Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 51173744
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51173744 tumor protein D52-like 1 isoform 2 [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51173744 tumor protein D52-like 1 isoform 2 [Homo sapiens] 342 7e-95
gi|4507641 tumor protein D52-like 1 isoform 1 [Homo sapiens] 342 7e-95
gi|51173746 tumor protein D52-like 1 isoform 3 [Homo sapiens] 222 1e-58
gi|70608174 tumor protein D52 isoform 2 [Homo sapiens] 198 2e-51
gi|51173748 tumor protein D52-like 1 isoform 4 [Homo sapiens] 195 1e-50
gi|40805870 tumor protein D52-like 2 isoform d [Homo sapiens] 182 2e-46
gi|40805866 tumor protein D52-like 2 isoform b [Homo sapiens] 178 2e-45
gi|4827038 tumor protein D52 isoform 3 [Homo sapiens] 177 5e-45
gi|70608172 tumor protein D52 isoform 1 [Homo sapiens] 177 5e-45
gi|40805868 tumor protein D52-like 2 isoform c [Homo sapiens] 170 7e-43
gi|40805864 tumor protein D52-like 2 isoform a [Homo sapiens] 166 7e-42
gi|40805862 tumor protein D52-like 2 isoform f [Homo sapiens] 152 1e-37
gi|40805860 tumor protein D52-like 2 isoform e [Homo sapiens] 140 6e-34
gi|49574214 protein kinase NYD-SP25 isoform 1 [Homo sapiens] 89 3e-18
gi|49574216 protein kinase NYD-SP25 isoform 3 [Homo sapiens] 86 2e-17
gi|49574212 protein kinase NYD-SP25 isoform 2 [Homo sapiens] 86 2e-17
gi|4505257 moesin [Homo sapiens] 39 0.002
gi|24497609 nucleoporin 62kDa [Homo sapiens] 36 0.019
gi|24497607 nucleoporin 62kDa [Homo sapiens] 36 0.019
gi|24497605 nucleoporin 62kDa [Homo sapiens] 36 0.019
gi|24497603 nucleoporin 62kDa [Homo sapiens] 36 0.019
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 35 0.033
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 35 0.033
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 35 0.033
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 35 0.033
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 35 0.033
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 35 0.033
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] 34 0.074
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 33 0.13
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 33 0.13
>gi|51173744 tumor protein D52-like 1 isoform 2 [Homo sapiens]
Length = 175
Score = 342 bits (878), Expect = 7e-95
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD 60
MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD
Sbjct: 1 MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD 60
Query: 61 MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKS 120
MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKS
Sbjct: 61 MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKS 120
Query: 121 FEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQC 175
FEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQC
Sbjct: 121 FEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQC 175
>gi|4507641 tumor protein D52-like 1 isoform 1 [Homo sapiens]
Length = 204
Score = 342 bits (878), Expect = 7e-95
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD 60
MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD
Sbjct: 30 MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD 89
Query: 61 MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKS 120
MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKS
Sbjct: 90 MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKS 149
Query: 121 FEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQC 175
FEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQC
Sbjct: 150 FEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQC 204
>gi|51173746 tumor protein D52-like 1 isoform 3 [Homo sapiens]
Length = 144
Score = 222 bits (566), Expect = 1e-58
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD 60
MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD
Sbjct: 30 MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD 89
Query: 61 MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMR 113
MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMR
Sbjct: 90 MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMR 142
>gi|70608174 tumor protein D52 isoform 2 [Homo sapiens]
Length = 207
Score = 198 bits (504), Expect = 2e-51
Identities = 109/179 (60%), Positives = 136/179 (75%), Gaps = 14/179 (7%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
LSEEE+EEL+ EL ++E+EI TL QVL+AKE+HL EIK+KLG+N + ELKQN +K W D+
Sbjct: 31 LSEEEQEELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDV 90
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDM-------SYSIR---HSISMPA 111
T+AYKKT ETLS AGQKA+AAFS+VG+ I+KK D+ S+SIR HSISMPA
Sbjct: 91 TATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKLQAFSHSFSIRSIQHSISMPA 150
Query: 112 MRNSPTFKSFEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKE 170
MRNSPTFKSFEE+VE +LK+KVGGT P GG F EVL+S A+ASA + +T+E
Sbjct: 151 MRNSPTFKSFEEKVE----NLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQE 205
>gi|51173748 tumor protein D52-like 1 isoform 4 [Homo sapiens]
Length = 131
Score = 195 bits (496), Expect = 1e-50
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD 60
MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD
Sbjct: 30 MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHD 89
Query: 61 MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDM 99
MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDM
Sbjct: 90 MQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDM 128
>gi|40805870 tumor protein D52-like 2 isoform d [Homo sapiens]
Length = 200
Score = 182 bits (461), Expect = 2e-46
Identities = 94/143 (65%), Positives = 117/143 (81%), Gaps = 5/143 (3%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+EEL+AEL ++E+EI TLRQVL+AKERH E+K++LG++ + ELKQN S+SWHD+
Sbjct: 41 LTEAEEEELRAELTKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDV 100
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDM-SYSIRHSISMPAMRNSPTFKS 120
Q ++AYKKT ETLS AGQK +AA S VG+AIS+K GDM SYSIRHSISMPAMRNS TFKS
Sbjct: 101 QVSSAYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMSSYSIRHSISMPAMRNSATFKS 160
Query: 121 FEERVETTVTSLKTKVGGTNPNG 143
FE+RV T +K+KV G NG
Sbjct: 161 FEDRVGT----IKSKVVGDRENG 179
>gi|40805866 tumor protein D52-like 2 isoform b [Homo sapiens]
Length = 209
Score = 178 bits (452), Expect = 2e-45
Identities = 94/152 (61%), Positives = 117/152 (76%), Gaps = 14/152 (9%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+EEL+AEL ++E+EI TLRQVL+AKERH E+K++LG++ + ELKQN S+SWHD+
Sbjct: 41 LTEAEEEELRAELTKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDV 100
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDM----------SYSIRHSISMPA 111
Q ++AYKKT ETLS AGQK +AA S VG+AIS+K GDM SYSIRHSISMPA
Sbjct: 101 QVSSAYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRAHPFSHSFSSYSIRHSISMPA 160
Query: 112 MRNSPTFKSFEERVETTVTSLKTKVGGTNPNG 143
MRNS TFKSFE+RV T +K+KV G NG
Sbjct: 161 MRNSATFKSFEDRVGT----IKSKVVGDRENG 188
>gi|4827038 tumor protein D52 isoform 3 [Homo sapiens]
Length = 184
Score = 177 bits (448), Expect = 5e-45
Identities = 96/169 (56%), Positives = 123/169 (72%), Gaps = 17/169 (10%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
LSEEE+EEL+ EL ++E+EI TL QVL+AKE+HL EIK+KLG+N + ELKQN +K W D+
Sbjct: 31 LSEEEQEELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDV 90
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
T+AYKKT ETLS AGQKA+AAFS+VG+ I+KK D ++NSPTFKSF
Sbjct: 91 TATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLED-------------VKNSPTFKSF 137
Query: 122 EERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKE 170
EE+VE +LK+KVGGT P GG F EVL+S A+ASA + +T+E
Sbjct: 138 EEKVE----NLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQE 182
>gi|70608172 tumor protein D52 isoform 1 [Homo sapiens]
Length = 224
Score = 177 bits (448), Expect = 5e-45
Identities = 96/169 (56%), Positives = 123/169 (72%), Gaps = 17/169 (10%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
LSEEE+EEL+ EL ++E+EI TL QVL+AKE+HL EIK+KLG+N + ELKQN +K W D+
Sbjct: 71 LSEEEQEELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDV 130
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
T+AYKKT ETLS AGQKA+AAFS+VG+ I+KK D ++NSPTFKSF
Sbjct: 131 TATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLED-------------VKNSPTFKSF 177
Query: 122 EERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKE 170
EE+VE +LK+KVGGT P GG F EVL+S A+ASA + +T+E
Sbjct: 178 EEKVE----NLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQE 222
>gi|40805868 tumor protein D52-like 2 isoform c [Homo sapiens]
Length = 220
Score = 170 bits (430), Expect = 7e-43
Identities = 94/163 (57%), Positives = 117/163 (71%), Gaps = 25/163 (15%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+EEL+AEL ++E+EI TLRQVL+AKERH E+K++LG++ + ELKQN S+SWHD+
Sbjct: 41 LTEAEEEELRAELTKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDV 100
Query: 62 QTTTA--------------------YKKTHETLSHAGQKATAAFSNVGTAISKKFGDM-S 100
Q ++A YKKT ETLS AGQK +AA S VG+AIS+K GDM S
Sbjct: 101 QVSSAYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMSS 160
Query: 101 YSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNPNG 143
YSIRHSISMPAMRNS TFKSFE+RV T +K+KV G NG
Sbjct: 161 YSIRHSISMPAMRNSATFKSFEDRVGT----IKSKVVGDRENG 199
>gi|40805864 tumor protein D52-like 2 isoform a [Homo sapiens]
Length = 229
Score = 166 bits (421), Expect = 7e-42
Identities = 94/172 (54%), Positives = 117/172 (68%), Gaps = 34/172 (19%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+EEL+AEL ++E+EI TLRQVL+AKERH E+K++LG++ + ELKQN S+SWHD+
Sbjct: 41 LTEAEEEELRAELTKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDV 100
Query: 62 QTTTA--------------------YKKTHETLSHAGQKATAAFSNVGTAISKKFGDM-- 99
Q ++A YKKT ETLS AGQK +AA S VG+AIS+K GDM
Sbjct: 101 QVSSAYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRA 160
Query: 100 --------SYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNPNG 143
SYSIRHSISMPAMRNS TFKSFE+RV T +K+KV G NG
Sbjct: 161 HPFSHSFSSYSIRHSISMPAMRNSATFKSFEDRVGT----IKSKVVGDRENG 208
>gi|40805862 tumor protein D52-like 2 isoform f [Homo sapiens]
Length = 186
Score = 152 bits (384), Expect = 1e-37
Identities = 81/142 (57%), Positives = 104/142 (73%), Gaps = 17/142 (11%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+EEL+AEL ++E+EI TLRQVL+AKERH E+K++LG++ + ELKQN S+SWHD+
Sbjct: 41 LTEAEEEELRAELTKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDV 100
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
Q ++AYKKT ETLS AGQK +AA S VG+AIS+K GD MRNS TFKSF
Sbjct: 101 QVSSAYKKTQETLSQAGQKTSAALSTVGSAISRKLGD-------------MRNSATFKSF 147
Query: 122 EERVETTVTSLKTKVGGTNPNG 143
E+RV T +K+KV G NG
Sbjct: 148 EDRVGT----IKSKVVGDRENG 165
>gi|40805860 tumor protein D52-like 2 isoform e [Homo sapiens]
Length = 206
Score = 140 bits (353), Expect = 6e-34
Identities = 81/162 (50%), Positives = 104/162 (64%), Gaps = 37/162 (22%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+EEL+AEL ++E+EI TLRQVL+AKERH E+K++LG++ + ELKQN S+SWHD+
Sbjct: 41 LTEAEEEELRAELTKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDV 100
Query: 62 QTTTA--------------------YKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSY 101
Q ++A YKKT ETLS AGQK +AA S VG+AIS+K GD
Sbjct: 101 QVSSAYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGD--- 157
Query: 102 SIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNPNG 143
MRNS TFKSFE+RV T +K+KV G NG
Sbjct: 158 ----------MRNSATFKSFEDRVGT----IKSKVVGDRENG 185
>gi|49574214 protein kinase NYD-SP25 isoform 1 [Homo sapiens]
Length = 140
Score = 88.6 bits (218), Expect = 3e-18
Identities = 56/137 (40%), Positives = 77/137 (56%), Gaps = 26/137 (18%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+ ELK +L +LE EI TLR VL+AKER E+K+KLG+ + L+QN SKSW D+
Sbjct: 24 LTEPEQRELKTKLTKLEAEIVTLRHVLAAKERRCGELKRKLGLTALVGLRQNLSKSWLDV 83
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
Q + Y K QK +AA S +GT I +K G ++ S T +SF
Sbjct: 84 QVSNTYVK---------QKTSAALSTMGTLICRKLG-------------GVKKSATLRSF 121
Query: 122 EERVETTVTSLKTKVGG 138
E + T +K+KV G
Sbjct: 122 EGLMGT----IKSKVSG 134
>gi|49574216 protein kinase NYD-SP25 isoform 3 [Homo sapiens]
Length = 132
Score = 85.5 bits (210), Expect = 2e-17
Identities = 51/121 (42%), Positives = 69/121 (57%), Gaps = 22/121 (18%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+ ELK +L +LE EI TLR VL+AKER E+K+KLG+ + L+QN SKSW D+
Sbjct: 24 LTEPEQRELKTKLTKLEAEIVTLRHVLAAKERRCGELKRKLGLTALVGLRQNLSKSWLDV 83
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
Q + Y K QK +AA S +GT I +K G ++ S T +SF
Sbjct: 84 QVSNTYVK---------QKTSAALSTMGTLICRKLG-------------GVKKSATLRSF 121
Query: 122 E 122
E
Sbjct: 122 E 122
>gi|49574212 protein kinase NYD-SP25 isoform 2 [Homo sapiens]
Length = 136
Score = 85.5 bits (210), Expect = 2e-17
Identities = 51/121 (42%), Positives = 69/121 (57%), Gaps = 22/121 (18%)
Query: 2 LSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDM 61
L+E E+ ELK +L +LE EI TLR VL+AKER E+K+KLG+ + L+QN SKSW D+
Sbjct: 24 LTEPEQRELKTKLTKLEAEIVTLRHVLAAKERRCGELKRKLGLTALVGLRQNLSKSWLDV 83
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
Q + Y K QK +AA S +GT I +K G ++ S T +SF
Sbjct: 84 QVSNTYVK---------QKTSAALSTMGTLICRKLG-------------GVKKSATLRSF 121
Query: 122 E 122
E
Sbjct: 122 E 122
>gi|4505257 moesin [Homo sapiens]
Length = 577
Score = 38.9 bits (89), Expect = 0.002
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 21/178 (11%)
Query: 4 EEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKL------GMNLMNELKQNFSKS 57
E EKEEL L Q+E++ +Q L + R +E++Q+ L E ++
Sbjct: 341 EREKEELMERLKQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEKLAKERQEAEEAK 400
Query: 58 WHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPT 117
+Q + KKT E L+ + TA S + A KK + A+
Sbjct: 401 EALLQASRDQKKTQEQLALEMAELTARISQLEMARQKKESE------------AVEWQQK 448
Query: 118 FKSFEERVETTVTSLKTKVGG---TNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEE 172
+ +E +E T LKT + P +E + A ASA A + + EE
Sbjct: 449 AQMVQEDLEKTRAELKTAMSTPHVAEPAENEQDEQDENGAEASADLRADAMAKDRSEE 506
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.019
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 82 TAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNP 141
TA ++ GT S G ++ ++ + PAM N F + ++S T GT P
Sbjct: 78 TATLASGGTGFSLGIGASKLNLSNTAATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAP 137
Query: 142 NGGSFEEVLSSTAHASAQ---SLAGGS 165
G F +S A A+ S GGS
Sbjct: 138 TGFVFGPSTTSVAPATTSGGFSFTGGS 164
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.019
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 82 TAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNP 141
TA ++ GT S G ++ ++ + PAM N F + ++S T GT P
Sbjct: 78 TATLASGGTGFSLGIGASKLNLSNTAATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAP 137
Query: 142 NGGSFEEVLSSTAHASAQ---SLAGGS 165
G F +S A A+ S GGS
Sbjct: 138 TGFVFGPSTTSVAPATTSGGFSFTGGS 164
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.019
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 82 TAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNP 141
TA ++ GT S G ++ ++ + PAM N F + ++S T GT P
Sbjct: 78 TATLASGGTGFSLGIGASKLNLSNTAATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAP 137
Query: 142 NGGSFEEVLSSTAHASAQ---SLAGGS 165
G F +S A A+ S GGS
Sbjct: 138 TGFVFGPSTTSVAPATTSGGFSFTGGS 164
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.019
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 82 TAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNP 141
TA ++ GT S G ++ ++ + PAM N F + ++S T GT P
Sbjct: 78 TATLASGGTGFSLGIGASKLNLSNTAATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAP 137
Query: 142 NGGSFEEVLSSTAHASAQ---SLAGGS 165
G F +S A A+ S GGS
Sbjct: 138 TGFVFGPSTTSVAPATTSGGFSFTGGS 164
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 35.0 bits (79), Expect = 0.033
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQ 62
S +EKE++ +E+VQ+ E++ ++ +E+ ++ K +NEL Q F ++ ++
Sbjct: 813 SVKEKEKVHSEVVQIRSEVSQVK-----REKENIQTLLKSKEQEVNELLQKFQQAQEELA 867
Query: 63 TTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFE 122
Y ++ L K S T + + +S + +S S + R S ++ +
Sbjct: 868 EMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLS-QLSYSTS-SSKRQSQQLEALQ 925
Query: 123 ERVE 126
++V+
Sbjct: 926 QQVK 929
Score = 27.3 bits (59), Expect = 6.9
Identities = 24/151 (15%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLG-MNLMNELKQNFSKSWHDM 61
+E+ E+K++ ++ +E+T L+Q++ A++ + V I + L + + + + ++
Sbjct: 698 AEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNL 757
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
+ A K+ A + + S+ +S+ A + + K
Sbjct: 758 KEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKE- 816
Query: 122 EERVETTVTSLKTKVGGTNPNGGSFEEVLSS 152
+E+V + V ++++V + + +L S
Sbjct: 817 KEKVHSEVVQIRSEVSQVKREKENIQTLLKS 847
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 35.0 bits (79), Expect = 0.033
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQ 62
S +EKE++ +E+VQ+ E++ ++ +E+ ++ K +NEL Q F ++ ++
Sbjct: 802 SVKEKEKVHSEVVQIRSEVSQVK-----REKENIQTLLKSKEQEVNELLQKFQQAQEELA 856
Query: 63 TTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFE 122
Y ++ L K S T + + +S + +S S + R S ++ +
Sbjct: 857 EMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLS-QLSYSTS-SSKRQSQQLEALQ 914
Query: 123 ERVE 126
++V+
Sbjct: 915 QQVK 918
Score = 27.3 bits (59), Expect = 6.9
Identities = 24/151 (15%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLG-MNLMNELKQNFSKSWHDM 61
+E+ E+K++ ++ +E+T L+Q++ A++ + V I + L + + + + ++
Sbjct: 687 AEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNL 746
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
+ A K+ A + + S+ +S+ A + + K
Sbjct: 747 KEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKE- 805
Query: 122 EERVETTVTSLKTKVGGTNPNGGSFEEVLSS 152
+E+V + V ++++V + + +L S
Sbjct: 806 KEKVHSEVVQIRSEVSQVKREKENIQTLLKS 836
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 35.0 bits (79), Expect = 0.033
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQ 62
S +EKE++ +E+VQ+ E++ ++ +E+ ++ K +NEL Q F ++ ++
Sbjct: 781 SVKEKEKVHSEVVQIRSEVSQVK-----REKENIQTLLKSKEQEVNELLQKFQQAQEELA 835
Query: 63 TTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFE 122
Y ++ L K S T + + +S + +S S + R S ++ +
Sbjct: 836 EMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLS-QLSYSTS-SSKRQSQQLEALQ 893
Query: 123 ERVE 126
++V+
Sbjct: 894 QQVK 897
Score = 27.3 bits (59), Expect = 6.9
Identities = 24/151 (15%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLG-MNLMNELKQNFSKSWHDM 61
+E+ E+K++ ++ +E+T L+Q++ A++ + V I + L + + + + ++
Sbjct: 666 AEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNL 725
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
+ A K+ A + + S+ +S+ A + + K
Sbjct: 726 KEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKE- 784
Query: 122 EERVETTVTSLKTKVGGTNPNGGSFEEVLSS 152
+E+V + V ++++V + + +L S
Sbjct: 785 KEKVHSEVVQIRSEVSQVKREKENIQTLLKS 815
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 35.0 bits (79), Expect = 0.033
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQ 62
S +EKE++ +E+VQ+ E++ ++ +E+ ++ K +NEL Q F ++ ++
Sbjct: 810 SVKEKEKVHSEVVQIRSEVSQVK-----REKENIQTLLKSKEQEVNELLQKFQQAQEELA 864
Query: 63 TTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFE 122
Y ++ L K S T + + +S + +S S + R S ++ +
Sbjct: 865 EMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLS-QLSYSTS-SSKRQSQQLEALQ 922
Query: 123 ERVE 126
++V+
Sbjct: 923 QQVK 926
Score = 27.3 bits (59), Expect = 6.9
Identities = 24/151 (15%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLG-MNLMNELKQNFSKSWHDM 61
+E+ E+K++ ++ +E+T L+Q++ A++ + V I + L + + + + ++
Sbjct: 695 AEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNL 754
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
+ A K+ A + + S+ +S+ A + + K
Sbjct: 755 KEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKE- 813
Query: 122 EERVETTVTSLKTKVGGTNPNGGSFEEVLSS 152
+E+V + V ++++V + + +L S
Sbjct: 814 KEKVHSEVVQIRSEVSQVKREKENIQTLLKS 844
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 35.0 bits (79), Expect = 0.033
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQ 62
S +EKE++ +E+VQ+ E++ ++ +E+ ++ K +NEL Q F ++ ++
Sbjct: 810 SVKEKEKVHSEVVQIRSEVSQVK-----REKENIQTLLKSKEQEVNELLQKFQQAQEELA 864
Query: 63 TTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFE 122
Y ++ L K S T + + +S + +S S + R S ++ +
Sbjct: 865 EMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLS-QLSYSTS-SSKRQSQQLEALQ 922
Query: 123 ERVE 126
++V+
Sbjct: 923 QQVK 926
Score = 27.3 bits (59), Expect = 6.9
Identities = 24/151 (15%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLG-MNLMNELKQNFSKSWHDM 61
+E+ E+K++ ++ +E+T L+Q++ A++ + V I + L + + + + ++
Sbjct: 695 AEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNL 754
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
+ A K+ A + + S+ +S+ A + + K
Sbjct: 755 KEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKE- 813
Query: 122 EERVETTVTSLKTKVGGTNPNGGSFEEVLSS 152
+E+V + V ++++V + + +L S
Sbjct: 814 KEKVHSEVVQIRSEVSQVKREKENIQTLLKS 844
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 35.0 bits (79), Expect = 0.033
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQ 62
S +EKE++ +E+VQ+ E++ ++ +E+ ++ K +NEL Q F ++ ++
Sbjct: 810 SVKEKEKVHSEVVQIRSEVSQVK-----REKENIQTLLKSKEQEVNELLQKFQQAQEELA 864
Query: 63 TTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFE 122
Y ++ L K S T + + +S + +S S + R S ++ +
Sbjct: 865 EMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLS-QLSYSTS-SSKRQSQQLEALQ 922
Query: 123 ERVE 126
++V+
Sbjct: 923 QQVK 926
Score = 27.3 bits (59), Expect = 6.9
Identities = 24/151 (15%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLG-MNLMNELKQNFSKSWHDM 61
+E+ E+K++ ++ +E+T L+Q++ A++ + V I + L + + + + ++
Sbjct: 695 AEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNL 754
Query: 62 QTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSF 121
+ A K+ A + + S+ +S+ A + + K
Sbjct: 755 KEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKE- 813
Query: 122 EERVETTVTSLKTKVGGTNPNGGSFEEVLSS 152
+E+V + V ++++V + + +L S
Sbjct: 814 KEKVHSEVVQIRSEVSQVKREKENIQTLLKS 844
>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
Length = 731
Score = 33.9 bits (76), Expect = 0.074
Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 15/180 (8%)
Query: 10 LKAELVQLEDEITTLRQVLSA--KERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTT-- 65
LK L + + ++T + L A E+ + Q G +L N+ Q F + H+ T
Sbjct: 304 LKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKR 363
Query: 66 ---AYKKTHETLSHAGQKATAAFSNVGTAIS---KKFGDMSYSIRHSISMPAMRNSPTFK 119
+YK+ + K N+ AI+ +K+ D + +
Sbjct: 364 EQESYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLES 423
Query: 120 SFEERVE-----TTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQ 174
S +E ++ T + K K+ + G FE + SSTA + + + EE+Q
Sbjct: 424 SKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQ 483
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELK 51
+E+E ++L AEL LED+ + + +A E L EI QK NL+ ELK
Sbjct: 951 TEKEVDDLTAELKSLEDKAAEVVKNTNAAEESLPEI-QKEHRNLLQELK 998
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 3 SEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELK 51
+E+E ++L AEL LED+ + + +A E L EI QK NL+ ELK
Sbjct: 951 TEKEVDDLTAELKSLEDKAAEVVKNTNAAEESLPEI-QKEHRNLLQELK 998
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.121 0.320
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,820,428
Number of Sequences: 37866
Number of extensions: 224706
Number of successful extensions: 1557
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1310
Number of HSP's gapped (non-prelim): 283
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.