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Search of human proteins with 52851391
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52851391 mediator complex subunit 28 [Homo sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52851391 mediator complex subunit 28 [Homo sapiens] 358 2e-99
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 37 0.012
gi|45237195 Janus kinase and microtubule interacting protein 2 [... 35 0.026
gi|51477718 TATA box binding protein-associated factor, RNA poly... 35 0.044
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 34 0.058
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 34 0.058
gi|13699803 WAS protein family, member 3 [Homo sapiens] 34 0.076
gi|52630419 sterol regulatory element binding transcription fact... 33 0.13
gi|22547195 sterol regulatory element binding transcription fact... 33 0.13
gi|217035164 coiled-coil domain containing 27 [Homo sapiens] 33 0.13
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 33 0.13
gi|29171755 PTPRF interacting protein alpha 2 [Homo sapiens] 33 0.13
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 32 0.22
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 32 0.29
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 32 0.29
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 32 0.29
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 32 0.29
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 32 0.29
gi|38348368 hypothetical protein LOC374872 [Homo sapiens] 32 0.29
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 32 0.29
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 32 0.38
gi|71061468 centromere protein E [Homo sapiens] 31 0.49
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens] 31 0.49
gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens] 31 0.49
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens] 31 0.49
gi|209915617 G kinase anchoring protein 1 isoform b [Homo sapiens] 31 0.49
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 31 0.49
gi|24308458 Lix1 homolog (mouse) like [Homo sapiens] 31 0.49
gi|40018629 hypothetical protein LOC23325 [Homo sapiens] 31 0.49
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 31 0.64
>gi|52851391 mediator complex subunit 28 [Homo sapiens]
Length = 178
Score = 358 bits (918), Expect = 2e-99
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MAAPLGGMFSGQPPGPPQAPPGLPGQASLLQAAPGAPRPSSSTLVDELESSFEACFASLV 60
MAAPLGGMFSGQPPGPPQAPPGLPGQASLLQAAPGAPRPSSSTLVDELESSFEACFASLV
Sbjct: 1 MAAPLGGMFSGQPPGPPQAPPGLPGQASLLQAAPGAPRPSSSTLVDELESSFEACFASLV 60
Query: 61 SQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKEDVSELRN 120
SQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKEDVSELRN
Sbjct: 61 SQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKEDVSELRN 120
Query: 121 ELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADIPQGSLAYLEQASANIPAPLKPT 178
ELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADIPQGSLAYLEQASANIPAPLKPT
Sbjct: 121 ELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADIPQGSLAYLEQASANIPAPLKPT 178
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 36.6 bits (83), Expect = 0.012
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 1 MAAPLGGMFSGQPPGPPQAPPGL---PGQASLLQAAPGAPRPSSSTLVDELESSFEACFA 57
+A L F G+P P+ PG PG +L A+PGAP+P T E SF A A
Sbjct: 826 LALGLTATFPGEPGASPRLSPGPSTPPGAPTLPLASPGAPQPPPVT----PERSFSASGA 881
Query: 58 SLVSQ 62
+VS+
Sbjct: 882 QIVSR 886
>gi|45237195 Janus kinase and microtubule interacting protein 2
[Homo sapiens]
Length = 810
Score = 35.4 bits (80), Expect = 0.026
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 42 STLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQ 101
+TL + L+ F L+S+ QEE+RT V++ ++ L +R+ +C LQ+R++
Sbjct: 721 ATLYNALQQETVIKFGELLSEK-----QQEELRTAVEKLRRQMLRKSREYDCQILQERME 775
Query: 102 LSVQKPEQVIKEDVSELRNELQRK 125
L +Q+ Q I++ E + ++Q++
Sbjct: 776 L-LQQAHQRIRD--LEDKTDIQKR 796
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 34.7 bits (78), Expect = 0.044
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 69 DQEEIRTGVDQCIQKFLDIARQTECFFLQK----------RLQLSVQKPEQVIKEDVSEL 118
+ E+ + C +++L+ RQ + F++ + + +QK + ++ + ++
Sbjct: 351 EDEDKEEEEEDCSEEYLE--RQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKI 408
Query: 119 RNELQRKDALVQK--HLTKLRHWQQVLEDINVQHKK 152
+N+ QR+ L+ K +LT H+Q VLE + +Q K+
Sbjct: 409 QNKAQRQKDLIMKVENLTLKNHFQSVLEQLELQEKQ 444
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 34.3 bits (77), Expect = 0.058
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 71 EEIRTGVDQCIQKFLDIARQTECFFLQ-----KRLQLSVQKPEQVIKEDVSELRNELQRK 125
EE+R + I+ + + + F+ + KR QL + Q KE ++LR E Q +
Sbjct: 115 EELRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQ 174
Query: 126 DALVQKHLTKLRHWQQVLED 145
+A+++K + KL+ Q+++D
Sbjct: 175 EAILRKTIGKLKTELQMVQD 194
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 34.3 bits (77), Expect = 0.058
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 71 EEIRTGVDQCIQKFLDIARQTECFFLQ-----KRLQLSVQKPEQVIKEDVSELRNELQRK 125
EE+R + I+ + + + F+ + KR QL + Q KE ++LR E Q +
Sbjct: 235 EELRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQ 294
Query: 126 DALVQKHLTKLRHWQQVLED 145
+A+++K + KL+ Q+++D
Sbjct: 295 EAILRKTIGKLKTELQMVQD 314
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 33.9 bits (76), Expect = 0.076
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 13 PPGPPQAPPGLPGQASLLQAAP 34
PPGPP PPG PG S L ++P
Sbjct: 397 PPGPPPPPPGPPGPGSSLSSSP 418
>gi|52630419 sterol regulatory element binding transcription factor
1 isoform a [Homo sapiens]
Length = 1177
Score = 33.1 bits (74), Expect = 0.13
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 3 APLGGMFSGQPPGPPQAP-PGLPGQASLLQAAPGAPRPSSSTLVDEL 48
+P GG +G PPG Q P PGLP L + PG P S T V +
Sbjct: 197 SPPGGFSTGSPPGNTQQPLPGLP-----LASPPGVPPVSLHTQVQSV 238
>gi|22547195 sterol regulatory element binding transcription factor
1 isoform b [Homo sapiens]
Length = 1147
Score = 33.1 bits (74), Expect = 0.13
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 3 APLGGMFSGQPPGPPQAP-PGLPGQASLLQAAPGAPRPSSSTLVDEL 48
+P GG +G PPG Q P PGLP L + PG P S T V +
Sbjct: 167 SPPGGFSTGSPPGNTQQPLPGLP-----LASPPGVPPVSLHTQVQSV 208
>gi|217035164 coiled-coil domain containing 27 [Homo sapiens]
Length = 656
Score = 33.1 bits (74), Expect = 0.13
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 104 VQKPEQVIKEDVSELRNELQRKDALVQKHLTK--------------LRHWQQVLEDINVQ 149
++K Q++++ VSEL +L ++D ++ + TK L+ W+Q+ ED+ +
Sbjct: 501 IEKDNQLLRQQVSELERKLTKRDCVISELDTKVSQLQEQVELDQNHLQRWKQLQEDLQSK 560
Query: 150 HKKPADIPQGSLAYLEQASANI 171
+ Q + LE + + +
Sbjct: 561 KEMIQQAEQHTRVALESSQSRL 582
>gi|62945417 dystrophia myotonica-containing WD repeat motif
protein [Homo sapiens]
Length = 674
Score = 33.1 bits (74), Expect = 0.13
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 2 AAPLGGMFSGQPPGPPQAPPGLPGQASLLQAAPGAPRPSSS 42
AA G S Q P PPQ P PG AS + PGA P+SS
Sbjct: 41 AARRSGPASAQTPVPPQPPQPPPGPAS--ASGPGAAGPASS 79
>gi|29171755 PTPRF interacting protein alpha 2 [Homo sapiens]
Length = 1257
Score = 33.1 bits (74), Expect = 0.13
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 42 STLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQ 101
S+ V E+E E L+ + +N Q +IR + Q + L+KR
Sbjct: 295 SSRVGEVEQEAETARKDLIKTEEMNTKYQRDIREAMAQKEDM------EERITTLEKRY- 347
Query: 102 LSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLE 144
LS Q+ I + +L NEL K+A++++ K R Q+ LE
Sbjct: 348 LSAQRESTSIHDMNDKLENELANKEAILRQMEEKNRQLQERLE 390
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 32.3 bits (72), Expect = 0.22
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 11 GQPPGPPQAPPGLPGQASLLQAAPGAPRPSSSTLVDEL 48
G+P PPQAP P AS AAPG+P P+ T L
Sbjct: 757 GRPCPPPQAPANQPEGAS--SAAPGSPVPAPPTKASAL 792
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 32.0 bits (71), Expect = 0.29
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 2 AAPLGGMFSGQPPGPP--QAPPGLPG----QASLLQAAPGAPRP 39
A P G PPGPP Q PPG+PG + + PG P P
Sbjct: 179 AGPPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGP 222
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 32.0 bits (71), Expect = 0.29
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 2 AAPLGGMFSGQPPGPP--QAPPGLPG----QASLLQAAPGAPRP 39
A P G PPGPP Q PPG+PG + + PG P P
Sbjct: 179 AGPPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGP 222
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 32.0 bits (71), Expect = 0.29
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 6 GGMFSGQPPGPPQAP-----PGLPG-QASLLQAAPGAPRP 39
GG F PGPP P PG+PG + ++ PG P P
Sbjct: 1345 GGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 1384
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 13 PPGPPQAPPGLPGQASLLQAAPGAPRP 39
PPGPP PP PG + PG P P
Sbjct: 1401 PPGPP-GPPSFPGPHRQTISVPGPPGP 1426
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 32.0 bits (71), Expect = 0.29
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 6 GGMFSGQPPGPPQAP-----PGLPG-QASLLQAAPGAPRP 39
GG F PGPP P PG+PG + ++ PG P P
Sbjct: 930 GGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 969
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 13 PPGPPQAPPGLPGQASLLQAAPGAPRP 39
PPGPP PP PG + PG P P
Sbjct: 986 PPGPP-GPPSFPGPHRQTISVPGPPGP 1011
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 32.0 bits (71), Expect = 0.29
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 6 GGMFSGQPPGPPQAP-----PGLPG-QASLLQAAPGAPRP 39
GG F PGPP P PG+PG + ++ PG P P
Sbjct: 1110 GGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 1149
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 13 PPGPPQAPPGLPGQASLLQAAPGAPRP 39
PPGPP PP PG + PG P P
Sbjct: 1166 PPGPP-GPPSFPGPHRQTISVPGPPGP 1191
>gi|38348368 hypothetical protein LOC374872 [Homo sapiens]
Length = 473
Score = 32.0 bits (71), Expect = 0.29
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 12 QPPGPPQAP-PGLPGQASLLQAAPGAPRPSSSTLVDELE 49
QPPGPP +P P P SLL+A PS++ L LE
Sbjct: 337 QPPGPPGSPGPHAPQLGSLLRALLSLAAPSTTPLAAGLE 375
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 32.0 bits (71), Expect = 0.29
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 4 PLGGMFSGQPPGPPQAPPGLPGQASLL 30
P GG S QP P QAPPG P Q + +
Sbjct: 785 PAGGKSSQQPSTPQQAPPGQPQQGTFV 811
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 31.6 bits (70), Expect = 0.38
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 1 MAAPLGGMFSGQPPGP-----PQAPPGLPGQASLLQAAPGAP 37
+ P G + PPGP PQ PGLPGQ PGAP
Sbjct: 2219 LTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVG-ETGKPGAP 2259
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 31.2 bits (69), Expect = 0.49
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 111 IKEDVSELRNELQRK-DALVQKHLTKLRHWQQVLEDINVQHKKPADIPQ 158
I++D+ + ++ELQ+K L +K L LR V ED+N+ HKK ++ Q
Sbjct: 1957 IQKDLDKSKDELQKKIQELQKKELQLLR----VKEDVNMSHKKINEMEQ 2001
>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
Length = 2817
Score = 31.2 bits (69), Expect = 0.49
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 88 ARQTECFFLQKRLQLSVQKPEQVIK--EDVSELRNELQRKDALVQKHLTKLRHWQQVLED 145
AR+ E L++R L Q+ E+V + +D+ + R ELQ+K Q L +LR Q+ LE
Sbjct: 2611 ARERE---LREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQKQLER 2667
Query: 146 INVQHKKPAD 155
Q ++ A+
Sbjct: 2668 EQEQLRREAE 2677
>gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]
Length = 1058
Score = 31.2 bits (69), Expect = 0.49
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 88 ARQTECFFLQKRLQLSVQKPEQVIK--EDVSELRNELQRKDALVQKHLTKLRHWQQVLED 145
AR+ E L++R L Q+ E+V + +D+ + R ELQ+K Q L +LR Q+ LE
Sbjct: 852 ARERE---LREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQKQLER 908
Query: 146 INVQHKKPAD 155
Q ++ A+
Sbjct: 909 EQEQLRREAE 918
>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
Length = 2813
Score = 31.2 bits (69), Expect = 0.49
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 88 ARQTECFFLQKRLQLSVQKPEQVIK--EDVSELRNELQRKDALVQKHLTKLRHWQQVLED 145
AR+ E L++R L Q+ E+V + +D+ + R ELQ+K Q L +LR Q+ LE
Sbjct: 2607 ARERE---LREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQKQLER 2663
Query: 146 INVQHKKPAD 155
Q ++ A+
Sbjct: 2664 EQEQLRREAE 2673
>gi|209915617 G kinase anchoring protein 1 isoform b [Homo sapiens]
Length = 315
Score = 31.2 bits (69), Expect = 0.49
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 105 QKPEQVIKED--VSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQH 150
+K E+V+ +D + L+ EL+RKDA +QK + W+ +++ ++
Sbjct: 192 KKTEEVVLKDGRIERLKLELERKDAEIQKLKNVITQWEAKYKEVKARN 239
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 31.2 bits (69), Expect = 0.49
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 13 PPGPPQAPPGLPGQASLLQAAPG 35
PPGP +APPG P + +++PG
Sbjct: 618 PPGPARAPPGQPAEPDAPRSSPG 640
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 13 PPGPPQAPPGLPGQASLLQAAPGAP 37
PP P APPG PG A+ +P AP
Sbjct: 713 PPRRPAAPPGPPGPAAPPAPSPAAP 737
>gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]
Length = 337
Score = 31.2 bits (69), Expect = 0.49
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 10 SGQPPGPPQAPPGLPGQASLLQAAPGAPRP 39
+G PP PP PP P LL APG P P
Sbjct: 40 AGPPPAPP--PPAPPPPPLLLSGAPGLPLP 67
>gi|40018629 hypothetical protein LOC23325 [Homo sapiens]
Length = 1173
Score = 31.2 bits (69), Expect = 0.49
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 71 EEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPE----QVIKEDVSELRNELQRKD 126
+E+ V +C + +++ Q ++ ++ + + Q + E + EL L D
Sbjct: 145 QELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIETTGVHFQTMYEHLGELLTVLLTLD 204
Query: 127 ALVQKHLTKLRHWQQVLEDINVQHKKPA 154
++ H+T HW + H P+
Sbjct: 205 EIIDNHITLKDHWTMYKRLLKSVHHNPS 232
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 30.8 bits (68), Expect = 0.64
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 10 SGQPPGPPQAPPGLPGQASLLQAAPGAPRPSSS 42
SGQPP PP P LP Q P P PSSS
Sbjct: 486 SGQPPPPPSGP--LPPWQQQQQQPPPPPPPSSS 516
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,390,189
Number of Sequences: 37866
Number of extensions: 451850
Number of successful extensions: 4928
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 4070
Number of HSP's gapped (non-prelim): 1114
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.