Guide to the Human Genome
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Name: TPD52L3 Sequence: fasta or formatted (140aa) NCBI GI: 49574214
Description:

protein kinase NYD-SP25 isoform 1

Referenced in:

B cells

Other entries for this name:
alt prot [136aa] protein kinase NYD-SP25 isoform 2
alt prot [132aa] protein kinase NYD-SP25 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4          9           2
 C cysteine            1.4          2           1
 D aspartate           1.4          2           1
 E glutamate           8.6         12           1
 F phenylalanine       0.7          1           1
 G glycine             7.9         11           2
 H histidine           2.1          3           1
 I isoleucine          2.1          3           1
 K lysine             10.7         15           2
 L leucine            13.6         19           1
 M methionine          2.1          3           1
 N asparagine          1.4          2           1
 P proline             2.1          3           1
 Q glutamine           2.9          4           1
 R arginine            7.1         10           2
 S serine              9.3         13           1
 T threonine          10.7         15           1
 V valine              6.4          9           1
 W tryptophan          1.4          2           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase NYD-SP25 isoform 1 
TPD52L3               0.868   protein kinase NYD-SP25 isoform 2 
TPD52L3               0.860   protein kinase NYD-SP25 isoform 3 
TPD52L2               0.480   tumor protein D52-like 2 isoform f 
TPD52L2               0.456   tumor protein D52-like 2 isoform e 
TPD52L2               0.440   tumor protein D52-like 2 isoform d 
TPD52L2               0.428   tumor protein D52-like 2 isoform b 
TPD52L2               0.420   tumor protein D52-like 2 isoform c 
TPD52L2               0.408   tumor protein D52-like 2 isoform a 
TPD52                 0.332   tumor protein D52 isoform 3 
TPD52                 0.332   tumor protein D52 isoform 1 
TPD52                 0.280   tumor protein D52 isoform 2 
TPD52L1               0.256   tumor protein D52-like 1 isoform 2 
TPD52L1               0.256   tumor protein D52-like 1 isoform 1 
TPD52L1               0.244   tumor protein D52-like 1 isoform 4 
TPD52L1               0.240   tumor protein D52-like 1 isoform 3 
TRIM71                0.040   tripartite motif-containing 71 
TRIM39                0.032   tripartite motif-containing 39 isoform 2 
TRIM39                0.032   tripartite motif-containing 39 isoform 1 
GOLGA4                0.028   golgi autoantigen, golgin subfamily a, 4 
JAKMIP3               0.020   Janus kinase and microtubule interacting protein 3 ...
BIRC6                 0.020   baculoviral IAP repeat-containing 6 
UACA                  0.016   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.016   uveal autoantigen with coiled-coil domains and ankyr...
WWC1                  0.016   WW and C2 domain containing 1 isoform 3 
WWC1                  0.016   WW and C2 domain containing 1 isoform 2 
WWC1                  0.016   WW and C2 domain containing 1 isoform 1 
GABBR2                0.016   G protein-coupled receptor 51 
AKAP9                 0.012   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.012   A-kinase anchor protein 9 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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