Guide to the Human Genome
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Name: AKAP13 Sequence: fasta or formatted (2817aa) NCBI GI: 31563330
Description:

A-kinase anchor protein 13 isoform 1

Referenced in:

Cyclic Nucleotides
Rho and Rac

Other entries for this name:
alt prot [2813aa] A-kinase anchor protein 13 isoform 2
alt prot [1058aa] A-kinase anchor protein 13 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7        188           3
 C cysteine            1.9         54           2
 D aspartate           6.2        174           2
 E glutamate           9.3        262           4
 F phenylalanine       2.6         74           2
 G glycine             6.3        178           2
 H histidine           2.3         65           2
 I isoleucine          3.3         93           2
 K lysine              6.8        191           4
 L leucine             8.9        252           4
 M methionine          2.2         61           2
 N asparagine          3.4         97           1
 P proline             5.7        161           3
 Q glutamine           5.4        153           3
 R arginine            4.4        123           3
 S serine             11.5        323           4
 T threonine           5.6        159           2
 V valine              5.9        165           2
 W tryptophan          0.5         13           1
 Y tyrosine            1.1         31           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   A-kinase anchor protein 13 isoform 1 
AKAP13                0.990   A-kinase anchor protein 13 isoform 2 
AKAP13                0.367   A-kinase anchor protein 13 isoform 3 
ARHGEF18              0.103   Rho/Rac guanine nucleotide exchange factor 18 isofo...
ARHGEF18              0.103   Rho/Rac guanine nucleotide exchange factor 18 isofor...
RGNEF                 0.101   Rho-guanine nucleotide exchange factor 
ARHGEF2               0.101   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.101   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.099   Rho/Rac guanine nucleotide exchange factor 2 isoofor...
ARHGEF1               0.030   Rho guanine nucleotide exchange factor 1 isoform 1 [...
ARHGEF1               0.030   Rho guanine nucleotide exchange factor 1 isoform 3 [...
ARHGEF1               0.030   Rho guanine nucleotide exchange factor 1 isoform 2 [...
ARHGEF11              0.028   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.028   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
ARHGEF12              0.026   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
ARHGEF3               0.010   Rho guanine nucleotide exchange factor 3 isoform 2 ...
ARHGEF3               0.010   Rho guanine nucleotide exchange factor 3 isoform 1 ...
ARHGEF3               0.010   Rho guanine nucleotide exchange factor 3 isoform 3 [H...
PLEKHG5               0.010   pleckstrin homology domain containing family G membe...
PLEKHG5               0.010   pleckstrin homology domain containing family G memb...
PLEKHG5               0.010   pleckstrin homology domain containing family G memb...
PLEKHG5               0.010   pleckstrin homology domain containing family G memb...
PLEKHG5               0.010   pleckstrin homology domain containing family G memb...
NET1                  0.010   neuroepithelial cell transforming gene 1 isoform 1 ...
NET1                  0.010   neuroepithelial cell transforming gene 1 isoform 2 [...
FGD4                  0.009   FYVE, RhoGEF and PH domain containing 4 
ITSN1                 0.009   intersectin 1 isoform ITSN-l 
ITSN2                 0.009   intersectin 2 isoform 3 
ITSN2                 0.009   intersectin 2 isoform 1 
DSPP                  0.008   dentin sialophosphoprotein preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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