Guide to the Human Genome
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Name: PPFIA2 Sequence: fasta or formatted (1257aa) NCBI GI: 29171755
Description:

PTPRF interacting protein alpha 2

Referenced in:

Protein Tyrosine Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         86           3
 C cysteine            0.7          9           1
 D aspartate           4.9         61           4
 E glutamate          11.9        149           3
 F phenylalanine       1.3         16           1
 G glycine             4.5         56           2
 H histidine           2.7         34           2
 I isoleucine          3.8         48           1
 K lysine              5.6         70           3
 L leucine            11.9        149           3
 M methionine          3.4         43           2
 N asparagine          3.5         44           2
 P proline             3.6         45           3
 Q glutamine           5.3         66           2
 R arginine            8.9        112           3
 S serine              9.4        118           3
 T threonine           5.5         69           3
 V valine              4.2         53           2
 W tryptophan          1.0         12           1
 Y tyrosine            1.4         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PTPRF interacting protein alpha 2 
PPFIA1                0.634   PTPRF interacting protein alpha 1 isoform b 
PPFIA1                0.626   PTPRF interacting protein alpha 1 isoform a 
PPFIA3                0.545   PTPRF interacting protein alpha 3 
PPFIA4                0.358   protein tyrosine phosphatase, receptor type, f polyp...
KIAA1026              0.063   kazrin isoform E 
PPFIBP1               0.054   PTPRF interacting protein binding protein 1 isoform ...
PPFIBP2               0.051   PTPRF interacting protein, binding protein 2 (lipri...
MYH10                 0.035   myosin, heavy polypeptide 10, non-muscle 
AKAP9                 0.032   A-kinase anchor protein 9 isoform 3 
GOLGA4                0.032   golgi autoantigen, golgin subfamily a, 4 
CGNL1                 0.032   cingulin-like 1 
MYH9                  0.031   myosin, heavy polypeptide 9, non-muscle 
AKAP9                 0.031   A-kinase anchor protein 9 isoform 2 
LOC440243             0.031   PREDICTED: Putative golgin subfamily A member 6-lik...
CGN                   0.031   cingulin 
CLIP1                 0.029   restin isoform b 
CLIP1                 0.029   restin isoform a 
MYO18A                0.029   myosin 18A isoform b 
MYO18A                0.029   myosin 18A isoform a 
MYH14                 0.029   myosin, heavy chain 14 isoform 1 
MYH14                 0.029   myosin, heavy chain 14 isoform 2 
MYH14                 0.029   myosin, heavy chain 14 isoform 3 
MYH13                 0.029   myosin, heavy polypeptide 13, skeletal muscle [Homo...
EEA1                  0.029   early endosome antigen 1, 162kD 
NUMA1                 0.029   nuclear mitotic apparatus protein 1 
LOC100133758          0.029   PREDICTED: hypothetical protein, partial 
TMF1                  0.028   TATA element modulatory factor 1 
MYH7B                 0.028   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
TCHH                  0.028   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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