Guide to the Human Genome
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Name: JAKMIP2 Sequence: fasta or formatted (810aa) NCBI GI: 45237195
Description:

Janus kinase and microtubule interacting protein 2

Referenced in:

Coiled-Coil Proteins
GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         56           2
 C cysteine            1.0          8           1
 D aspartate           6.3         51           3
 E glutamate          13.7        111           3
 F phenylalanine       1.6         13           1
 G glycine             2.7         22           2
 H histidine           1.9         15           1
 I isoleucine          5.8         47           2
 K lysine              9.9         80           2
 L leucine            12.2         99           2
 M methionine          2.2         18           2
 N asparagine          3.2         26           1
 P proline             2.0         16           2
 Q glutamine           8.4         68           2
 R arginine            8.5         69           3
 S serine              5.1         41           2
 T threonine           3.8         31           1
 V valine              3.1         25           1
 W tryptophan          0.4          3           1
 Y tyrosine            1.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Janus kinase and microtubule interacting protein 2 [... 
JAKMIP1               0.645   janus kinase and microtubule interacting protein 1 ...
JAKMIP3               0.595   Janus kinase and microtubule interacting protein 3 ...
JAKMIP1               0.458   janus kinase and microtubule interacting protein 1 i...
CCDC88A               0.053   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.053   coiled-coil domain containing 88A isoform 1 
CEP250                0.051   centrosomal protein 2 
NUMA1                 0.049   nuclear mitotic apparatus protein 1 
GOLGA4                0.049   golgi autoantigen, golgin subfamily a, 4 
EEA1                  0.049   early endosome antigen 1, 162kD 
TCHH                  0.049   trichohyalin 
MYH4                  0.049   myosin, heavy polypeptide 4, skeletal muscle 
MYH11                 0.048   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.048   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.048   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.048   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH1                  0.048   myosin, heavy chain 1, skeletal muscle, adult [Homo...
CCDC18                0.048   sarcoma antigen NY-SAR-41 
CENPE                 0.047   centromere protein E 
MYH8                  0.046   myosin, heavy chain 8, skeletal muscle, perinatal [...
GOLGB1                0.045   golgi autoantigen, golgin subfamily b, macrogolgin ...
PLEC1                 0.044   plectin 1 isoform 11 
PLEC1                 0.044   plectin 1 isoform 10 
PLEC1                 0.044   plectin 1 isoform 8 
PLEC1                 0.044   plectin 1 isoform 7 
PLEC1                 0.044   plectin 1 isoform 6 
PLEC1                 0.044   plectin 1 isoform 3 
PLEC1                 0.044   plectin 1 isoform 2 
PLEC1                 0.044   plectin 1 isoform 1 
MYH2                  0.044   myosin, heavy chain 2, skeletal muscle, adult [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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