Guide to the Human Genome
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Name: TPD52L1 Sequence: fasta or formatted (131aa) NCBI GI: 51173748
Description:

tumor protein D52-like 1 isoform 4

Referenced in:

B cells

Other entries for this name:
alt prot [204aa] tumor protein D52-like 1 isoform 1
alt prot [175aa] tumor protein D52-like 1 isoform 2
alt prot [144aa] tumor protein D52-like 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         13           2
 C cysteine            0.0          0           0
 D aspartate           4.6          6           1
 E glutamate          12.2         16           3
 F phenylalanine       3.1          4           1
 G glycine             4.6          6           1
 H histidine           3.1          4           1
 I isoleucine          2.3          3           1
 K lysine              9.9         13           2
 L leucine            10.7         14           2
 M methionine          4.6          6           1
 N asparagine          3.1          4           1
 P proline             0.8          1           1
 Q glutamine           6.9          9           1
 R arginine            3.1          4           2
 S serine              7.6         10           2
 T threonine           8.4         11           3
 V valine              3.8          5           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor protein D52-like 1 isoform 4 
TPD52L1               0.974   tumor protein D52-like 1 isoform 1 
TPD52L1               0.974   tumor protein D52-like 1 isoform 3 
TPD52L1               0.739   tumor protein D52-like 1 isoform 2 
TPD52                 0.530   tumor protein D52 isoform 3 
TPD52                 0.530   tumor protein D52 isoform 2 
TPD52                 0.517   tumor protein D52 isoform 1 
TPD52L2               0.478   tumor protein D52-like 2 isoform f 
TPD52L2               0.478   tumor protein D52-like 2 isoform b 
TPD52L2               0.470   tumor protein D52-like 2 isoform d 
TPD52L2               0.426   tumor protein D52-like 2 isoform e 
TPD52L2               0.426   tumor protein D52-like 2 isoform a 
TPD52L2               0.417   tumor protein D52-like 2 isoform c 
TPD52L3               0.265   protein kinase NYD-SP25 isoform 3 
TPD52L3               0.265   protein kinase NYD-SP25 isoform 1 
TPD52L3               0.265   protein kinase NYD-SP25 isoform 2 
KIAA1026              0.048   kazrin isoform E 
KIAA1026              0.048   kazrin isoform C 
KIAA1026              0.048   kazrin isoform B 
KIAA1026              0.048   kazrin isoform C 
KIAA1026              0.048   kazrin isoform A 
MSN                   0.048   moesin 
CCDC88C               0.043   DVL-binding protein DAPLE 
RAI14                 0.039   retinoic acid induced 14 isoform d 
RAI14                 0.039   retinoic acid induced 14 isoform c 
RAI14                 0.039   retinoic acid induced 14 isoform b 
RAI14                 0.039   retinoic acid induced 14 isoform a 
RAI14                 0.039   retinoic acid induced 14 isoform a 
RAI14                 0.039   retinoic acid induced 14 isoform a 
SMC4                  0.039   SMC4 structural maintenance of chromosomes 4-like 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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