVMGPPSMSG-AGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
G G + A G+ GPP G G+ E LP + P LL GPP +P
Sbjct: 568 GEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 621
Score = 40.8 bits (94), Expect = 0.006
Identities = 86/320 (26%), Positives = 104/320 (32%), Gaps = 74/320 (23%)
Query: 113 GYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATAT-ATVAAL 171
G PG G G G PG G P A P +D ++ + V A
Sbjct: 411 GPPGIQG-NPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAA 469
Query: 172 QEKQSQELSQY---------GAMG-------AGQSFNSQFLQHGGPRGPSVPAGMNPTGI 215
QE Q+Q + Q G MG GQ + G GP P G P G+
Sbjct: 470 QEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRG--PQGL 527
Query: 216 GGVMGPSGLSPLAMNPTRAAGMT--PLYAGQR-------LP-QHGYPGPPQAQPLPRQGV 265
G G +G A A GM P G R LP + G+ G AQ LP
Sbjct: 528 TGPPGKAGRRGRA-GADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP-- 584
Query: 266 KRTYSEVYPGQQYLQG--GQYAPSTAQFAPSP-------GQPPAPSPSYPGHR-LPLQQG 315
PG+ +G G+ P P G P P P PG R + QG
Sbjct: 585 --------PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGP--PGVRGMDGPQG 634
Query: 316 MTQSLSV---PGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPG 372
SL PGP G P Q GL GP +I + G
Sbjct: 635 PKGSLGPQGEPGPPGQQGTPGTQ------------------GLPGPQGAIGPHGEKGPQG 676
Query: 373 NPTPPMTPSSSVPYMSPNQE 392
P P P S P P +E
Sbjct: 677 KPGLPGMPGSDGPPGHPGKE 696
Score = 40.0 bits (92), Expect = 0.010
Identities = 87/331 (26%), Positives = 101/331 (30%), Gaps = 75/331 (22%)
Query: 62 GPAGSPSGSSMM--PGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G + PG G SP G+ +G ++G + G PG PG
Sbjct: 1195 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERG--EKGESGQPGEPGPPG 1252
Query: 120 -----FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEK 174
G G PG +G P P
Sbjct: 1253 PKGPTGDDGPKGNPGPVGFPGDPGPPG--------------------------------- 1279
Query: 175 QSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP--- 231
+ Q GA G G P P PTG G GP G A +P
Sbjct: 1280 EGGPRGQDGAKG----------DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1329
Query: 232 TRAAGMTPLYAGQRLPQHGYPGP-----PQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAP 286
R G + G GP P +P P G++ V GQQ G
Sbjct: 1330 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP-DGLRGLPGSV--GQQGRPG----- 1381
Query: 287 STAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGG 346
+T Q P PG P P PG L G PG GL P EQ G
Sbjct: 1382 ATGQAGP-PG--PVGPPGLPG--LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP 1436
Query: 347 SVSYSQPGLSG-PTRSIPGYPSSPLPGNPTP 376
S Q G G P S P P P PG P P
Sbjct: 1437 QGSPGQKGEMGIPGASGPIGPGGP-PGLPGP 1466
Score = 38.5 bits (88), Expect = 0.029
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLG-QASLGPTGEL 859
LP + P G L P PG PG PPG + + P + SLG Q GP G+
Sbjct: 602 LPGESGPRGLLGPKGPPGIPG--------PPG--VRGMDGPQGPKGSLGPQGEPGPPGQQ 651
Query: 860 AFSPATGVMGPPSMSG----AGEAPEPALDLLPELTNPDELLSYLGPPDLPTN 908
G+ GP G G +P L +P P GPP N
Sbjct: 652 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGN 704
Score = 33.9 bits (76), Expect = 0.71
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 26/168 (15%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLA--EFTPGPP--PISYQSDI 787
P PP V P G+ G PP P A E T G P P + D
Sbjct: 920 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDG 979
Query: 788 PSSL--------LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN--LGAP--PGPQL 835
P+ L L L P+G P +PG G S +G P PGPQ
Sbjct: 980 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQ- 1038
Query: 836 HHSNPPPASRQSLG----QASLGPTGELAFSPATGVMGPPSMSG-AGE 878
PP + G + +GPTG G+ GP G AGE
Sbjct: 1039 ----GPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE 1082
Score = 33.9 bits (76), Expect = 0.71
Identities = 50/188 (26%), Positives = 64/188 (34%), Gaps = 22/188 (11%)
Query: 732 PLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPST--PTLAEFTPGPPPISYQSDIPS 789
P+ PP P P PG PG P P GPP ++ +
Sbjct: 1028 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 1087
Query: 790 SLLT-SEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPP--GPQLHHS-------- 838
+ +K T + P G P G PG ++ G P GPQ H
Sbjct: 1088 EVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGAD-GEPGARGPQGHFGAKGDEGTR 1146
Query: 839 --NPPPASRQSLGQASL-GPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 895
N PP +G L GP+GE + G MGPP G P P+ P
Sbjct: 1147 GFNGPPGP---IGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ--GPPG 1201
Query: 896 LLSYLGPP 903
+ LGPP
Sbjct: 1202 GVGNLGPP 1209
Score = 31.2 bits (69), Expect = 4.6
Identities = 50/191 (26%), Positives = 65/191 (34%), Gaps = 29/191 (15%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 794
P V P G+ PG E PP P PT + G P P+ + D P
Sbjct: 1227 PGVKGPRGERGEKGESGQPG---EPGPPG-PKGPTGDDGPKGNPGPVGFPGD-PGP--PG 1279
Query: 795 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP--QLHHSNPPPASRQSLGQAS 852
E G PG+PG N PPGP + + P + + G+ +
Sbjct: 1280 EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN--GPPGPLGKRGPAGSPGSEGRQGGKGA 1337
Query: 853 LGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLL------------PELTNPDELLSYL 900
G G + TG +GP AG A +P D L P T +
Sbjct: 1338 KGDPGAIGAPGKTGPVGP-----AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV 1392
Query: 901 GPPDLPTNNND 911
GPP LP D
Sbjct: 1393 GPPGLPGLRGD 1403
Score = 30.8 bits (68), Expect = 6.0
Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 25/125 (20%)
Query: 807 PAGHLDPTHNPGTPGL--HTSNLGAP-----PGPQ-----LHHSNPPPASRQSLGQ---A 851
P G PT +PG PGL LG P PG Q L P AS + +
Sbjct: 773 PKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSG 832
Query: 852 SLGPTGELAFSPATGVMGPPSMSG--------AGEAPE--PALDLLPELTNPDELLSYLG 901
GP GE + G GP +G G+ P P LP P+ G
Sbjct: 833 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG 892
Query: 902 PPDLP 906
PP P
Sbjct: 893 PPGPP 897
Score = 30.4 bits (67), Expect = 7.9
Identities = 32/118 (27%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 801 LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQ----LHHSNPPPASRQSLG-QASLGP 855
LP P G P PG PG L PG + PP +G Q + G
Sbjct: 878 LPGPQGPNGFPGPKGPPGPPG--KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGE 935
Query: 856 TGELAFSPATGVMGPPSMSG-------AGEAPEPALDLLPELTNPDELLSYLGPPDLP 906
TG + G GPP G G +P P P L + G LP
Sbjct: 936 TGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLP 993
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 58.2 bits (139), Expect = 4e-08
Identities = 79/328 (24%), Positives = 96/328 (29%), Gaps = 62/328 (18%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
GP G P +PG+ G +L P G++ Q G G PG PG
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
PG G P P T + + L
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
G +F + G P P +P M P G G G +G G+ +A NP
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PG P + P Q + + PG G P PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQ 352
P P P PG LP G +PGP G P G
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRI---------GLEGPPGP 741
Query: 353 PGLSGPTRSIPGYPSSPLPGNPTPPMTP 380
PG GP G P LPG P PP P
Sbjct: 742 PGFPGPK----GEPGFALPGPPGPPGLP 765
Score = 57.8 bits (138), Expect = 5e-08
Identities = 100/424 (23%), Positives = 134/424 (31%), Gaps = 85/424 (20%)
Query: 60 PMGPAGSP-----SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGY 114
P+GP GSP +G+S PG G + P G G +G G
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL--KGDDGLQGQ 930
Query: 115 PGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEK 174
PG PG TG G G GLP + + + L
Sbjct: 931 PGLPG-PTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGD 989
Query: 175 QSQELSQYGAMGAGQSFNSQFLQHGGPRG----PSVPAGMNPTGIGGVMGPSGL-SPLAM 229
Q G S GP+G P P + P G+ G +G G P +
Sbjct: 990 PGQP---------GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGV 1040
Query: 230 -NPTRAAGM-----TPLYAGQR----------LPQHGYPGPPQAQPLP----RQGVKRTY 269
P +G+ +P GQ+ + G PGP LP G+K +
Sbjct: 1041 EGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSV 1100
Query: 270 SEV-YPGQQYLQGGQYAPSTAQFAPSPGQP-------PAPSPSYPGHRLPL--------- 312
+ PG G + P F +PG P P +P PG P+
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP 1160
Query: 313 ----QQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGP--TRSIPGYP 366
++G +PGP G +P GQ N G PGLSG +PG P
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKGEP-----GQPGFGNPGPPGL--PGLSGQKGDGGLPGIP 1213
Query: 367 SSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPS 413
+P PG PP P S P + + P P +P P
Sbjct: 1214 GNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPG 1273
Query: 414 GSGP 417
GP
Sbjct: 1274 PEGP 1277
Score = 55.8 bits (133), Expect = 2e-07
Identities = 89/345 (25%), Positives = 116/345 (33%), Gaps = 62/345 (17%)
Query: 57 LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
L P GPAG PS PG G + G+Q +G + G+
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G PG PG G PG LG P A A A
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
+ + L+ G G S G P P +P G+ G+ GP G
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591
Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
G+T + G+R P G PG P P+ G + P G++ +QG
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638
Query: 288 TAQFAPSPGQPPAPSP-SYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGG 346
A +PGQP P P PG Q+++ PG GL P + G
Sbjct: 639 ---VAGNPGQPGIPGPKGDPG----------QTITQPGKPGLPGNPGRDGD---VGLPGD 682
Query: 347 SVSYSQPGLSG--PTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 389
QPGL G ++ PG P LPG P P P P +P
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727
Score = 51.6 bits (122), Expect = 3e-06
Identities = 94/379 (24%), Positives = 121/379 (31%), Gaps = 52/379 (13%)
Query: 62 GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G+ +PG+ G A PQ + G N G G+PG+PG
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAA-----VAAAAATATATATATVAALQEK 174
F G G PG G+P P + + T +
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPP 197
Query: 175 QSQEL-SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
L G G + L GP+G G G+ GP G R
Sbjct: 198 GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK--------GEQGLQGPPGPPGQISEQKR 249
Query: 234 AAGMTPLYAGQRLP-QHGYPGPP--QAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
+ Q LP G PGPP + P P G K G+Q G + P
Sbjct: 250 PIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGE-----KGEQGEPGKRGKPGKDG 304
Query: 291 FAPSPGQPPAPS-PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPT-------EQFNGQGA 341
PG P P P YPG ++G PGP GL E+ N
Sbjct: 305 ENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLP 364
Query: 342 SFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTP---SSSVPYMSPNQEVKSPFL 398
G PG+ GP +PG P + + G P PP P P + P
Sbjct: 365 GLPGEKGERGFPGIQGPP-GLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPG 423
Query: 399 PDLKPNLNSLHSSPSGSGP 417
D +P L P +GP
Sbjct: 424 LDGQPGAPGLPGPPGPAGP 442
Score = 49.3 bits (116), Expect = 2e-05
Identities = 100/389 (25%), Positives = 121/389 (31%), Gaps = 44/389 (11%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGN--------P 60
P LP P G+ +P P G + G + +G P
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGP 1162
Query: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
G G P G +PG AG GQ F G G GG PG PG
Sbjct: 1163 PGEKGKP-GQDGIPGPAGQKGEP------GQPGFGNPGPPGLPGLSGQKGDGGLPGIPGN 1215
Query: 121 T--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G PG G P P + A Q E
Sbjct: 1216 PGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPE 1275
Query: 179 LSQYGAMGAG--QSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAG 236
G G G + Q G P P + P G+ G G GL+ + +P
Sbjct: 1276 -GPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPG- 1333
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
P + G + P G PG A P G+ PG L G PS
Sbjct: 1334 -VPGFPGMKGPS-GVPG--SAGPEGEPGLIGP-----PGPPGLPG----PSGQSIIIKGD 1380
Query: 297 QPPAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGL 355
P P PG + LP QG +PGPTG P + F+G PGL
Sbjct: 1381 AGPPGIPGQPGLKGLPGPQG---PQGLPGPTG---PPGDPGRNGLPGFDGAGGRKGDPGL 1434
Query: 356 SGP--TRSIPGYPS-SPLPGNPTPPMTPS 381
G TR + G P L G P PP T S
Sbjct: 1435 PGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1463
Score = 48.1 bits (113), Expect = 4e-05
Identities = 105/401 (26%), Positives = 124/401 (30%), Gaps = 71/401 (17%)
Query: 6 PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P KP LP P DG +P Q GS + G+G L P G
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713
Query: 63 PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
P G P G PG G G P+ G+ FA G KG +
Sbjct: 714 PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771
Query: 105 QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
G G+PG PG TG G PG G +P V
Sbjct: 772 --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829
Query: 163 TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
L ++ G G G + G P P P + P G G+ G
Sbjct: 830 PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885
Query: 222 SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
+G S M P PGPP +P R GV G LQ
Sbjct: 886 AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928
Query: 281 GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQG 340
G P S G+P P P PG P+ + S G GL P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGP--PG---PMDPNLLGSKGEKGEPGL---PGIPGVSGP 980
Query: 341 ASFNGGSVSYSQPGLSGPTRSIPGYPSSPLP-GNPTPPMTP 380
+ G QPGLSG PG P P P GNP P P
Sbjct: 981 KGYQGLPGDPGQPGLSGQ----PGLPGPPGPKGNPGLPGQP 1017
Score = 47.8 bits (112), Expect = 5e-05
Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)
Query: 725 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 784
PG P PP +P P PG PG + PP PGPP
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859
Query: 785 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 834
E+ + +P P G P +PG PG ++ + PPGP
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 835 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 880
P + L GQ L GPTGE G+ GPP + GE
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 881 EPALDLLPELTNPDELLSYLGPPDLP 906
EP L +P ++ P G P P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993
Score = 47.4 bits (111), Expect = 6e-05
Identities = 100/408 (24%), Positives = 120/408 (29%), Gaps = 103/408 (25%)
Query: 6 PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVG----NATQSQVLG 58
P +P LP P GS + + Q AT P G + G +L
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILT 552
Query: 59 NP-----MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGG 113
P G GSP G+ +PG+ G P G + G KG ++G G
Sbjct: 553 FPGMKGDKGELGSP-GAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKG--ERGPPGNPG 609
Query: 114 YPGAPGFT-------------------TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVA 154
PG PG G AG PG G+P P TQ
Sbjct: 610 LPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPG 669
Query: 155 AAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTG 214
G P P +P G
Sbjct: 670 NPGRDGDV------------------------------------GLPGDPGLPGQPGLPG 693
Query: 215 IGGVMGPSGLSPLAM-NPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVY 273
I G G G+ + + P G G PGPP A P R E
Sbjct: 694 IPGSKGEPGIPGIGLPGPPGPKGFP-----------GIPGPPGAPGTP----GRIGLEGP 738
Query: 274 PGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT 333
PG G + P A PG PP P P PG + L G PGP G P
Sbjct: 739 PGPPGFPGPKGEPGFA----LPG-PPGP-PGLPGFKGAL--GPKGDRGFPGPPG----PP 786
Query: 334 EQFNGQGASFNGGSVS-YSQPGLSGPTRSIPGYPSSPLPGNPTPPMTP 380
+ G G V QPG GP PG P + G P PP P
Sbjct: 787 GRTGLDGLPGPKGDVGPNGQPGPMGP----PGLPGIGVQGPPGPPGIP 830
Score = 46.2 bits (108), Expect = 1e-04
Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)
Query: 724 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 781
GP P P P P +P PG GT E P +P P L + PGPP I
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151
Query: 782 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 837
P S++ S LP G+ P G PG T G PPGP +
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205
Query: 838 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 895
PP P + ++G GP GE G+ GPP G + +D+ E D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260
Query: 896 -LLSYLGPPDLP 906
L GPP P
Sbjct: 261 GLPGDRGPPGPP 272
Score = 43.1 bits (100), Expect = 0.001
Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)
Query: 729 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 779
P P QP P +P PG L GP FP PP P TP E PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Query: 780 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 839
P L LP G L P + G PG PPGP
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785
Query: 840 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 888
P L GP G++ + G MGPP + G G P +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Score = 42.7 bits (99), Expect = 0.002
Identities = 63/219 (28%), Positives = 71/219 (32%), Gaps = 35/219 (15%)
Query: 720 IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 777
I+++G P P P +P PG S PG P P L F TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128
Query: 778 PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 833
PP S P + L E P Q P G G PG G P P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187
Query: 834 QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 881
+ PP P G L GP GE F GV GPP G +P
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244
Query: 882 PALD------------LLPELTNPDELLSYLGPPDLPTN 908
PAL+ P T L GPP LP N
Sbjct: 1245 PALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGN 1283
Score = 42.0 bits (97), Expect = 0.003
Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)
Query: 722 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 779
A GP P P P P P PG +F PG + +P P L PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575
Query: 780 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 839
Q +P L K P + G P NPG PGL
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613
Query: 840 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 899
P + +G GP G + GV G P G P P D P + ++
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661
Query: 900 LGPPDLPTNNNDD 912
G P LP N D
Sbjct: 662 PGKPGLPGNPGRD 674
Score = 41.6 bits (96), Expect = 0.003
Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)
Query: 725 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 782
PGA P+ PP P PG+ + PGT E P P P G P +
Sbjct: 868 PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 783 Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 828
Q +P T EK + P P G +DP PG PG+ +
Sbjct: 923 GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978
Query: 829 APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 885
P G Q +P P S Q GP G G++GPP + G G+ P
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038
Query: 886 LLPELTNPDELLSYLGPPDLPTNNND 911
+ P + G P LP D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 40.0 bits (92), Expect = 0.010
Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)
Query: 725 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 767
PGAA P PP S+P P GQ + PG + P PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447
Query: 768 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 826
PGPP + + +K C G P PG PG
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500
Query: 827 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 886
L PPG S P + GQA G TG G G P G+ P L
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552
Query: 887 LPELTNPDELLSYLGPPDLP 906
P + L G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 37.0 bits (84), Expect = 0.084
Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 794
P +P YPG+ G ++ PP P L PG I + +I L
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 795 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 854
EK P P PG PG + + PPGP P R G G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412
Query: 855 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 911
P G ++ G+ G P G P PA +P P + + GPP P + D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464
Score = 34.7 bits (78), Expect = 0.42
Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 792
P + PS PG PG PP P + + GPP I Q +
Sbjct: 1338 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1394
Query: 793 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 830
LP P G PT PG PG + T L P
Sbjct: 1395 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1446
Query: 831 PGPQLHHSNPPPASRQSLGQASL 853
PGP P P S+ L
Sbjct: 1447 PGPDGLQGPPGPPGTSSVAHGFL 1469
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 58.2 bits (139), Expect = 4e-08
Identities = 79/328 (24%), Positives = 96/328 (29%), Gaps = 62/328 (18%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
GP G P +PG+ G +L P G++ Q G G PG PG
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
PG G P P T + + L
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
G +F + G P P +P M P G G G +G G+ +A NP
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PG P + P Q + + PG G P PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQ 352
P P P PG LP G +PGP G P G
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRI---------GLEGPPGP 741
Query: 353 PGLSGPTRSIPGYPSSPLPGNPTPPMTP 380
PG GP G P LPG P PP P
Sbjct: 742 PGFPGPK----GEPGFALPGPPGPPGLP 765
Score = 55.8 bits (133), Expect = 2e-07
Identities = 89/345 (25%), Positives = 116/345 (33%), Gaps = 62/345 (17%)
Query: 57 LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
L P GPAG PS PG G + G+Q +G + G+
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G PG PG G PG LG P A A A
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
+ + L+ G G S G P P +P G+ G+ GP G
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591
Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
G+T + G+R P G PG P P+ G + P G++ +QG
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638
Query: 288 TAQFAPSPGQPPAPSP-SYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGG 346
A +PGQP P P PG Q+++ PG GL P + G
Sbjct: 639 ---VAGNPGQPGIPGPKGDPG----------QTITQPGKPGLPGNPGRDGD---VGLPGD 682
Query: 347 SVSYSQPGLSG--PTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 389
QPGL G ++ PG P LPG P P P P +P
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727
Score = 55.1 bits (131), Expect = 3e-07
Identities = 100/423 (23%), Positives = 134/423 (31%), Gaps = 85/423 (20%)
Query: 60 PMGPAGSP-----SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGY 114
P+GP GSP +G+S PG G + P G G +G G
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL--KGDDGLQGQ 930
Query: 115 PGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEK 174
PG PG TG G G GLP + + + L
Sbjct: 931 PGLPG-PTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGD 989
Query: 175 QSQELSQYGAMGAGQSFNSQFLQHGGPRG----PSVPAGMNPTGIGGVMGPSGL-SPLAM 229
Q G S GP+G P P + P G+ G +G G P +
Sbjct: 990 PGQP---------GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGV 1040
Query: 230 -NPTRAAGM-----TPLYAGQR----------LPQHGYPGPPQAQPLP----RQGVKRTY 269
P +G+ +P GQ+ + G PGP LP G+K +
Sbjct: 1041 EGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSV 1100
Query: 270 SEV-YPGQQYLQGGQYAPSTAQFAPSPGQP-------PAPSPSYPGHRLPL--------- 312
+ PG G + P F +PG P P +P PG P+
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP 1160
Query: 313 ----QQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGP--TRSIPGYP 366
++G +PGP G +P GQ N G PGLSG +PG P
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKGEP-----GQPGFGNPGPPGL--PGLSGQKGDGGLPGIP 1213
Query: 367 SSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPS 413
+P PG PP P S P + + P P +P L P
Sbjct: 1214 GNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPG 1273
Query: 414 GSG 416
G
Sbjct: 1274 LPG 1276
Score = 51.6 bits (122), Expect = 3e-06
Identities = 94/379 (24%), Positives = 121/379 (31%), Gaps = 52/379 (13%)
Query: 62 GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G+ +PG+ G A PQ + G N G G+PG+PG
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAA-----VAAAAATATATATATVAALQEK 174
F G G PG G+P P + + T +
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPP 197
Query: 175 QSQEL-SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
L G G + L GP+G G G+ GP G R
Sbjct: 198 GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK--------GEQGLQGPPGPPGQISEQKR 249
Query: 234 AAGMTPLYAGQRLP-QHGYPGPP--QAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
+ Q LP G PGPP + P P G K G+Q G + P
Sbjct: 250 PIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGE-----KGEQGEPGKRGKPGKDG 304
Query: 291 FAPSPGQPPAPS-PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPT-------EQFNGQGA 341
PG P P P YPG ++G PGP GL E+ N
Sbjct: 305 ENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLP 364
Query: 342 SFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTP---SSSVPYMSPNQEVKSPFL 398
G PG+ GP +PG P + + G P PP P P + P
Sbjct: 365 GLPGEKGERGFPGIQGPP-GLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPG 423
Query: 399 PDLKPNLNSLHSSPSGSGP 417
D +P L P +GP
Sbjct: 424 LDGQPGAPGLPGPPGPAGP 442
Score = 48.5 bits (114), Expect = 3e-05
Identities = 106/418 (25%), Positives = 127/418 (30%), Gaps = 66/418 (15%)
Query: 6 PMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNP----- 60
P +P L P G+ P Q P G V G Q G+P
Sbjct: 1014 PGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSI 1073
Query: 61 -----MGPAGSPS--------------GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANK 101
GP G P G +PG+ G A P G K
Sbjct: 1074 GLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK 1133
Query: 102 GYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATAT 161
G G G PG PG G G PG G P +P D A
Sbjct: 1134 GI--SGPPGNPGLPGEPG-PVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFG 1190
Query: 162 ATATATVAALQEKQSQELSQYGAMG----AGQSFNSQFLQHGGPRGPSVPAGM------N 211
+ L Q + G G G F G +GP P G
Sbjct: 1191 NPGPPGLPGLSG-QKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 212 PTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSE 271
P G G GP G P P G+ P G + + G PG P LP G+K
Sbjct: 1250 PKGNPGPQGPPG-RPGLPGPEGPPGL-PGNGGIK-GEKGNPGQPGLPGLP--GLKGD--- 1301
Query: 272 VYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPL-------QQGMTQSLSVPG 324
G LQG P PG P P +PG + P +G + PG
Sbjct: 1302 --QGPPGLQGNPGRPGLNGMKGDPGLPGV--PGFPGMKGPSGVPGSAGPEGEPGLIGPPG 1357
Query: 325 PTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSP--LPGNPTPPMTP 380
P GL +GQ G + PG G + +PG P P LPG PP P
Sbjct: 1358 PPGLPGP-----SGQSIIIKGDAGPPGIPGQPG-LKGLPG-PQGPQGLPGPTGPPGDP 1408
Score = 48.1 bits (113), Expect = 4e-05
Identities = 105/401 (26%), Positives = 124/401 (30%), Gaps = 71/401 (17%)
Query: 6 PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P KP LP P DG +P Q GS + G+G L P G
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713
Query: 63 PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
P G P G PG G G P+ G+ FA G KG +
Sbjct: 714 PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771
Query: 105 QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
G G+PG PG TG G PG G +P V
Sbjct: 772 --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829
Query: 163 TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
L ++ G G G + G P P P + P G G+ G
Sbjct: 830 PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885
Query: 222 SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
+G S M P PGPP +P R GV G LQ
Sbjct: 886 AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928
Query: 281 GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQG 340
G P S G+P P P PG P+ + S G GL P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGP--PG---PMDPNLLGSKGEKGEPGL---PGIPGVSGP 980
Query: 341 ASFNGGSVSYSQPGLSGPTRSIPGYPSSPLP-GNPTPPMTP 380
+ G QPGLSG PG P P P GNP P P
Sbjct: 981 KGYQGLPGDPGQPGLSGQ----PGLPGPPGPKGNPGLPGQP 1017
Score = 47.8 bits (112), Expect = 5e-05
Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)
Query: 725 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 784
PG P PP +P P PG PG + PP PGPP
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859
Query: 785 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 834
E+ + +P P G P +PG PG ++ + PPGP
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 835 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 880
P + L GQ L GPTGE G+ GPP + GE
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 881 EPALDLLPELTNPDELLSYLGPPDLP 906
EP L +P ++ P G P P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993
Score = 47.4 bits (111), Expect = 6e-05
Identities = 100/408 (24%), Positives = 120/408 (29%), Gaps = 103/408 (25%)
Query: 6 PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVG----NATQSQVLG 58
P +P LP P GS + + Q AT P G + G +L
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILT 552
Query: 59 NP-----MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGG 113
P G GSP G+ +PG+ G P G + G KG ++G G
Sbjct: 553 FPGMKGDKGELGSP-GAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKG--ERGPPGNPG 609
Query: 114 YPGAPGFT-------------------TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVA 154
PG PG G AG PG G+P P TQ
Sbjct: 610 LPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPG 669
Query: 155 AAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTG 214
G P P +P G
Sbjct: 670 NPGRDGDV------------------------------------GLPGDPGLPGQPGLPG 693
Query: 215 IGGVMGPSGLSPLAM-NPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVY 273
I G G G+ + + P G G PGPP A P R E
Sbjct: 694 IPGSKGEPGIPGIGLPGPPGPKGFP-----------GIPGPPGAPGTP----GRIGLEGP 738
Query: 274 PGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT 333
PG G + P A PG PP P P PG + L G PGP G P
Sbjct: 739 PGPPGFPGPKGEPGFA----LPG-PPGP-PGLPGFKGAL--GPKGDRGFPGPPG----PP 786
Query: 334 EQFNGQGASFNGGSVS-YSQPGLSGPTRSIPGYPSSPLPGNPTPPMTP 380
+ G G V QPG GP PG P + G P PP P
Sbjct: 787 GRTGLDGLPGPKGDVGPNGQPGPMGP----PGLPGIGVQGPPGPPGIP 830
Score = 47.4 bits (111), Expect = 6e-05
Identities = 100/390 (25%), Positives = 120/390 (30%), Gaps = 52/390 (13%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAG-SP 67
P LP P G+ +P P G + S GNP P P
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGI------------SGPPGNPGLPGEPGP 1150
Query: 68 SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTT----- 122
G PG G P GQ KG Q + G PG PG +
Sbjct: 1151 VGGGGHPGQPGPPGEKGKP---GQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG 1207
Query: 123 GYAGGPGGLGLPSHAARPSTD-FTQAAAAAAVAAAAATATATATATVAALQEKQSQEL-- 179
G G PG GLP P F + A L
Sbjct: 1208 GLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPG 1267
Query: 180 --SQYGAMGAG--QSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAA 235
G G G + Q G P P + P G+ G G GL+ + +P
Sbjct: 1268 PEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPG 1327
Query: 236 GMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSP 295
P + G + P G PG A P G+ PG L G PS
Sbjct: 1328 --VPGFPGMKGPS-GVPG--SAGPEGEPGLIGP-----PGPPGLPG----PSGQSIIIKG 1373
Query: 296 GQPPAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPG 354
P P PG + LP QG +PGPTG P + F+G PG
Sbjct: 1374 DAGPPGIPGQPGLKGLPGPQG---PQGLPGPTG---PPGDPGRNGLPGFDGAGGRKGDPG 1427
Query: 355 LSGP--TRSIPGYPS-SPLPGNPTPPMTPS 381
L G TR + G P L G P PP T S
Sbjct: 1428 LPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1457
Score = 46.2 bits (108), Expect = 1e-04
Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)
Query: 724 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 781
GP P P P P +P PG GT E P +P P L + PGPP I
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151
Query: 782 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 837
P S++ S LP G+ P G PG T G PPGP +
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205
Query: 838 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 895
PP P + ++G GP GE G+ GPP G + +D+ E D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260
Query: 896 -LLSYLGPPDLP 906
L GPP P
Sbjct: 261 GLPGDRGPPGPP 272
Score = 44.3 bits (103), Expect = 5e-04
Identities = 63/219 (28%), Positives = 72/219 (32%), Gaps = 41/219 (18%)
Query: 720 IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 777
I+++G P P P +P PG S PG P P L F TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128
Query: 778 PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 833
PP S P + L E P Q P G G PG G P P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187
Query: 834 QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 881
+ PP P G L GP GE F GV GPP G +P
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244
Query: 882 PALD------------LLPELTNPDELLSYLGPPDLPTN 908
PAL+ P L P+ GPP LP N
Sbjct: 1245 PALEGPKGNPGPQGPPGRPGLPGPE------GPPGLPGN 1277
Score = 43.1 bits (100), Expect = 0.001
Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)
Query: 729 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 779
P P QP P +P PG L GP FP PP P TP E PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Query: 780 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 839
P L LP G L P + G PG PPGP
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785
Query: 840 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 888
P L GP G++ + G MGPP + G G P +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Score = 42.0 bits (97), Expect = 0.003
Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)
Query: 722 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 779
A GP P P P P P PG +F PG + +P P L PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575
Query: 780 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 839
Q +P L K P + G P NPG PGL
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613
Query: 840 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 899
P + +G GP G + GV G P G P P D P + ++
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661
Query: 900 LGPPDLPTNNNDD 912
G P LP N D
Sbjct: 662 PGKPGLPGNPGRD 674
Score = 41.6 bits (96), Expect = 0.003
Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)
Query: 725 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 782
PGA P+ PP P PG+ + PGT E P P P G P +
Sbjct: 868 PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 783 Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 828
Q +P T EK + P P G +DP PG PG+ +
Sbjct: 923 GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978
Query: 829 APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 885
P G Q +P P S Q GP G G++GPP + G G+ P
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038
Query: 886 LLPELTNPDELLSYLGPPDLPTNNND 911
+ P + G P LP D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 40.0 bits (92), Expect = 0.010
Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)
Query: 725 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 767
PGAA P PP S+P P GQ + PG + P PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447
Query: 768 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 826
PGPP + + +K C G P PG PG
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500
Query: 827 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 886
L PPG S P + GQA G TG G G P G+ P L
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552
Query: 887 LPELTNPDELLSYLGPPDLP 906
P + L G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 37.0 bits (84), Expect = 0.084
Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 794
P +P YPG+ G ++ PP P L PG I + +I L
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 795 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 854
EK P P PG PG + + PPGP P R G G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412
Query: 855 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 911
P G ++ G+ G P G P PA +P P + + GPP P + D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464
Score = 34.7 bits (78), Expect = 0.42
Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 792
P + PS PG PG PP P + + GPP I Q +
Sbjct: 1332 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1388
Query: 793 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 830
LP P G PT PG PG + T L P
Sbjct: 1389 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1440
Query: 831 PGPQLHHSNPPPASRQSLGQASL 853
PGP P P S+ L
Sbjct: 1441 PGPDGLQGPPGPPGTSSVAHGFL 1463
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 58.2 bits (139), Expect = 4e-08
Identities = 79/328 (24%), Positives = 96/328 (29%), Gaps = 62/328 (18%)
Query: 62 GPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFT 121
GP G P +PG+ G +L P G++ Q G G PG PG
Sbjct: 491 GPPGQPG----LPGLPGPPGSLGFPGQKGEKG-----------QAGATGPKGLPGIPG-- 533
Query: 122 TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQELSQ 181
PG G P P T + + L
Sbjct: 534 -----APGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG 588
Query: 182 YGAMGAGQSFNSQFLQHGGPRGPSVPAG---MNPTGIG--GVMGPSGLSPLAMNPTRAAG 236
G +F + G P P +P M P G G G +G G+ +A NP
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNP----- 643
Query: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPG 296
G PG P + P Q + + PG G P PG
Sbjct: 644 -------------GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Query: 297 QPPAPS----PSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQ 352
P P P PG LP G +PGP G P G
Sbjct: 691 LPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRI---------GLEGPPGP 741
Query: 353 PGLSGPTRSIPGYPSSPLPGNPTPPMTP 380
PG GP G P LPG P PP P
Sbjct: 742 PGFPGPK----GEPGFALPGPPGPPGLP 765
Score = 55.8 bits (133), Expect = 2e-07
Identities = 89/345 (25%), Positives = 116/345 (33%), Gaps = 62/345 (17%)
Query: 57 LGNPMGPAGS---PSGSSMMPGVAGGSSALTSPQCLGQQAFA--EGGANKGYVQQGVYSR 111
L P GPAG PS PG G + G+Q +G + G+
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492
Query: 112 GGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAAL 171
G PG PG G PG LG P A A A
Sbjct: 493 PGQPGLPGLP----GPPGSLGFPGQKGEKGQ-----AGATGPKGLPGIPGAPGAPGFPGS 543
Query: 172 QEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNP 231
+ + L+ G G S G P P +P G+ G+ GP G
Sbjct: 544 KGEPGDILTFPGMKGDKGELGSP----GAPGLPGLPGTPGQDGLPGLPGPKG-------- 591
Query: 232 TRAAGMTPLYAGQRLP--QHGYPG-PPQAQPLPRQGVKRTYSEVYP-GQQYLQGGQYAPS 287
G+T + G+R P G PG P P+ G + P G++ +QG
Sbjct: 592 -EPGGIT--FKGERGPPGNPGLPGLPGNIGPMGPPG----FGPPGPVGEKGIQG------ 638
Query: 288 TAQFAPSPGQPPAPSP-SYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGG 346
A +PGQP P P PG Q+++ PG GL P + G
Sbjct: 639 ---VAGNPGQPGIPGPKGDPG----------QTITQPGKPGLPGNPGRDGD---VGLPGD 682
Query: 347 SVSYSQPGLSG--PTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSP 389
QPGL G ++ PG P LPG P P P P +P
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP 727
Score = 55.8 bits (133), Expect = 2e-07
Identities = 101/424 (23%), Positives = 135/424 (31%), Gaps = 88/424 (20%)
Query: 60 PMGPAGSP-----SGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGY 114
P+GP GSP +G+S PG G + P G G +G G
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL--KGDDGLQGQ 930
Query: 115 PGAPGFTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEK 174
PG PG TG G G GLP + + + L
Sbjct: 931 PGLPG-PTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGD 989
Query: 175 QSQELSQYGAMGAGQSFNSQFLQHGGPRG----PSVPAGMNPTGIGGVMGPSGL-SPLAM 229
Q G S GP+G P P + P G+ G +G G P +
Sbjct: 990 PGQP---------GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGV 1040
Query: 230 -NPTRAAGM-----TPLYAGQR----------LPQHGYPGPPQAQPLP----RQGVKRTY 269
P +G+ +P GQ+ + G PGP LP G+K +
Sbjct: 1041 EGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSV 1100
Query: 270 SEV-YPGQQYLQGGQYAPSTAQFAPSPGQP-------PAPSPSYPGHRLPL--------- 312
+ PG G + P F +PG P P +P PG P+
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP 1160
Query: 313 ----QQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGP--TRSIPGYP 366
++G +PGP G +P GQ N G PGLSG +PG P
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKGEP-----GQPGFGNPGPPGL--PGLSGQKGDGGLPGIP 1213
Query: 367 SSP-------------LPGNPTPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPS 413
+P PG PP P S P + + P P +P L P
Sbjct: 1214 GNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGL---PG 1270
Query: 414 GSGP 417
GP
Sbjct: 1271 PEGP 1274
Score = 51.6 bits (122), Expect = 3e-06
Identities = 94/379 (24%), Positives = 121/379 (31%), Gaps = 52/379 (13%)
Query: 62 GPAGSPS--GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPG 119
GP G P G+ +PG+ G A PQ + G N G G+PG+PG
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGA-PGPQGIP-------GCN------GTKGERGFPGSPG 138
Query: 120 FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAA-----VAAAAATATATATATVAALQEK 174
F G G PG G+P P + + T +
Sbjct: 139 FP-GLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPP 197
Query: 175 QSQEL-SQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTR 233
L G G + L GP+G G G+ GP G R
Sbjct: 198 GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK--------GEQGLQGPPGPPGQISEQKR 249
Query: 234 AAGMTPLYAGQRLP-QHGYPGPP--QAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQ 290
+ Q LP G PGPP + P P G K G+Q G + P
Sbjct: 250 PIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGE-----KGEQGEPGKRGKPGKDG 304
Query: 291 FAPSPGQPPAPS-PSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPT-------EQFNGQGA 341
PG P P P YPG ++G PGP GL E+ N
Sbjct: 305 ENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLP 364
Query: 342 SFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTP---SSSVPYMSPNQEVKSPFL 398
G PG+ GP +PG P + + G P PP P P + P
Sbjct: 365 GLPGEKGERGFPGIQGPP-GLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPG 423
Query: 399 PDLKPNLNSLHSSPSGSGP 417
D +P L P +GP
Sbjct: 424 LDGQPGAPGLPGPPGPAGP 442
Score = 48.9 bits (115), Expect = 2e-05
Identities = 98/387 (25%), Positives = 120/387 (31%), Gaps = 43/387 (11%)
Query: 9 PALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGN--------P 60
P LP P G+ +P P G + G + +G P
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGP 1162
Query: 61 MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGF 120
G G P G +PG AG GQ F G G GG PG PG
Sbjct: 1163 PGEKGKP-GQDGIPGPAGQKGEP------GQPGFGNPGPPGLPGLSGQKGDGGLPGIPGN 1215
Query: 121 T--TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATATATVAALQEKQSQE 178
G G PG G P P + A L +
Sbjct: 1216 PGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPP 1275
Query: 179 LSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMT 238
G+ N Q G P P + P G+ G G GL+ + +P
Sbjct: 1276 GLPGNGGIKGEKGNPG--QPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPG--V 1331
Query: 239 PLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQP 298
P + G + P G PG A P G+ PG L G PS
Sbjct: 1332 PGFPGMKGPS-GVPG--SAGPEGEPGLIGP-----PGPPGLPG----PSGQSIIIKGDAG 1379
Query: 299 PAPSPSYPGHR-LPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSG 357
P P PG + LP QG +PGPTG P + F+G PGL G
Sbjct: 1380 PPGIPGQPGLKGLPGPQG---PQGLPGPTG---PPGDPGRNGLPGFDGAGGRKGDPGLPG 1433
Query: 358 P--TRSIPGYPS-SPLPGNPTPPMTPS 381
TR + G P L G P PP T S
Sbjct: 1434 QPGTRGLDGPPGPDGLQGPPGPPGTSS 1460
Score = 48.1 bits (113), Expect = 4e-05
Identities = 105/401 (26%), Positives = 124/401 (30%), Gaps = 71/401 (17%)
Query: 6 PMKPALPPAPHGDGSFAYES---VPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMG 62
P KP LP P DG +P Q GS + G+G L P G
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE-PGIPGIG-------LPGPPG 713
Query: 63 PAGSPS--GSSMMPGVAG--------GSSALTSPQCLGQQAFAEGGAN--------KGYV 104
P G P G PG G G P+ G+ FA G KG +
Sbjct: 714 PKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK--GEPGFALPGPPGPPGLPGFKGAL 771
Query: 105 QQGVYSRGGYPGAPG--FTTGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATA 162
G G+PG PG TG G PG G +P V
Sbjct: 772 --GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGI 829
Query: 163 TATATVAALQEKQSQELSQYGAMGA-GQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGP 221
L ++ G G G + G P P P + P G G+ G
Sbjct: 830 PGPIGQPGLHGIPGEK----GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGK 885
Query: 222 SGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLP-RQGVKRTYSEVYPGQQYLQ 280
+G S M P PGPP +P R GV G LQ
Sbjct: 886 AGASGFPGTKGEMGMMGP------------PGPPGPLGIPGRSGVPG-----LKGDDGLQ 928
Query: 281 GGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQG 340
G P S G+P P P PG P+ + S G GL P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGP--PG---PMDPNLLGSKGEKGEPGL---PGIPGVSGP 980
Query: 341 ASFNGGSVSYSQPGLSGPTRSIPGYPSSPLP-GNPTPPMTP 380
+ G QPGLSG PG P P P GNP P P
Sbjct: 981 KGYQGLPGDPGQPGLSGQ----PGLPGPPGPKGNPGLPGQP 1017
Score = 47.8 bits (112), Expect = 5e-05
Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 52/206 (25%)
Query: 725 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQ 784
PG P PP +P P PG PG + PP PGPP
Sbjct: 816 PGIGVQGPPGPPGIPGPIGQPGLHGI---PGEKGDPGPPGLD--------VPGPP----- 859
Query: 785 SDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN----------LGAPPGPQ 834
E+ + +P P G P +PG PG ++ + PPGP
Sbjct: 860 ---------GERGSPGIPGAPGPIG---PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 835 LHHSNPPPASRQSL-------GQASL-GPTGELAFSPATGVMGPPS------MSGAGEAP 880
P + L GQ L GPTGE G+ GPP + GE
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 881 EPALDLLPELTNPDELLSYLGPPDLP 906
EP L +P ++ P G P P
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQP 993
Score = 47.4 bits (111), Expect = 6e-05
Identities = 100/408 (24%), Positives = 120/408 (29%), Gaps = 103/408 (25%)
Query: 6 PMKPALPPAPHGDGSFAY---ESVPWQQSATQPAGSLSVVTTVWGVG----NATQSQVLG 58
P +P LP P GS + + Q AT P G + G +L
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILT 552
Query: 59 NP-----MGPAGSPSGSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQGVYSRGG 113
P G GSP G+ +PG+ G P G + G KG ++G G
Sbjct: 553 FPGMKGDKGELGSP-GAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKG--ERGPPGNPG 609
Query: 114 YPGAPGFT-------------------TGYAGGPGGLGLPSHAARPSTDFTQAAAAAAVA 154
PG PG G AG PG G+P P TQ
Sbjct: 610 LPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPG 669
Query: 155 AAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTG 214
G P P +P G
Sbjct: 670 NPGRDGDV------------------------------------GLPGDPGLPGQPGLPG 693
Query: 215 IGGVMGPSGLSPLAM-NPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVY 273
I G G G+ + + P G G PGPP A P R E
Sbjct: 694 IPGSKGEPGIPGIGLPGPPGPKGFP-----------GIPGPPGAPGTP----GRIGLEGP 738
Query: 274 PGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPT 333
PG G + P A PG PP P P PG + L G PGP G P
Sbjct: 739 PGPPGFPGPKGEPGFA----LPG-PPGP-PGLPGFKGAL--GPKGDRGFPGPPG----PP 786
Query: 334 EQFNGQGASFNGGSVS-YSQPGLSGPTRSIPGYPSSPLPGNPTPPMTP 380
+ G G V QPG GP PG P + G P PP P
Sbjct: 787 GRTGLDGLPGPKGDVGPNGQPGPMGP----PGLPGIGVQGPPGPPGIP 830
Score = 46.2 bits (108), Expect = 1e-04
Identities = 58/192 (30%), Positives = 73/192 (38%), Gaps = 21/192 (10%)
Query: 724 GPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPI 781
GP P P P P +P PG GT E P +P P L + PGPP I
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPGI 151
Query: 782 SYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLG--APPGPQ--LHH 837
P S++ S LP G+ P G PG T G PPGP +
Sbjct: 152 PGMKGEPGSIIMSS-----LPGPKGNPGYPGPPGIQGLPG-PTGIPGPIGPPGPPGLMGP 205
Query: 838 SNPP--PASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDE 895
PP P + ++G GP GE G+ GPP G + +D+ E D+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKG---EQGLQGPPGPPGQISEQKRPIDV--EFQKGDQ 260
Query: 896 -LLSYLGPPDLP 906
L GPP P
Sbjct: 261 GLPGDRGPPGPP 272
Score = 43.5 bits (101), Expect = 0.001
Identities = 56/198 (28%), Positives = 65/198 (32%), Gaps = 34/198 (17%)
Query: 724 GPGAAPFAPLQP--------PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFT 775
GP P P +P P P P G+ PG + P P
Sbjct: 1137 GPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN----- 1191
Query: 776 PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQL 835
PGPP +P L+ +K LP G P PG G + PPGP
Sbjct: 1192 PGPP------GLPG--LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF--PGVQGPPGPP- 1240
Query: 836 HHSNPPPASRQSLGQAS-LGPTGELAFSPATGVMGPPSMSG----AGEAPEPALDLLPEL 890
+P PA G GP G F G GPP + G GE P LP L
Sbjct: 1241 --GSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1298
Query: 891 TNPDELLSYLGPPDLPTN 908
L GPP L N
Sbjct: 1299 PG---LKGDQGPPGLQGN 1313
Score = 43.1 bits (100), Expect = 0.001
Identities = 51/169 (30%), Positives = 58/169 (34%), Gaps = 30/169 (17%)
Query: 729 PFAPLQP--PSVPAPSDYPGQGSSFL----GPGTFPE-SFPPTTPSTPTLA--EFTPGPP 779
P P QP P +P PG L GP FP PP P TP E PGPP
Sbjct: 683 PGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Query: 780 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 839
P L LP G L P + G PG PPGP
Sbjct: 743 GFPGPKGEPGFALPGPPGPPGLPGFK---GALGPKGDRGFPG--------PPGP------ 785
Query: 840 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLP 888
P L GP G++ + G MGPP + G G P +P
Sbjct: 786 PGRTGLDGLP----GPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Score = 42.4 bits (98), Expect = 0.002
Identities = 54/184 (29%), Positives = 62/184 (33%), Gaps = 23/184 (12%)
Query: 720 IAALGPGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEF--TPG 777
I+++G P P P +P PG S PG P P L F TPG
Sbjct: 1070 ISSIGLPGLP-GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG 1128
Query: 778 PPPISYQSDIPSSL-LTSEKSTAC---LPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 833
PP S P + L E P Q P G G PG G P P
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-PAGQKGEPGQP 1187
Query: 834 QLHHSNPP--PASRQSLGQASL----------GPTGELAFSPATGVMGPPSMSGAGEAPE 881
+ PP P G L GP GE F GV GPP G +P
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG---SPG 1244
Query: 882 PALD 885
PAL+
Sbjct: 1245 PALE 1248
Score = 42.0 bits (97), Expect = 0.003
Identities = 52/193 (26%), Positives = 63/193 (32%), Gaps = 42/193 (21%)
Query: 722 ALGPGAAPFAPLQP--PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP 779
A GP P P P P P PG +F PG + +P P L PG P
Sbjct: 522 ATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF--PGMKGDKGELGSPGAPGL----PGLP 575
Query: 780 PISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN 839
Q +P L K P + G P NPG PGL
Sbjct: 576 GTPGQDGLPG--LPGPKGE---PGGITFKGERGPPGNPGLPGL----------------- 613
Query: 840 PPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSY 899
P + +G GP G + GV G P G P P D P + ++
Sbjct: 614 --PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPG---IPGPKGD-------PGQTITQ 661
Query: 900 LGPPDLPTNNNDD 912
G P LP N D
Sbjct: 662 PGKPGLPGNPGRD 674
Score = 41.6 bits (96), Expect = 0.003
Identities = 55/206 (26%), Positives = 71/206 (34%), Gaps = 28/206 (13%)
Query: 725 PGAAPFAPLQPPSVPAPSDYPGQGSSFLGPGTFPES--FPPTTPSTPTLAEFTPGPPPIS 782
PGA P+ PP P PG+ + PGT E P P P G P +
Sbjct: 868 PGAP--GPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 783 Y------QSDIPSSLLTSEKSTACLPSQMAPAGHLDPT--------HNPGTPGLHTSNLG 828
Q +P T EK + P P G +DP PG PG+ +
Sbjct: 923 GDDGLQGQPGLPGP--TGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI--PGVS 978
Query: 829 APPGPQLHHSNP--PPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGA-GEAPEPALD 885
P G Q +P P S Q GP G G++GPP + G G+ P
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQ 1038
Query: 886 LLPELTNPDELLSYLGPPDLPTNNND 911
+ P + G P LP D
Sbjct: 1039 GVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 40.0 bits (92), Expect = 0.010
Identities = 53/200 (26%), Positives = 62/200 (31%), Gaps = 33/200 (16%)
Query: 725 PGAAPFAPLQPP-----------------SVPAPSDYPGQGSSFLGPGTFPESFPPTTPS 767
PGAA P PP S+P P GQ + PG + P PS
Sbjct: 388 PGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPS 447
Query: 768 TPTLAEFTPGPPPISYQSDIPSSL-LTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 826
PGPP + + +K C G P PG PG
Sbjct: 448 DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCF--NCIGTGISGPPGQPGLPG----- 500
Query: 827 LGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDL 886
L PPG S P + GQA G TG G G P G+ P L
Sbjct: 501 LPGPPG-----SLGFPGQKGEKGQA--GATGPKGLPGIPGAPGAPGFPGSKGEPGDIL-T 552
Query: 887 LPELTNPDELLSYLGPPDLP 906
P + L G P LP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 37.0 bits (84), Expect = 0.084
Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 25/177 (14%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPP-PISYQSDIPSSLLTS 794
P +P YPG+ G ++ PP P L PG I + +I L
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPG---LVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 795 EKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLG 854
EK P P PG PG + + PPGP P R G G
Sbjct: 369 EKGERGFPGIQGP---------PGLPGPPGAAVMGPPGPPGF-----PGERGQKGDE--G 412
Query: 855 PTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNNND 911
P G ++ G+ G P G P PA +P P + + GPP P + D
Sbjct: 413 PPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGPPGSPGD 464
Score = 34.7 bits (78), Expect = 0.42
Identities = 35/143 (24%), Positives = 41/143 (28%), Gaps = 36/143 (25%)
Query: 736 PSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTP---TLAEFTPGPPPISYQSDIPSSLL 792
P + PS PG PG PP P + + GPP I Q +
Sbjct: 1335 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG--- 1391
Query: 793 TSEKSTACLPSQMAPAGHLDPTHNPGTPGLH----------------------TSNLGAP 830
LP P G PT PG PG + T L P
Sbjct: 1392 --------LPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1443
Query: 831 PGPQLHHSNPPPASRQSLGQASL 853
PGP P P S+ L
Sbjct: 1444 PGPDGLQGPPGPPGTSSVAHGFL 1466
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,801,937
Number of Sequences: 37866
Number of extensions: 3357108
Number of successful extensions: 26690
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 1301
Number of HSP's that attempted gapping in prelim test: 15217
Number of HSP's gapped (non-prelim): 9360
length of query: 920
length of database: 18,247,518
effective HSP length: 112
effective length of query: 808
effective length of database: 14,006,526
effective search space: 11317273008
effective search space used: 11317273008
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.