Guide to the Human Genome
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Name: FOXA2 Sequence: fasta or formatted (463aa) NCBI GI: 194394143
Description:

forkhead box A2 isoform 1

Referenced in:

FOX Family
Liver
Lung

Other entries for this name:
alt prot [457aa] forkhead box A2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         56           3
 C cysteine            0.9          4           1
 D aspartate           1.9          9           1
 E glutamate           3.9         18           1
 F phenylalanine       1.9          9           1
 G glycine            11.4         53           2
 H histidine           5.2         24           4
 I isoleucine          1.7          8           1
 K lysine              4.1         19           2
 L leucine             6.7         31           2
 M methionine          6.7         31           1
 N asparagine          4.1         19           2
 P proline             9.1         42           2
 Q glutamine           5.2         24           4
 R arginine            2.8         13           2
 S serine             12.5         58           2
 T threonine           2.6         12           1
 V valine              1.7          8           1
 W tryptophan          0.9          4           1
 Y tyrosine            4.5         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box A2 isoform 1 
FOXA2                 0.988   forkhead box A2 isoform 2 
FOXA1                 0.466   forkhead box A1 
FOXA3                 0.273   forkhead box A3 
FOXB2                 0.168   forkhead box B2 
FOXC2                 0.168   forkhead box C2 
FOXB1                 0.166   forkhead box B1 
FOXC1                 0.164   forkhead box C1 
FOXD1                 0.156   forkhead box D1 
FOXD3                 0.150   forkhead box D3 
FOXD2                 0.141   forkhead box D2 
FOXE1                 0.137   forkhead box E1 
FOXI2                 0.136   forkhead box I2 
FOXE3                 0.136   forkhead box E3 
FOXL1                 0.135   forkhead box L1 
FOXI3                 0.128   forkhead box I3 
FOXD4L6               0.125   forkhead box D4-like 6 
FOXF2                 0.125   forkhead box F2 
FOXS1                 0.124   forkhead box S1 
FOXD4L5               0.124   forkhead box D4-like 5 
FOXD4                 0.123   forkhead box D4 
FOXD4L3               0.122   forkhead box D4-like 3 
FOXD4L1               0.122   forkhead box D4-like 1 
FOXD4L2               0.122   forkhead box D4-like 2 
FOXD4L4               0.122   forkhead box D4-like 4 
FOXL2                 0.120   forkhead box L2 
FOXI1                 0.118   forkhead box I1 isoform a 
LOC651986             0.116   PREDICTED: similar to forkhead box L2 
FOXF1                 0.116   forkhead box F1 
LOC651986             0.116   PREDICTED: similar to forkhead box L2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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