Guide to the Human Genome
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Name: FOXD3 Sequence: fasta or formatted (478aa) NCBI GI: 6912372
Description:

forkhead box D3

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.8         85          11
 C cysteine            0.8          4           1
 D aspartate           3.6         17           2
 E glutamate           4.2         20           2
 F phenylalanine       2.5         12           1
 G glycine            14.0         67           3
 H histidine           1.9          9           2
 I isoleucine          2.9         14           2
 K lysine              3.3         16           2
 L leucine             8.4         40           2
 M methionine          1.5          7           2
 N asparagine          2.1         10           1
 P proline            10.3         49           2
 Q glutamine           5.0         24           2
 R arginine            3.3         16           3
 S serine              8.4         40           1
 T threonine           3.8         18           2
 V valine              3.3         16           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box D3 
FOXD1                 0.299   forkhead box D1 
FOXD2                 0.277   forkhead box D2 
FOXD4L1               0.201   forkhead box D4-like 1 
FOXD4L3               0.193   forkhead box D4-like 3 
FOXD4L6               0.193   forkhead box D4-like 6 
FOXD4L2               0.191   forkhead box D4-like 2 
FOXD4L4               0.191   forkhead box D4-like 4 
FOXD4L5               0.191   forkhead box D4-like 5 
FOXE1                 0.188   forkhead box E1 
FOXD4                 0.188   forkhead box D4 
FOXC1                 0.173   forkhead box C1 
FOXC2                 0.173   forkhead box C2 
FOXL2                 0.166   forkhead box L2 
FOXE3                 0.159   forkhead box E3 
FOXB2                 0.157   forkhead box B2 
FOXF2                 0.154   forkhead box F2 
FOXL1                 0.154   forkhead box L1 
FOXA2                 0.150   forkhead box A2 isoform 2 
FOXA2                 0.150   forkhead box A2 isoform 1 
FOXG1                 0.144   forkhead box G1 
FOXB1                 0.144   forkhead box B1 
FOXF1                 0.143   forkhead box F1 
FOXI2                 0.143   forkhead box I2 
FOXA3                 0.138   forkhead box A3 
FOXQ1                 0.137   forkhead box Q1 
FOXI3                 0.137   forkhead box I3 
FOXS1                 0.136   forkhead box S1 
FOXA1                 0.132   forkhead box A1 
FOXI1                 0.126   forkhead box I1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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