Guide to the Human Genome
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Name: FOXF1 Sequence: fasta or formatted (379aa) NCBI GI: 110735445
Description:

forkhead box F1

Referenced in:

FOX Family
Lung

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         33           3
 C cysteine            1.8          7           1
 D aspartate           1.8          7           1
 E glutamate           3.4         13           2
 F phenylalanine       3.7         14           2
 G glycine            13.2         50          11
 H histidine           4.5         17           2
 I isoleucine          2.6         10           1
 K lysine              4.0         15           2
 L leucine             7.1         27           2
 M methionine          4.2         16           2
 N asparagine          4.2         16           1
 P proline            10.0         38           2
 Q glutamine           4.5         17           2
 R arginine            4.0         15           3
 S serine             12.4         47           3
 T threonine           2.1          8           1
 V valine              2.6         10           1
 W tryptophan          0.8          3           1
 Y tyrosine            4.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box F1 
FOXF2                 0.449   forkhead box F2 
FOXD1                 0.195   forkhead box D1 
FOXD3                 0.173   forkhead box D3 
FOXL2                 0.167   forkhead box L2 
FOXD2                 0.166   forkhead box D2 
FOXD4L3               0.163   forkhead box D4-like 3 
FOXD4L2               0.163   forkhead box D4-like 2 
FOXD4L5               0.163   forkhead box D4-like 5 
FOXD4L6               0.163   forkhead box D4-like 6 
FOXD4L4               0.163   forkhead box D4-like 4 
FOXC1                 0.162   forkhead box C1 
FOXD4                 0.162   forkhead box D4 
FOXD4L1               0.160   forkhead box D4-like 1 
FOXL1                 0.159   forkhead box L1 
FOXE1                 0.158   forkhead box E1 
FOXC2                 0.157   forkhead box C2 
FOXI2                 0.151   forkhead box I2 
FOXS1                 0.149   forkhead box S1 
FOXE3                 0.147   forkhead box E3 
FOXQ1                 0.144   forkhead box Q1 
FOXI3                 0.144   forkhead box I3 
FOXG1                 0.142   forkhead box G1 
FOXA1                 0.141   forkhead box A1 
FOXA2                 0.140   forkhead box A2 isoform 2 
FOXA2                 0.140   forkhead box A2 isoform 1 
FOXA3                 0.138   forkhead box A3 
FOXI1                 0.135   forkhead box I1 isoform a 
FOXB1                 0.133   forkhead box B1 
FOXB2                 0.125   forkhead box B2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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