Guide to the Human Genome
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Name: CCL25 Sequence: fasta or formatted (150aa) NCBI GI: 22538796
Description:

small inducible cytokine A25 precursor

Referenced in:

Chemokines and Their Receptors
T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         16           2
 C cysteine            3.3          5           2
 D aspartate           1.3          2           1
 E glutamate           2.0          3           1
 F phenylalanine       4.0          6           1
 G glycine             6.0          9           1
 H histidine           4.0          6           2
 I isoleucine          3.3          5           1
 K lysine              7.3         11           2
 L leucine            11.3         17           2
 M methionine          1.3          2           1
 N asparagine          6.0          9           1
 P proline             4.7          7           1
 Q glutamine           3.3          5           1
 R arginine            6.0          9           2
 S serine             10.7         16           3
 T threonine           2.7          4           1
 V valine              6.7         10           1
 W tryptophan          2.7          4           1
 Y tyrosine            2.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A25 precursor 
CCL26                 0.066   chemokine (C-C motif) ligand 26 precursor 
CCL21                 0.059   small inducible cytokine A21 precursor 
CCL28                 0.059   chemokine (C-C motif) ligand 28 precursor 
CCL24                 0.042   small inducible cytokine A24 precursor 
CCL5                  0.035   small inducible cytokine A5 precursor 
CCL23                 0.035   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL23                 0.035   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL16                 0.035   small inducible cytokine A16 precursor 
CCL11                 0.028   small inducible cytokine A11 precursor 
CCL27                 0.028   small inducible cytokine A27 precursor 
CCL3                  0.024   chemokine (C-C motif) ligand 3 
CCL3L1                0.024   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL18                 0.024   small inducible cytokine A18 precursor 
CCL3L3                0.024   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL20                 0.021   chemokine (C-C motif) ligand 20 isoform 2 
CCL20                 0.021   chemokine (C-C motif) ligand 20 isoform 1 
CCL8                  0.017   small inducible cytokine A8 precursor 
CX3CL1                0.014   chemokine (C-X3-C motif) ligand 1 
GTF2IRD1              0.010   GTF2I repeat domain containing 1 isoform 1 
GTF2IRD1              0.010   GTF2I repeat domain containing 1 isoform 2 
CCL14                 0.010   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL14                 0.010   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CHGA                  0.010   chromogranin A precursor 
SRP68                 0.007   signal recognition particle 68kDa 
WWC1                  0.007   WW and C2 domain containing 1 isoform 3 
WWC1                  0.007   WW and C2 domain containing 1 isoform 2 
WWC1                  0.007   WW and C2 domain containing 1 isoform 1 
USP37                 0.007   ubiquitin specific peptidase 37 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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