Guide to the Human Genome
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Name: FOXJ1 Sequence: fasta or formatted (421aa) NCBI GI: 50301236
Description:

forkhead box J1

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         49           2
 C cysteine            1.7          7           1
 D aspartate           5.7         24           2
 E glutamate           7.1         30           2
 F phenylalanine       3.6         15           1
 G glycine             8.6         36           2
 H histidine           3.1         13           1
 I isoleucine          2.9         12           1
 K lysine              4.0         17           2
 L leucine            10.2         43           2
 M methionine          0.7          3           1
 N asparagine          1.9          8           1
 P proline            11.6         49           3
 Q glutamine           4.0         17           2
 R arginine            4.0         17           2
 S serine              6.9         29           2
 T threonine           5.2         22           1
 V valine              3.1         13           1
 W tryptophan          2.4         10           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box J1 
FOXD2                 0.122   forkhead box D2 
FOXA3                 0.117   forkhead box A3 
FOXJ2                 0.117   forkhead box J2 
FOXK2                 0.115   forkhead box K2 
FOXS1                 0.114   forkhead box S1 
FOXI3                 0.114   forkhead box I3 
FOXJ3                 0.113   forkhead box J3 
FOXL1                 0.112   forkhead box L1 
FOXD1                 0.112   forkhead box D1 
FOXE3                 0.111   forkhead box E3 
FOXD4L1               0.111   forkhead box D4-like 1 
FOXD4                 0.111   forkhead box D4 
FOXD4L3               0.110   forkhead box D4-like 3 
FOXK1                 0.110   forkhead box K1 
FOXI1                 0.108   forkhead box I1 isoform a 
FOXD4L2               0.107   forkhead box D4-like 2 
FOXD4L5               0.107   forkhead box D4-like 5 
FOXD4L6               0.107   forkhead box D4-like 6 
FOXD4L4               0.107   forkhead box D4-like 4 
FOXD3                 0.107   forkhead box D3 
FOXI2                 0.106   forkhead box I2 
FOXA1                 0.105   forkhead box A1 
FOXE1                 0.105   forkhead box E1 
FOXC1                 0.105   forkhead box C1 
FOXB1                 0.104   forkhead box B1 
FOXC2                 0.103   forkhead box C2 
FOXA2                 0.100   forkhead box A2 isoform 2 
FOXA2                 0.100   forkhead box A2 isoform 1 
FOXB2                 0.099   forkhead box B2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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