Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AKAP13 Sequence: fasta or formatted (1058aa) NCBI GI: 21493031
Description:

A-kinase anchor protein 13 isoform 3

Referenced in:

Cyclic Nucleotides
Rho and Rac

Other entries for this name:
alt prot [2813aa] A-kinase anchor protein 13 isoform 2
alt prot [2817aa] A-kinase anchor protein 13 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         48           2
 C cysteine            1.3         14           1
 D aspartate           5.0         53           2
 E glutamate          10.2        108           3
 F phenylalanine       3.2         34           2
 G glycine             4.9         52           2
 H histidine           1.7         18           2
 I isoleucine          4.4         47           2
 K lysine             10.3        109           4
 L leucine             9.5        100           4
 M methionine          2.4         25           2
 N asparagine          3.3         35           1
 P proline             3.7         39           2
 Q glutamine           7.0         74           2
 R arginine            6.0         64           3
 S serine             10.3        109           3
 T threonine           4.4         47           2
 V valine              6.0         63           2
 W tryptophan          0.4          4           1
 Y tyrosine            1.4         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   A-kinase anchor protein 13 isoform 3 
AKAP13                1.000   A-kinase anchor protein 13 isoform 1 
AKAP13                1.000   A-kinase anchor protein 13 isoform 2 
ARHGEF18              0.281   Rho/Rac guanine nucleotide exchange factor 18 isofo...
ARHGEF18              0.281   Rho/Rac guanine nucleotide exchange factor 18 isofor...
ARHGEF2               0.273   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.273   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.270   Rho/Rac guanine nucleotide exchange factor 2 isoofor...
RGNEF                 0.268   Rho-guanine nucleotide exchange factor 
ARHGEF1               0.081   Rho guanine nucleotide exchange factor 1 isoform 1 [...
ARHGEF1               0.081   Rho guanine nucleotide exchange factor 1 isoform 3 [...
ARHGEF1               0.081   Rho guanine nucleotide exchange factor 1 isoform 2 [...
ARHGEF11              0.075   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.075   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
ARHGEF12              0.071   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
ARHGEF3               0.028   Rho guanine nucleotide exchange factor 3 isoform 2 ...
ARHGEF3               0.028   Rho guanine nucleotide exchange factor 3 isoform 1 ...
ARHGEF3               0.028   Rho guanine nucleotide exchange factor 3 isoform 3 [H...
PLEKHG5               0.027   pleckstrin homology domain containing family G membe...
PLEKHG5               0.027   pleckstrin homology domain containing family G memb...
PLEKHG5               0.027   pleckstrin homology domain containing family G memb...
PLEKHG5               0.027   pleckstrin homology domain containing family G memb...
PLEKHG5               0.027   pleckstrin homology domain containing family G memb...
NET1                  0.026   neuroepithelial cell transforming gene 1 isoform 1 ...
NET1                  0.026   neuroepithelial cell transforming gene 1 isoform 2 [...
FGD4                  0.026   FYVE, RhoGEF and PH domain containing 4 
ITSN1                 0.025   intersectin 1 isoform ITSN-l 
ITSN2                 0.025   intersectin 2 isoform 3 
ITSN2                 0.025   intersectin 2 isoform 1 
TCHH                  0.022   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press