Guide to the Human Genome
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Name: SREBF1 Sequence: fasta or formatted (1147aa) NCBI GI: 22547195
Description:

sterol regulatory element binding transcription factor 1 isoform b

Referenced in:

Myc and Related Functions
WD Repeat Proteins

Other entries for this name:
alt prot [1177aa] sterol regulatory element binding transcription factor 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2        129           3
 C cysteine            1.6         18           1
 D aspartate           4.4         50           1
 E glutamate           3.8         44           2
 F phenylalanine       2.6         30           2
 G glycine             7.4         85           3
 H histidine           2.4         27           1
 I isoleucine          1.7         20           2
 K lysine              3.0         34           1
 L leucine            14.2        163           3
 M methionine          1.3         15           1
 N asparagine          1.7         20           2
 P proline             9.6        110           3
 Q glutamine           4.9         56           3
 R arginine            5.8         66           3
 S serine             10.2        117           3
 T threonine           5.8         67           3
 V valine              5.8         66           2
 W tryptophan          1.3         15           2
 Y tyrosine            1.3         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterol regulatory element binding transcription fact... 
SREBF1                0.993   sterol regulatory element binding transcription fact...
SREBF2                0.366   sterol regulatory element-binding transcription fact...
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
LOC100134663          0.019   PREDICTED: hypothetical protein, partial 
MUC2                  0.019   mucin 2 precursor 
YLPM1                 0.019   YLP motif containing 1 
BAT2D1                0.018   HBxAg transactivated protein 2 
MLXIPL                0.018   Williams Beuren syndrome chromosome region 14 isofor...
MUC7                  0.018   mucin 7, secreted precursor 
MUC7                  0.018   mucin 7, secreted precursor 
MUC7                  0.018   mucin 7, secreted precursor 
DIAPH1                0.017   diaphanous 1 isoform 2 
DIAPH1                0.017   diaphanous 1 isoform 1 
MLXIPL                0.017   Williams Beuren syndrome chromosome region 14 isofor...
FMN2                  0.017   formin 2 
WASF2                 0.017   WAS protein family, member 2 
LOC100294420          0.016   PREDICTED: similar to mucin 2 
SRCAP                 0.016   Snf2-related CBP activator protein 
TFE3                  0.016   transcription factor E3 
CPSF6                 0.015   cleavage and polyadenylation specific factor 6, 68 ...
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
SMARCA4               0.015   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.015   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.015   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.015   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.015   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.015   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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