Guide to the Human Genome
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Name: TPD52L1 Sequence: fasta or formatted (144aa) NCBI GI: 51173746
Description:

tumor protein D52-like 1 isoform 3

Referenced in:

B cells

Other entries for this name:
alt prot [204aa] tumor protein D52-like 1 isoform 1
alt prot [175aa] tumor protein D52-like 1 isoform 2
alt prot [131aa] tumor protein D52-like 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         14           2
 C cysteine            0.0          0           0
 D aspartate           4.2          6           1
 E glutamate          11.1         16           3
 F phenylalanine       2.8          4           1
 G glycine             4.2          6           1
 H histidine           3.5          5           1
 I isoleucine          3.5          5           1
 K lysine              9.0         13           2
 L leucine             9.7         14           2
 M methionine          5.6          8           1
 N asparagine          2.8          4           1
 P proline             1.4          2           1
 Q glutamine           6.2          9           1
 R arginine            3.5          5           2
 S serine              9.7         14           2
 T threonine           7.6         11           3
 V valine              3.5          5           1
 W tryptophan          0.7          1           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor protein D52-like 1 isoform 3 
TPD52L1               0.984   tumor protein D52-like 1 isoform 1 
TPD52L1               0.878   tumor protein D52-like 1 isoform 4 
TPD52L1               0.773   tumor protein D52-like 1 isoform 2 
TPD52                 0.525   tumor protein D52 isoform 2 
TPD52L2               0.510   tumor protein D52-like 2 isoform d 
TPD52L2               0.498   tumor protein D52-like 2 isoform b 
TPD52                 0.478   tumor protein D52 isoform 3 
TPD52                 0.467   tumor protein D52 isoform 1 
TPD52L2               0.463   tumor protein D52-like 2 isoform c 
TPD52L2               0.451   tumor protein D52-like 2 isoform a 
TPD52L2               0.424   tumor protein D52-like 2 isoform f 
TPD52L2               0.376   tumor protein D52-like 2 isoform e 
TPD52L3               0.235   protein kinase NYD-SP25 isoform 3 
TPD52L3               0.235   protein kinase NYD-SP25 isoform 1 
TPD52L3               0.235   protein kinase NYD-SP25 isoform 2 
KIAA1026              0.043   kazrin isoform E 
KIAA1026              0.043   kazrin isoform C 
KIAA1026              0.043   kazrin isoform B 
KIAA1026              0.043   kazrin isoform C 
KIAA1026              0.043   kazrin isoform A 
MSN                   0.043   moesin 
RAI14                 0.043   retinoic acid induced 14 isoform d 
RAI14                 0.043   retinoic acid induced 14 isoform c 
RAI14                 0.043   retinoic acid induced 14 isoform b 
RAI14                 0.043   retinoic acid induced 14 isoform a 
RAI14                 0.043   retinoic acid induced 14 isoform a 
RAI14                 0.043   retinoic acid induced 14 isoform a 
CCDC88C               0.039   DVL-binding protein DAPLE 
SMC4                  0.035   SMC4 structural maintenance of chromosomes 4-like 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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