Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FOXD4L1 Sequence: fasta or formatted (408aa) NCBI GI: 18959276
Description:

forkhead box D4-like 1

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         47           3
 C cysteine            1.0          4           1
 D aspartate           3.7         15           1
 E glutamate           5.6         23           4
 F phenylalanine       3.2         13           1
 G glycine            11.3         46           3
 H histidine           2.9         12           1
 I isoleucine          2.9         12           1
 K lysine              2.9         12           2
 L leucine             9.6         39           3
 M methionine          1.0          4           1
 N asparagine          2.0          8           1
 P proline            12.3         50           2
 Q glutamine           4.4         18           1
 R arginine            8.3         34           3
 S serine              8.1         33           2
 T threonine           2.9         12           1
 V valine              2.7         11           1
 W tryptophan          1.2          5           1
 Y tyrosine            2.5         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box D4-like 1 
FOXD4L5               0.691   forkhead box D4-like 5 
FOXD4L2               0.690   forkhead box D4-like 2 
FOXD4L4               0.690   forkhead box D4-like 4 
FOXD4L3               0.688   forkhead box D4-like 3 
FOXD4L6               0.685   forkhead box D4-like 6 
FOXD4                 0.667   forkhead box D4 
FOXD1                 0.250   forkhead box D1 
FOXD2                 0.248   forkhead box D2 
FOXD3                 0.229   forkhead box D3 
FOXE1                 0.195   forkhead box E1 
FOXE3                 0.194   forkhead box E3 
FOXC1                 0.179   forkhead box C1 
FOXL1                 0.163   forkhead box L1 
FOXC2                 0.163   forkhead box C2 
FOXS1                 0.161   forkhead box S1 
FOXB2                 0.152   forkhead box B2 
FOXF1                 0.151   forkhead box F1 
FOXF2                 0.150   forkhead box F2 
FOXL2                 0.149   forkhead box L2 
FOXA1                 0.148   forkhead box A1 
FOXB1                 0.146   forkhead box B1 
FOXA3                 0.141   forkhead box A3 
FOXI3                 0.140   forkhead box I3 
FOXA2                 0.139   forkhead box A2 isoform 2 
FOXA2                 0.139   forkhead box A2 isoform 1 
LOC651986             0.137   PREDICTED: similar to forkhead box L2 
FOXI2                 0.135   forkhead box I2 
FOXI1                 0.134   forkhead box I1 isoform a 
LOC651986             0.130   PREDICTED: similar to forkhead box L2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press