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Search of human proteins with 13399298
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
precursor [Homo sapiens]
(213 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p... 441 e-124
gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens] 283 6e-77
gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo ... 210 8e-55
gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b p... 144 4e-35
gi|239752604 PREDICTED: similar to immunoglobulin lambda-like po... 66 3e-11
gi|169218140 PREDICTED: similar to major histocompatibility comp... 57 1e-08
gi|239740861 PREDICTED: similar to major histocompatibility comp... 57 1e-08
gi|239513953 PREDICTED: similar to major histocompatibility comp... 57 1e-08
gi|18426975 major histocompatibility complex, class II, DQ alpha... 55 4e-08
gi|17986005 major histocompatibility complex, class II, DR beta ... 55 6e-08
gi|169217612 PREDICTED: similar to major histocompatibility comp... 55 6e-08
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens] 55 6e-08
gi|239740855 PREDICTED: similar to major histocompatibility comp... 55 6e-08
gi|239740853 PREDICTED: similar to major histocompatibility comp... 55 6e-08
gi|239740747 PREDICTED: similar to major histocompatibility comp... 55 6e-08
gi|239740697 PREDICTED: similar to major histocompatibility comp... 55 6e-08
gi|113430811 PREDICTED: similar to major histocompatibility comp... 54 8e-08
gi|169217452 PREDICTED: similar to HLA class II histocompatibili... 54 8e-08
gi|239750731 PREDICTED: hypothetical protein XP_002347518, parti... 54 8e-08
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa... 54 8e-08
gi|18641375 major histocompatibility complex, class II, DR beta ... 54 1e-07
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 53 2e-07
gi|4504401 major histocompatibility complex, class II, DO alpha ... 53 2e-07
gi|11095447 major histocompatibility complex, class II, DQ alpha... 52 3e-07
gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 52 5e-07
gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 52 5e-07
gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 52 5e-07
gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 52 5e-07
gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 52 5e-07
gi|24797074 major histocompatibility complex, class II, DP alpha... 51 6e-07
>gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
precursor [Homo sapiens]
Length = 213
Score = 441 bits (1135), Expect = e-124
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR 60
MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
Sbjct: 1 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR 60
Query: 61 SSLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFP 120
SSLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFP
Sbjct: 61 SSLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFP 120
Query: 121 PSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLS 180
PSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLS
Sbjct: 121 PSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLS 180
Query: 181 LTPEQWRSRRSYSCQVMHEGSTVEKTVAPAECS 213
LTPEQWRSRRSYSCQVMHEGSTVEKTVAPAECS
Sbjct: 181 LTPEQWRSRRSYSCQVMHEGSTVEKTVAPAECS 213
>gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens]
Length = 224
Score = 283 bits (725), Expect = 6e-77
Identities = 137/145 (94%), Positives = 138/145 (95%)
Query: 69 RFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQA 128
RFLLQRGSWTGP CWPRGFQSKHNSV HVFGSGTQLTVL QPKATPSVTLF PSSEELQA
Sbjct: 80 RFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQA 139
Query: 129 NKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRS 188
NKATLVCLMNDFY GILTVTWKADGTPITQGVEMTTPSKQSN+KY ASSYLSLTPEQWRS
Sbjct: 140 NKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRS 199
Query: 189 RRSYSCQVMHEGSTVEKTVAPAECS 213
RRSYSCQVMHEGST EKTVAPAECS
Sbjct: 200 RRSYSCQVMHEGSTAEKTVAPAECS 224
>gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo
sapiens]
Length = 264
Score = 210 bits (534), Expect = 8e-55
Identities = 103/138 (74%), Positives = 110/138 (79%), Gaps = 13/138 (9%)
Query: 76 SWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVC 135
S GP CW VFG GT+LTVL QPKA PSVTLFPPSSEELQANKATLVC
Sbjct: 140 SLNGPTCW-------------VFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVC 186
Query: 136 LMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQ 195
L++DFYPG +TV WKAD +P+ GVE TTPSKQSNNKYAASSYLSLTPEQW+S RSYSCQ
Sbjct: 187 LISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQ 246
Query: 196 VMHEGSTVEKTVAPAECS 213
V HEGSTVEKTVAP ECS
Sbjct: 247 VTHEGSTVEKTVAPTECS 264
>gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b
precursor [Homo sapiens]
Length = 84
Score = 144 bits (364), Expect = 4e-35
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR 60
MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
Sbjct: 1 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR 60
Query: 61 SSLRSRWGR 69
SSLRSRWGR
Sbjct: 61 SSLRSRWGR 69
>gi|239752604 PREDICTED: similar to immunoglobulin lambda-like
polypeptide 1 [Homo sapiens]
Length = 490
Score = 65.9 bits (159), Expect = 3e-11
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 109 QPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQ 168
QP+ P V PPS EE+ N+ +L CL+ FYP + V W+++G P + T P
Sbjct: 385 QPRE-PQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQP-ENNYKTTPPMLD 442
Query: 169 SNNKYAASSYLSLTPEQWRSRRSYSCQVMHE 199
S+ + S L++ +W+ +SC VMHE
Sbjct: 443 SDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 473
Score = 56.2 bits (134), Expect = 2e-08
Identities = 62/231 (26%), Positives = 93/231 (40%), Gaps = 29/231 (12%)
Query: 2 RPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRS 61
R G+ GL G G + W G A L + S+ + L APG S+ S
Sbjct: 46 RASEGEQGLVGAGRAGGS---PWSSGDQGRAATGEQGLVGSRRSRGQPLELRAPGQSTLS 102
Query: 62 SLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTH---------VFGSGTQL-------- 104
L WGR + RC P + +H ++ QL
Sbjct: 103 WL---WGREWAKVRQVAPARCTPNAREPRHWTLPGPSWIDKNRGASAPWAQLCPTPRSHG 159
Query: 105 -TVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMT 163
T L+ PSV P S + A L CL+ D++P +TV+W + +T GV
Sbjct: 160 TTSLAASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGA--LTSGVHTF 217
Query: 164 TPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGST--VEKTVAPAEC 212
QS+ Y+ SS +++T + ++Y+C V H+ S V+KTV C
Sbjct: 218 PAVLQSSGLYSLSSVVTVTSSNF-GTQTYTCNVDHKPSNTKVDKTVERKCC 267
Score = 40.8 bits (94), Expect = 9e-04
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 110 PKATPSVTLFPPSSEELQANKAT--LVCLMNDFYPGILTV--TWKADGTPITQGVEMTTP 165
P A PSV LFPP ++ T + C++ D V W DG + +
Sbjct: 277 PVAGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVQFNWYVDGMEV-HNAKTKPR 335
Query: 166 SKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEG--STVEKTVA 208
+Q N+ + S L++ + W + + Y C+V ++G + +EKT++
Sbjct: 336 EEQFNSTFRVVSVLTVVHQDWLNGKEYKCKVSNKGLPAPIEKTIS 380
>gi|169218140 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1, partial [Homo sapiens]
Length = 153
Score = 57.0 bits (136), Expect = 1e-08
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L L+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 11 PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 69
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+L P + SY C+V H G
Sbjct: 70 FKISYLTLLPS---AEESYDCKVEHWG 93
>gi|239740861 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 57.0 bits (136), Expect = 1e-08
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L L+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 112 PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+L P + SY C+V H G
Sbjct: 171 FKISYLTLLPS---AEESYDCKVEHWG 194
>gi|239513953 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 57.0 bits (136), Expect = 1e-08
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L L+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 112 PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+L P + SY C+V H G
Sbjct: 171 FKISYLTLLPS---AEESYDCKVEHWG 194
>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
precursor [Homo sapiens]
Length = 255
Score = 55.1 bits (131), Expect = 4e-08
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L TL+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSF 171
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+ P + Y C+V H G
Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195
>gi|17986005 major histocompatibility complex, class II, DR beta 3
precursor [Homo sapiens]
Length = 266
Score = 54.7 bits (130), Expect = 6e-08
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 92 NSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKA 151
N H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W
Sbjct: 106 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 162
Query: 152 DGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTV 207
+G GV T + + + L P RS Y+CQV H T TV
Sbjct: 163 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSALTV 215
>gi|169217612 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
Length = 254
Score = 54.7 bits (130), Expect = 6e-08
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L TL+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+ P + Y C+V H G
Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194
>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
Length = 255
Score = 54.7 bits (130), Expect = 6e-08
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L TL+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+ P + Y C+V H G
Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195
>gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 54.7 bits (130), Expect = 6e-08
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 92 NSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKA 151
N H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W
Sbjct: 107 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 163
Query: 152 DGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTV 207
+G GV T + + + L P RS Y+CQV H T TV
Sbjct: 164 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 216
>gi|239740853 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 54.7 bits (130), Expect = 6e-08
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 92 NSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKA 151
N H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W
Sbjct: 106 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 162
Query: 152 DGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTV 207
+G GV T + + + L P RS Y+CQV H T TV
Sbjct: 163 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215
>gi|239740747 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 54.7 bits (130), Expect = 6e-08
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L TL+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+ P + Y C+V H G
Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194
>gi|239740697 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 54.7 bits (130), Expect = 6e-08
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L TL+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+ P + Y C+V H G
Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194
>gi|113430811 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 255
Score = 54.3 bits (129), Expect = 8e-08
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L TL+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+ P Y C+V H G
Sbjct: 172 FKISYLTFLPS---DDEIYDCKVEHWG 195
>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-4 beta chain, partial [Homo sapiens]
Length = 223
Score = 54.3 bits (129), Expect = 8e-08
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 96 HVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTP 155
H +G G TV Q + P VT++P ++ LQ + LVC +N FYPG + V W +G
Sbjct: 122 HNYGVGESFTV--QRRVYPEVTVYPAKTQPLQHHNL-LVCSVNGFYPGSIEVRWFRNGQE 178
Query: 156 ITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGST 202
GV T + + + L P RS Y+CQV H T
Sbjct: 179 EKTGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSLT 222
>gi|239750731 PREDICTED: hypothetical protein XP_002347518, partial
[Homo sapiens]
Length = 214
Score = 54.3 bits (129), Expect = 8e-08
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 5/157 (3%)
Query: 58 SSRSSLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTHVF---GSGTQLTVLSQPKATP 114
S+R + R G + G R W G ++ VTH T S P+A P
Sbjct: 52 STRKEEKQRNGTLTVTSTLPVGTRDWIEG-ETYQCRVTHPHLPRALVRSTTKTSGPRAAP 110
Query: 115 SVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTT-PSKQSNNKY 173
V F +K TL CL+ +F P ++V W + + TT P K + +
Sbjct: 111 EVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGF 170
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTVAPA 210
S L +T +W + + C+ +HE ++ +TV A
Sbjct: 171 FIFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRA 207
>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 255
Score = 54.3 bits (129), Expect = 8e-08
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F S L TL+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+ P Y C+V H G
Sbjct: 172 FKISYLTFLPS---DDEIYDCKVEHWG 195
>gi|18641375 major histocompatibility complex, class II, DR beta 5
precursor [Homo sapiens]
Length = 266
Score = 53.5 bits (127), Expect = 1e-07
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 96 HVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTP 155
H +G G TV Q + P VT++P ++ LQ + LVC +N FYPG + V W +
Sbjct: 110 HNYGVGESFTV--QRRVEPKVTVYPARTQTLQHHNL-LVCSVNGFYPGSIEVRWFRNSQE 166
Query: 156 ITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTV 207
GV T + + + L P RS Y+CQV H T TV
Sbjct: 167 EKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215
>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
Length = 266
Score = 53.1 bits (126), Expect = 2e-07
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 96 HVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTP 155
H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W +G
Sbjct: 110 HNYGVGESFTV--QRRVHPKVTVYPSKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQE 166
Query: 156 ITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTV 207
GV T + + L P RS Y+CQV H T TV
Sbjct: 167 EKTGVVSTGLIHNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215
>gi|4504401 major histocompatibility complex, class II, DO alpha
precursor [Homo sapiens]
Length = 250
Score = 53.1 bits (126), Expect = 2e-07
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+ P S EL L+C++++ +P ++ +TW +G +T+GV T+ Q ++ +
Sbjct: 113 PRVTVLPKSRVEL-GQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLF 171
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
YL P + Y CQV H G
Sbjct: 172 RKFHYLPFVPS---AEDVYDCQVEHWG 195
>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
[Homo sapiens]
Length = 255
Score = 52.4 bits (124), Expect = 3e-07
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+F L TL+CL+++ +P ++ +TW ++G +T+GV T+ +S++ +
Sbjct: 113 PEVTVFSKFPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
SYL+ P + Y C+V H G
Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195
>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-9 beta chain [Homo sapiens]
Length = 266
Score = 51.6 bits (122), Expect = 5e-07
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 96 HVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTP 155
H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W +G
Sbjct: 110 HNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQE 166
Query: 156 ITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMH 198
GV T + + + L P RS Y+CQV H
Sbjct: 167 EKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEH 206
>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 51.6 bits (122), Expect = 5e-07
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 96 HVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTP 155
H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W +G
Sbjct: 110 HNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQE 166
Query: 156 ITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMH 198
GV T + + + L P RS Y+CQV H
Sbjct: 167 EKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEH 206
>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 51.6 bits (122), Expect = 5e-07
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 96 HVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTP 155
H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W +G
Sbjct: 108 HNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQE 164
Query: 156 ITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMH 198
GV T + + + L P RS Y+CQV H
Sbjct: 165 EKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEH 204
>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 51.6 bits (122), Expect = 5e-07
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 96 HVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTP 155
H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W +G
Sbjct: 110 HNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQE 166
Query: 156 ITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMH 198
GV T + + + L P RS Y+CQV H
Sbjct: 167 EKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEH 206
>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 51.6 bits (122), Expect = 5e-07
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 96 HVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTP 155
H +G G TV Q + P VT++P ++ LQ + LVC ++ FYPG + V W +G
Sbjct: 108 HNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQE 164
Query: 156 ITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMH 198
GV T + + + L P RS Y+CQV H
Sbjct: 165 EKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEH 204
>gi|24797074 major histocompatibility complex, class II, DP alpha 1
precursor [Homo sapiens]
Length = 260
Score = 51.2 bits (121), Expect = 6e-07
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 114 PSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKY 173
P VT+FP EL TL+C ++ F+P +L VTW +G +T+GV + +++ +
Sbjct: 118 PEVTVFPKEPVEL-GQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSF 176
Query: 174 AASSYLSLTPEQWRSRRSYSCQVMHEG 200
YL+ P + Y C+V H G
Sbjct: 177 HKFHYLTFVPS---AEDFYDCRVEHWG 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,334,669
Number of Sequences: 37866
Number of extensions: 515905
Number of successful extensions: 1664
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 185
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.