Guide to the Human Genome
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Name: FAM184A Sequence: fasta or formatted (971aa) NCBI GI: 154350244
Description:

hypothetical protein LOC79632 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1140aa} hypothetical protein LOC79632 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         65           3
 C cysteine            0.4          4           1
 D aspartate           4.4         43           2
 E glutamate          15.0        146           3
 F phenylalanine       2.3         22           1
 G glycine             2.3         22           2
 H histidine           3.6         35           2
 I isoleucine          3.8         37           2
 K lysine              9.4         91           3
 L leucine            13.0        126           2
 M methionine          2.5         24           1
 N asparagine          4.1         40           2
 P proline             2.0         19           2
 Q glutamine           9.9         96           3
 R arginine            6.1         59           2
 S serine              6.5         63           2
 T threonine           3.4         33           1
 V valine              3.5         34           1
 W tryptophan          0.4          4           1
 Y tyrosine            0.8          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79632 isoform 2 
FAM184A               0.988   hypothetical protein LOC79632 isoform 1 
FAM184B               0.130   hypothetical protein LOC27146 
CENPE                 0.073   centromere protein E 
PLEC1                 0.071   plectin 1 isoform 11 
PLEC1                 0.071   plectin 1 isoform 10 
PLEC1                 0.071   plectin 1 isoform 8 
PLEC1                 0.071   plectin 1 isoform 7 
PLEC1                 0.071   plectin 1 isoform 6 
PLEC1                 0.071   plectin 1 isoform 3 
PLEC1                 0.071   plectin 1 isoform 2 
PLEC1                 0.071   plectin 1 isoform 1 
CLIP1                 0.070   restin isoform b 
MYH9                  0.068   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.065   myosin, heavy polypeptide 10, non-muscle 
GOLGA4                0.065   golgi autoantigen, golgin subfamily a, 4 
EEA1                  0.065   early endosome antigen 1, 162kD 
CEP110                0.064   centrosomal protein 110kDa 
CLIP1                 0.063   restin isoform a 
GOLGB1                0.063   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH13                 0.062   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH11                 0.062   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.062   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.062   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.062   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH7                  0.060   myosin, heavy chain 7, cardiac muscle, beta 
MYH3                  0.060   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CEP250                0.060   centrosomal protein 2 
DSP                   0.059   desmoplakin isoform I 
MYH6                  0.058   myosin heavy chain 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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