Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 50233812
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
(579 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 1184 0.0
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 1101 0.0
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 837 0.0
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 837 0.0
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 837 0.0
gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo ... 355 6e-98
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 48 2e-05
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 48 2e-05
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 43 7e-04
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 43 7e-04
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 39 0.013
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 39 0.017
gi|104526627 triadin [Homo sapiens] 38 0.022
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 37 0.050
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 37 0.050
gi|193788659 cleavage and polyadenylation specific factor 4-like... 37 0.050
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 37 0.065
gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens] 36 0.11
gi|169201475 PREDICTED: similar to hCG1798126, partial [Homo sap... 36 0.11
gi|169190743 PREDICTED: similar to hCG1798126 [Homo sapiens] 36 0.11
gi|122937388 MAX gene associated [Homo sapiens] 36 0.11
gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens] 36 0.11
gi|21536423 amphiphysin isoform 2 [Homo sapiens] 35 0.14
gi|4502081 amphiphysin isoform 1 [Homo sapiens] 35 0.14
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 35 0.14
gi|41152076 steroid-sensitive protein 1 [Homo sapiens] 35 0.19
gi|41152074 steroid-sensitive protein 1 [Homo sapiens] 35 0.19
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 35 0.19
gi|91982772 mucin 17 [Homo sapiens] 35 0.19
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 35 0.25
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 1184 bits (3063), Expect = 0.0
Identities = 579/579 (100%), Positives = 579/579 (100%)
Query: 1 MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI 60
MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI
Sbjct: 1 MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI 60
Query: 61 RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP 120
RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP
Sbjct: 61 RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP 120
Query: 121 SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD 180
SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD
Sbjct: 121 SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD 180
Query: 181 LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS 240
LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS
Sbjct: 181 LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS 240
Query: 241 IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS 300
IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS
Sbjct: 241 IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS 300
Query: 301 SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS 360
SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS
Sbjct: 301 SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS 360
Query: 361 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 420
EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD
Sbjct: 361 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 420
Query: 421 SVEKNQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLF 480
SVEKNQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLF
Sbjct: 421 SVEKNQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLF 480
Query: 481 VHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYH 540
VHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYH
Sbjct: 481 VHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYH 540
Query: 541 PKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
PKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 541 PKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 1101 bits (2847), Expect = 0.0
Identities = 545/571 (95%), Positives = 545/571 (95%), Gaps = 26/571 (4%)
Query: 35 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 94
MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN
Sbjct: 1 MVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSN 60
Query: 95 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 154
VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR
Sbjct: 61 VPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATR 120
Query: 155 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 214
LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI
Sbjct: 121 LMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEI 180
Query: 215 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 274
YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS
Sbjct: 181 YRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYS 240
Query: 275 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 334
PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV
Sbjct: 241 PFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSV 300
Query: 335 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 394
PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL
Sbjct: 301 PAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL 360
Query: 395 LAEVVQGQSRTPRISPPIKEEETKGDSVEKN-------------------------QAEM 429
LAEVVQGQSRTPRISPPIKEEETKGDSVEKN QAEM
Sbjct: 361 LAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMSQAEM 420
Query: 430 SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA 489
SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA
Sbjct: 421 SELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDA 480
Query: 490 KCTKPDCPFTHVSRRIPVLSPKP-VAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 548
KCTKPDCPFTHVSRRIPVLSPKP VAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT
Sbjct: 481 KCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 540
Query: 549 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
QCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 541 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 571
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 837 bits (2163), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI 60
MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI
Sbjct: 1 MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI 60
Query: 61 RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP 120
RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP
Sbjct: 61 RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP 120
Query: 121 SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD 180
SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD
Sbjct: 121 SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD 180
Query: 181 LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS 240
LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS
Sbjct: 181 LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS 240
Query: 241 IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS 300
IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS
Sbjct: 241 IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS 300
Query: 301 SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS 360
SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS
Sbjct: 301 SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS 360
Query: 361 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 420
EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD
Sbjct: 361 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 420
Query: 421 SVEKNQ 426
SVEKNQ
Sbjct: 421 SVEKNQ 426
Score = 352 bits (903), Expect = 5e-97
Identities = 154/158 (97%), Positives = 155/158 (98%)
Query: 422 VEKNQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFV 481
+E AEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFV
Sbjct: 573 LEDPNAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFV 632
Query: 482 HPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHP 541
HPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHP
Sbjct: 633 HPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHP 692
Query: 542 KHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
KHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 693 KHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 730
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 837 bits (2163), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI 60
MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI
Sbjct: 1 MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI 60
Query: 61 RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP 120
RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP
Sbjct: 61 RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP 120
Query: 121 SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD 180
SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD
Sbjct: 121 SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD 180
Query: 181 LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS 240
LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS
Sbjct: 181 LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS 240
Query: 241 IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS 300
IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS
Sbjct: 241 IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS 300
Query: 301 SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS 360
SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS
Sbjct: 301 SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS 360
Query: 361 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 420
EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD
Sbjct: 361 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 420
Query: 421 SVEKNQ 426
SVEKNQ
Sbjct: 421 SVEKNQ 426
Score = 351 bits (901), Expect = 9e-97
Identities = 153/155 (98%), Positives = 154/155 (99%)
Query: 425 NQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPN 484
+ AEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPN
Sbjct: 581 SNAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPN 640
Query: 485 CKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHC 544
CKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHC
Sbjct: 641 CKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHC 700
Query: 545 RFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
RFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 701 RFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 735
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 837 bits (2163), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI 60
MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI
Sbjct: 1 MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTI 60
Query: 61 RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP 120
RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP
Sbjct: 61 RFTVWLHGVLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIP 120
Query: 121 SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD 180
SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD
Sbjct: 121 SARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDD 180
Query: 181 LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS 240
LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS
Sbjct: 181 LIDEDLNFVQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNS 240
Query: 241 IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS 300
IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS
Sbjct: 241 IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVS 300
Query: 301 SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS 360
SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS
Sbjct: 301 SVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAIS 360
Query: 361 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 420
EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD
Sbjct: 361 EAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD 420
Query: 421 SVEKNQ 426
SVEKNQ
Sbjct: 421 SVEKNQ 426
Score = 347 bits (889), Expect = 2e-95
Identities = 153/156 (98%), Positives = 154/156 (98%), Gaps = 1/156 (0%)
Query: 425 NQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPN 484
+ AEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPN
Sbjct: 581 SNAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPN 640
Query: 485 CKYDAKCTKPDCPFTHVSRRIPVLSPKP-VAPPAPPSSSQLCRYFPACKKMECPFYHPKH 543
CKYDAKCTKPDCPFTHVSRRIPVLSPKP VAPPAPPSSSQLCRYFPACKKMECPFYHPKH
Sbjct: 641 CKYDAKCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKH 700
Query: 544 CRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
CRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 701 CRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 736
>gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo
sapiens]
Length = 306
Score = 355 bits (911), Expect = 6e-98
Identities = 154/160 (96%), Positives = 159/160 (99%)
Query: 420 DSVEKNQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCL 479
++++ +QAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCL
Sbjct: 147 ETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCL 206
Query: 480 FVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFY 539
FVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFY
Sbjct: 207 FVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFY 266
Query: 540 HPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
HPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 267 HPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 306
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 48.1 bits (113), Expect = 2e-05
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 445 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 502
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHI- 115
Query: 503 RRIPVLSPKPVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCTF 557
P+ P C++ P C +++ C Y C P C F
Sbjct: 116 ------DPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCKF 164
Query: 558 YHPTINVP 565
HP +P
Sbjct: 165 MHPRFELP 172
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 48.1 bits (113), Expect = 2e-05
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 445 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 502
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHI- 115
Query: 503 RRIPVLSPKPVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCTF 557
P+ P C++ P C +++ C Y C P C F
Sbjct: 116 ------DPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCKF 164
Query: 558 YHPTINVP 565
HP +P
Sbjct: 165 MHPRFELP 172
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 43.1 bits (100), Expect = 7e-04
Identities = 64/328 (19%), Positives = 120/328 (36%), Gaps = 79/328 (24%)
Query: 193 PLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSS 252
PL +P +T++ +P +E + ++Q + + I K D +S
Sbjct: 422 PLYTHRPPITISSKIQKPKVEAPKL-------------KVQHKFVEEIIEETKVEDEKSE 468
Query: 253 WVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVK-----K 307
+ E E+ S++E E+ E+E +K PV ++ +VK K
Sbjct: 469 MEEALTAITE-ELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEK 527
Query: 308 FNHDGEEEEEDDDYGSR--------------------------TGSISSSVSVPAKPERR 341
+G+EEEE++D G++ T + + AK E++
Sbjct: 528 EEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKK 587
Query: 342 PSLPPSKQANKNLIL---------KAISEAQESVTKTTNYSTVPQ--------------- 377
+ A K ++ KA S +S + S VP+
Sbjct: 588 VEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSP 647
Query: 378 -----KQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKE-----EETKGDSVEKNQA 427
K +P +P + + V+ ++++P P++E E KG+ E+ +
Sbjct: 648 VEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEK 707
Query: 428 EMSELSVAQKPEKLLERCKYWPACKNGD 455
E+ E +K EK E+ K P K +
Sbjct: 708 EVKEAPKEEKVEKKEEKPKDVPEKKKAE 735
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 43.1 bits (100), Expect = 7e-04
Identities = 64/328 (19%), Positives = 120/328 (36%), Gaps = 79/328 (24%)
Query: 193 PLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSS 252
PL +P +T++ +P +E + ++Q + + I K D +S
Sbjct: 46 PLYTHRPPITISSKIQKPKVEAPKL-------------KVQHKFVEEIIEETKVEDEKSE 92
Query: 253 WVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVK-----K 307
+ E E+ S++E E+ E+E +K PV ++ +VK K
Sbjct: 93 MEEALTAITE-ELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEK 151
Query: 308 FNHDGEEEEEDDDYGSR--------------------------TGSISSSVSVPAKPERR 341
+G+EEEE++D G++ T + + AK E++
Sbjct: 152 EEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKK 211
Query: 342 PSLPPSKQANKNLIL---------KAISEAQESVTKTTNYSTVPQ--------------- 377
+ A K ++ KA S +S + S VP+
Sbjct: 212 VEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSP 271
Query: 378 -----KQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKE-----EETKGDSVEKNQA 427
K +P +P + + V+ ++++P P++E E KG+ E+ +
Sbjct: 272 VEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEK 331
Query: 428 EMSELSVAQKPEKLLERCKYWPACKNGD 455
E+ E +K EK E+ K P K +
Sbjct: 332 EVKEAPKEEKVEKKEEKPKDVPEKKKAE 359
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 38.9 bits (89), Expect = 0.013
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 20/94 (21%)
Query: 436 QKPEKLLERCKYWPA---CKNGDECAYHHP---ISPCKAFPN--CKFAE-KCLFVH---- 482
Q+ EK E C Y+ C G+ C Y H ++ C F CK + C F H
Sbjct: 664 QRREKRKEYCMYYNRFGRCNRGERCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSK 723
Query: 483 ---PNCKYDAK--CTKPDCPFTH--VSRRIPVLS 509
P C Y K C+ +CP++H VSR+ V S
Sbjct: 724 EKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCS 757
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 38.5 bits (88), Expect = 0.017
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 252 SWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNHD 311
S+ Y G +P V + + Y F N+ + + E + P ++ + +
Sbjct: 662 SFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEE 721
Query: 312 GEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLIL--KAISEAQESVTKT 369
EEEE D+D TG I+ + S P S+P + + + L K I EA +
Sbjct: 722 EEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETP 781
Query: 370 TNYSTVPQKQTLPV 383
++ +P+K+T V
Sbjct: 782 QLFTVLPEKRTATV 795
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 38.1 bits (87), Expect = 0.022
Identities = 63/307 (20%), Positives = 114/307 (37%), Gaps = 40/307 (13%)
Query: 170 DVIDIKPEPDDLIDEDLNF--VQENPLSQKKPTVTLTYGSSRPSIEIYRPPASRNADSGV 227
D+I + E DD DED + + E PL +K+ T +P +I + + G
Sbjct: 112 DIISSEDEEDDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKVTHKEKEKGK 171
Query: 228 HLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSME 287
R + + ++ + H K ++ ET L + E+ + + EK E
Sbjct: 172 EKVREKEKPEKKATHKEK---IEKKEKPETKTLAK-------EQKKAKTAEKSEEKTKKE 221
Query: 288 DENFRKRKLPVVSSVVKVKKFNHDGEEEEED------------DDYGSRTGSISSSVSVP 335
+ ++ K+ ++ VK + +E+ED D Y I V
Sbjct: 222 VKGGKQEKVKQTAAKVKEVQKTPSKPKEKEDKEKAAVSKHEQKDQYAFCRYMIDIFVHGD 281
Query: 336 AKPERRPSLP---PSKQANKNLILKAISEAQE-----------SVTKTTNYSTVPQKQTL 381
KP + P++P P++QA++ E +E S TK + +K
Sbjct: 282 LKPGQSPAIPPPLPTEQASRPTPASPALEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEK 341
Query: 382 PVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQAEMSEL--SVAQKPE 439
A + +E QG + + K+E+ + K AE+ + +K E
Sbjct: 342 ETAIDVEKKEPGKASETKQGTVKIAAQAAAKKDEKKEDSKKTKKPAEVEQPKGKKQEKKE 401
Query: 440 KLLERCK 446
K +E K
Sbjct: 402 KHVEPAK 408
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 37.0 bits (84), Expect = 0.050
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 35/195 (17%)
Query: 279 NNSEKMSMEDENFRKRKLPVVSSVV-----------KVKKFNHDGEEEEEDDDYGSRTGS 327
++SE+ S +D+ ++K PV V K K + D + ED+ ++
Sbjct: 127 SSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPPKNQKPK 186
Query: 328 IS-----SSVSVPAKPERR-PSLPPSKQANKNLILKAIS---EAQESVTKTTNYSTVPQK 378
I+ + P KP R P + K A+ + + S +++E T TVP+K
Sbjct: 187 ITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPKKTVPKK 246
Query: 379 QTLPVAP--------RTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQAEMS 430
Q + AP R +S E+ ++ + Q + P+K + SV A
Sbjct: 247 QVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKK------PMKNKPGPYSSVPPPSAPPP 300
Query: 431 ELSV-AQKPEKLLER 444
+ S+ Q P+K +E+
Sbjct: 301 KKSLGTQPPKKAVEK 315
Score = 31.2 bits (69), Expect = 2.7
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 293 KRKLPVVSSVVK-VKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQAN 351
+RKL V K KK + E+ ++ G + +VPAK R LPP K A
Sbjct: 65 ERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAK---RVGLPPGKAAA 121
Query: 352 KNLILKAISEAQESVTKTTNYSTVPQKQTLPVA---------PRTRTSQEELLAEVVQGQ 402
K + E+ + + QK P A ++ S + +E +
Sbjct: 122 KASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPPK 181
Query: 403 SRTPRISPPIKEEETK 418
++ P+I+P + +TK
Sbjct: 182 NQKPKITPVTVKAQTK 197
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 37.0 bits (84), Expect = 0.050
Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 20/194 (10%)
Query: 245 KQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVK 304
K LD +S +++ + + ++N LE F R+ +E+ ++RK +
Sbjct: 2656 KVLDAES--MHDCVSVVKVSIVNHLE-----FLRDEE----LEERREKRRK----QLAEE 2700
Query: 305 VKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQE 364
K G+E++E+ D ++ + S+ S +P S + A SE++E
Sbjct: 2701 ETKITDKGKEDKENRDQSAQCTASKSNDSTEQNLSDGTPMPDSYPTTPSSTDAATSESKE 2760
Query: 365 SVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGDSVEK 424
++ + Q+ TLP P +EL + +G S T + P E E G +
Sbjct: 2761 TLG---TLQSSQQQPTLPTPPALGEVPQELQSPAGEGGSSTQLLMP--VEPEELGPTRPS 2815
Query: 425 NQAEMSELSVAQKP 438
+AE +++ ++ P
Sbjct: 2816 GEAETTQMELSPAP 2829
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 37.0 bits (84), Expect = 0.050
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 39/108 (36%)
Query: 445 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 502
CK+W CK GD C + H + P C F K C+ +C F HV
Sbjct: 68 CKHWLRGLCKKGDHCKFLHQYDLTR-MPECYFYSKF----------GDCSNKECSFLHVK 116
Query: 503 RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQC 550
PA K +CP+Y C+ C
Sbjct: 117 --------------------------PAFKSQDCPWYDQGFCKDGPLC 138
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 36.6 bits (83), Expect = 0.065
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 23/106 (21%)
Query: 415 EETKGDSVEK----NQAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKA 468
+E G EK +QA +++ +V +K +++ CKY+ C GD+C + H K
Sbjct: 166 QEEDGKPKEKQQHLSQAFINQHTVERKGKQI---CKYFLERKCIKGDQCKFDHDAEIEKK 222
Query: 469 FPNCKF--------AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 500
CKF E CL++H CK+ KC + + C F+H
Sbjct: 223 KEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
>gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens]
Length = 269
Score = 35.8 bits (81), Expect = 0.11
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 486 KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC---PF 538
+Y CT P C P T S R P L P P P +S RY C C P
Sbjct: 111 RYPFLCTLPHCFPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPA 170
Query: 539 YHPKHCRFNTQCTRPDC 555
P R+ CT P C
Sbjct: 171 TSPSCARYPFLCTSPHC 187
Score = 34.7 bits (78), Expect = 0.25
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 483 PNC-KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC- 536
P+C +Y CT P C P T S R P L P P P +S RY C C
Sbjct: 151 PSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCTSPHCF 210
Query: 537 --PFYHPKHCRFNTQCTRP 553
P P R+ CT P
Sbjct: 211 PLPGTSPSCARYPFLCTLP 229
>gi|169201475 PREDICTED: similar to hCG1798126, partial [Homo
sapiens]
Length = 190
Score = 35.8 bits (81), Expect = 0.11
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 486 KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC---PF 538
+Y CT P C P T S R P L P P P +S RY C C P
Sbjct: 32 RYPFLCTLPHCFPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPA 91
Query: 539 YHPKHCRFNTQCTRPDC 555
P R+ CT P C
Sbjct: 92 TSPSCARYPFLCTSPHC 108
Score = 34.7 bits (78), Expect = 0.25
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 483 PNC-KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC- 536
P+C +Y CT P C P T S R P L P P P +S RY C C
Sbjct: 72 PSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCTSPHCF 131
Query: 537 --PFYHPKHCRFNTQCTRP 553
P P R+ CT P
Sbjct: 132 PLPGTSPSCARYPFLCTLP 150
>gi|169190743 PREDICTED: similar to hCG1798126 [Homo sapiens]
Length = 269
Score = 35.8 bits (81), Expect = 0.11
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 486 KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC---PF 538
+Y CT P C P T S R P L P P P +S RY C C P
Sbjct: 111 RYPFLCTLPHCFPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPA 170
Query: 539 YHPKHCRFNTQCTRPDC 555
P R+ CT P C
Sbjct: 171 TSPSCARYPFLCTSPHC 187
Score = 34.7 bits (78), Expect = 0.25
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 483 PNC-KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC- 536
P+C +Y CT P C P T S R P L P P P +S RY C C
Sbjct: 151 PSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCTSPHCF 210
Query: 537 --PFYHPKHCRFNTQCTRP 553
P P R+ CT P
Sbjct: 211 PLPGTSPSCARYPFLCTLP 229
>gi|122937388 MAX gene associated [Homo sapiens]
Length = 3114
Score = 35.8 bits (81), Expect = 0.11
Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 346 PSKQANKNLILKAISEAQESVTKTTNYSTVP------------QKQTLPVAPRTRTSQEE 393
P+K + L ++ + Q +++ +T+YS P Q + + RT++S +
Sbjct: 858 PTKSTSYVRTLDSVLKKQSTISPSTSYSLKPHSVPPVSRKAKSQNRQATFSGRTKSSYKS 917
Query: 394 LLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQAEMSELSVAQKPEKLL-ERCKYWPACK 452
+L V + + + K + + +NQA + V E + ++ A +
Sbjct: 918 ILPYPVSPKQKYSHVILGDKVTKNSSGIISENQA--NNFVVPTLDENIFPKQISLRQAQQ 975
Query: 453 NGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP 512
+ P K+ E C + + D T + L KP
Sbjct: 976 QQQQQQGSRPPGLSKSQVKLMDLEDCALWEGKPRTYITEERADVSLTTLLTAQASLKTKP 1035
Query: 513 V----APPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTF 557
+ APP ++ CR C + P HCR RPDC F
Sbjct: 1036 IHTIIRKRAPPCNNDFCRLGCVCSSLALEKRQPAHCR------RPDCMF 1078
>gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens]
Length = 1430
Score = 35.8 bits (81), Expect = 0.11
Identities = 65/277 (23%), Positives = 104/277 (37%), Gaps = 35/277 (12%)
Query: 168 SEDVIDIKPEPDDLIDEDLNFVQENP-LSQKKPTVTLTYGSSR------PSIEIYRPPAS 220
S D + K E DL +++ V P KP T T R PS P S
Sbjct: 285 SSDGVSKKSEVKDLGPLEIHLVPYTPKFPTPKPRKTRTARLLRQKCVDTPSESTEEPGNS 344
Query: 221 RNADSGVHLNRLQFQQ----QQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPF 276
++ S + N L+ + QN + +Q+D +L LN + +
Sbjct: 345 DSSSSCLTENSLKINKISVLHQNVLCKQEQVDKM--------KLGNKSELNMESNSDAQD 396
Query: 277 FRNNSEKMSMEDENFRKRKLPV-VSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVP 335
N+ + M E +F K S + DG D G TG I +VS+
Sbjct: 397 LVNSQKAMCNETTSFEKMAPSFDKDSNLSSDSTTVDGSSMSLAVDEG--TGFIRCTVSMS 454
Query: 336 AKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYSTV----PQKQTLPVAPRTRTSQ 391
+ + + Q+ +NL + A +ESV K N + PQ+ +LP + +
Sbjct: 455 LPKQLKLTCNEHLQSGRNLGVSAPQMQKESVIKEENSLRIVPKKPQRHSLPATGVLKKAA 514
Query: 392 EELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQAE 428
E L E + S P EE++ S+E+N +
Sbjct: 515 SEELLE---------KSSYPSSEEKSSEKSLERNHLQ 542
>gi|21536423 amphiphysin isoform 2 [Homo sapiens]
Length = 653
Score = 35.4 bits (80), Expect = 0.14
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 12/201 (5%)
Query: 228 HLNRLQFQQQQNS--IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMS 285
HL LQ ++++ I A++ ++ V+E + E L SL F+ N + +S
Sbjct: 151 HLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVS 210
Query: 286 MEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLP 345
+ F K + + +V D ++ G+ + S ++ P PS
Sbjct: 211 SLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPSDSGPLRIAKTPSPPEEPSPL 270
Query: 346 PSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRT 405
PS A+ N L S A + P LP T+ Q+E + + +
Sbjct: 271 PSPTASPNHTLAPASPAPARPRSPSQTRKGPPVPPLPKVTPTKELQQENIISFFE-DNFV 329
Query: 406 PRIS---------PPIKEEET 417
P IS P +K+EET
Sbjct: 330 PEISVTTPSQNEVPEVKKEET 350
>gi|4502081 amphiphysin isoform 1 [Homo sapiens]
Length = 695
Score = 35.4 bits (80), Expect = 0.14
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 12/201 (5%)
Query: 228 HLNRLQFQQQQNS--IHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMS 285
HL LQ ++++ I A++ ++ V+E + E L SL F+ N + +S
Sbjct: 151 HLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVS 210
Query: 286 MEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLP 345
+ F K + + +V D ++ G+ + S ++ P PS
Sbjct: 211 SLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPSDSGPLRIAKTPSPPEEPSPL 270
Query: 346 PSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRT 405
PS A+ N L S A + P LP T+ Q+E + + +
Sbjct: 271 PSPTASPNHTLAPASPAPARPRSPSQTRKGPPVPPLPKVTPTKELQQENIISFFE-DNFV 329
Query: 406 PRIS---------PPIKEEET 417
P IS P +K+EET
Sbjct: 330 PEISVTTPSQNEVPEVKKEET 350
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 35.4 bits (80), Expect = 0.14
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 445 CKYW--PACKNGDECAYHHPISPCKAFPNCKF--------AEKCLFVHPN--CKY---DA 489
CKY+ C GD+C + H K CKF E C+++H CK+ A
Sbjct: 278 CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGA 337
Query: 490 KCTKPD-CPFTH 500
KC + D C F+H
Sbjct: 338 KCYQGDNCKFSH 349
Score = 33.5 bits (75), Expect = 0.55
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 439 EKLLERCKYWPA--CKNGDECAYHHPISPCKAF---PNCKFAEKCLFVHPNCKYDAK 490
EK E CK++ C G+ C Y H PCK + C + C F H + + K
Sbjct: 301 EKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETK 357
>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 35.0 bits (79), Expect = 0.19
Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 6/147 (4%)
Query: 292 RKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQAN 351
R K+ V K K +G+ E +D G G S + RR +PP++++
Sbjct: 268 RIEKIRQKGFVQKCKASGVEGQVVAEGNDGGGGAGRPSLGSEKKKEDPRRAQVPPTRESR 327
Query: 352 KNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPP 411
++ K + A + P+ TLP AP T ++ A V + T P
Sbjct: 328 VKVLRKLAATAPA----LPQPPSTPRATTLPPAPATTVTRSTSRAVTVAARPMTTTAFPT 383
Query: 412 IKEEETKGDSVEKNQAEMSELSVAQKP 438
+ T S +E+ A++P
Sbjct: 384 TQRPWTPSPS--HRPPTTTEVITARRP 408
>gi|41152074 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 35.0 bits (79), Expect = 0.19
Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 6/147 (4%)
Query: 292 RKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQAN 351
R K+ V K K +G+ E +D G G S + RR +PP++++
Sbjct: 268 RIEKIRQKGFVQKCKASGVEGQVVAEGNDGGGGAGRPSLGSEKKKEDPRRAQVPPTRESR 327
Query: 352 KNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPP 411
++ K + A + P+ TLP AP T ++ A V + T P
Sbjct: 328 VKVLRKLAATAPA----LPQPPSTPRATTLPPAPATTVTRSTSRAVTVAARPMTTTAFPT 383
Query: 412 IKEEETKGDSVEKNQAEMSELSVAQKP 438
+ T S +E+ A++P
Sbjct: 384 TQRPWTPSPS--HRPPTTTEVITARRP 408
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 35.0 bits (79), Expect = 0.19
Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 20/201 (9%)
Query: 262 EPEVLNSLEETYSPFFRNNSEKMSMEDENFR-------KRKLPVVSSVVKVKKFN--HDG 312
E E + LEE + E+ S +D F+ K ++ + S ++ + D
Sbjct: 417 EEEEASGLEEDEASGLEEEEEQTSEQDSTFQGHTLVDAKHEVEITSDGMETTFIDSVEDS 476
Query: 313 EEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPP---------SKQANKNLILKAISEAQ 363
E EEE++ S TG + ++ K RR P K+ K+ ++ E +
Sbjct: 477 ESEEEEEGKSSETGKVKTTSLTEKKASRRQKEIPFSYLVGDSGKKKLVKHQVVHKTQEEE 536
Query: 364 ESVTKTTNYSTVPQKQTLPVAP--RTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGDS 421
E+ T+ + P +P S +E S + ++ K EE K +
Sbjct: 537 ETAVPTSQGTGTPCLTLCLASPSKSLEMSHDEHKKHSHTNLSISTGVTKLKKTEEKKHRT 596
Query: 422 VEKNQAEMSELSVAQKPEKLL 442
+ + E + ++ E+ L
Sbjct: 597 LHTEELTSKEADLTEETEENL 617
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 35.0 bits (79), Expect = 0.19
Identities = 71/347 (20%), Positives = 123/347 (35%), Gaps = 35/347 (10%)
Query: 75 SVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTS 134
+ +TE SS +++ + + PS S ++P P A PE S +ST+
Sbjct: 1605 TASTEASSSTTAEGSSMTISTPSEGSPLL--------TSIPVSTTPVASPEA--STLSTT 1654
Query: 135 SQESKTTNVRQTYDDGAATRLMSTVKPL------REPAPSEDVIDIKPEPDDLIDEDLNF 188
+S + + T + T T P R P S I ++ P + ++
Sbjct: 1655 PVDSNSPVITSTEVSSSPTPAEGTSMPTSTYTEGRTPLTS---ITVRTTP--VASSAIST 1709
Query: 189 VQENPLSQKKPTVTLTYGSSRPSI-EIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQL 247
+ P+ P T T S P+ E P S ++ L + + L
Sbjct: 1710 LSTTPVDNSTPVTTSTEARSSPTTSEGTSMPNSTPSEGTTPLTSIP-------VSTTPVL 1762
Query: 248 DMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKK 307
++S + T V S E T SP +E S+ + P+ S+ V
Sbjct: 1763 SSEASTLSATPIDTSTPVTTSTEATSSP---TTAEGTSIPTSTLSEGMTPLTSTPVSHTL 1819
Query: 308 FNHDGEEEEEDDDYGSRTGSISSS-VSVPAKPERRPSLPPSKQANKNLILKAISEAQESV 366
+ S + ++S+ VS P S+ S + + L +I + +V
Sbjct: 1820 VANSEASTLSTTPVDSNSPVVTSTAVSSSPTPAEGTSIATSTPSEGSTALTSIPVSTTTV 1879
Query: 367 --TKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPP 411
++T ST P + PV + S A+ + TPR P
Sbjct: 1880 ASSETNTLSTTPAVTSTPVTTYAQVSSSPTTADGSSMPTSTPREGRP 1926
Score = 34.3 bits (77), Expect = 0.32
Identities = 73/363 (20%), Positives = 118/363 (32%), Gaps = 36/363 (9%)
Query: 78 TEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQE 137
T + SS T D VP S S G ++P P A PE S +ST+ +
Sbjct: 2488 TTSTEASSSPTTAEDIVVPI--STASEGSTLL--TSIPVSTTPVASPEA--STLSTTPVD 2541
Query: 138 SKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKP-EPDDLIDEDLNFVQENPLSQ 196
S + V T +AT T P + + P L + + + P+
Sbjct: 2542 SNSPVVTSTEISSSATSAEGTSMPTSTYSEGSTPLRSMPVSTKPLASSEASTLSTTPVDT 2601
Query: 197 KKPTVTLTYGSSRP------SIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQ 250
P T T SS P S+ I P + + + ++ + + S + +D +
Sbjct: 2602 SIPVTTSTETSSSPTTAKDTSMPISTPSEVSTSLTSILVSTMPVASSEASTLSTTPVDTR 2661
Query: 251 SSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSMEDENFRKRKLPVVSSVVKVKKFNH 310
+ TG P +E SM +R P+ + +V +
Sbjct: 2662 TLVTTSTGTSSSP---------------TTAEGSSMPTSTPGERSTPLTNILVSTTLLAN 2706
Query: 311 DGEEEEEDDDYGSRT-----GSISSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQES 365
+ T SSS + R S P IL +S +
Sbjct: 2707 SEASTLSTTPVDTSTPVTTSAEASSSPTTAEGTSMRISTPSDGSTPLTSIL--VSTLPVA 2764
Query: 366 VTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTP-RISPPIKEEETKGDSVEK 424
++ + ST ++PV T S AEV + TP S P+ V
Sbjct: 2765 SSEASTVSTTAVDTSIPVTTSTEASSSPTTAEVTSMPTSTPSETSTPLTSMPVNHTPVAS 2824
Query: 425 NQA 427
++A
Sbjct: 2825 SEA 2827
Score = 32.3 bits (72), Expect = 1.2
Identities = 72/375 (19%), Positives = 124/375 (33%), Gaps = 55/375 (14%)
Query: 73 LRSVTTEPSSLKSSD-----TNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARP--- 124
LRS+ L SS+ T D+++P S + + P++ PS
Sbjct: 2576 LRSMPVSTKPLASSEASTLSTTPVDTSIPVTTSTETSSSPTTAKDTSMPISTPSEVSTSL 2635
Query: 125 -----------EKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAP-SEDVI 172
S +ST+ +++T T + T + P P S +
Sbjct: 2636 TSILVSTMPVASSEASTLSTTPVDTRTLVTTSTGTSSSPTTAEGSSMPTSTPGERSTPLT 2695
Query: 173 DIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRP------SIEIYRPPASRNADSG 226
+I L + + + + P+ P T SS P S+ I P +
Sbjct: 2696 NILVSTTLLANSEASTLSTTPVDTSTPVTTSAEASSSPTTAEGTSMRISTPSDGSTPLTS 2755
Query: 227 VHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSEKMSM 286
+ ++ L + S + +D V S E + SP +E SM
Sbjct: 2756 ILVSTLPVASSEASTVSTTAVDTSIP------------VTTSTEASSSP---TTAEVTSM 2800
Query: 287 EDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPS--- 343
+ P+ S V NH E + S+ V+ K P+
Sbjct: 2801 PTSTPSETSTPLTSMPV-----NHTPVASSEAGTLSTTPVDTSTPVTTSTKASSSPTTAE 2855
Query: 344 ---LPPSKQANKNLILKAISEAQESV--TKTTNYSTVPQKQTLPVAPRTRTSQEELLAEV 398
+P S + + +L +I + V ++ + ST P ++PV T S AE
Sbjct: 2856 GIVVPISTASEGSTLLTSIPVSTTPVASSEASTLSTTPVDTSIPVTTSTEGSSSPTTAEG 2915
Query: 399 VQGQSRTP-RISPPI 412
TP +S P+
Sbjct: 2916 TSMPISTPSEVSTPL 2930
Score = 32.0 bits (71), Expect = 1.6
Identities = 60/312 (19%), Positives = 107/312 (34%), Gaps = 25/312 (8%)
Query: 113 AVPPLAIPSARPEKRDSRVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVI 172
+VP P A E S +ST+ +S T T + T P P+ +
Sbjct: 3226 SVPVSNTPVASSEA--SILSTTPVDSNTPLTTSTEASSSPPTAEGTSMPTSTPSEGSTPL 3283
Query: 173 DIKPEPDDLI-DEDLNFVQENPLSQKKPTVTLTYGSSRPSI-EIYRPPASRNADSGVHLN 230
P + + + + P P T + SS P I + P S ++ L
Sbjct: 3284 TSMPVSTTTVASSETSTLSTTPADTSTPVTTYSQASSSPPIADGTSMPTSTYSEGSTPLT 3343
Query: 231 RLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNNSE--KMSMED 288
+ F + ++S + T V S E + SP + S +
Sbjct: 3344 NMSFS-------TTPVVSSEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSE 3396
Query: 289 ENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPS- 347
+PV ++ V + N + + + + SSS ++ SLP S
Sbjct: 3397 GTTPLASMPVSTTPVVSSEVNTLSTTPVDSNTLVTTSTEASSSPTIA----EGTSLPTST 3452
Query: 348 -KQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQ------ 400
+ + L + +S + ++ + ST P + PV + T+ AEV
Sbjct: 3453 TSEGSTPLSIMPLSTTPVASSEASTLSTTPVDTSTPVTTSSPTNSSPTTAEVTSMPTSTA 3512
Query: 401 GQSRTPRISPPI 412
G+ TP + P+
Sbjct: 3513 GEGSTPLTNMPV 3524
Score = 30.0 bits (66), Expect = 6.1
Identities = 59/336 (17%), Positives = 115/336 (34%), Gaps = 15/336 (4%)
Query: 69 VLDKLRSVTTEPSSLKSSDTNIFDSNV-PSNKSNFSRGDERRHEAAVPPLAIPSARPEKR 127
V + +++T P + T ++++ P+ S E P ++P +
Sbjct: 3353 VSSEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSEGTTPLASMPVSTTPVV 3412
Query: 128 DSRVSTSSQ---ESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKP-EPDDLID 183
S V+T S +S T T + T T P + + I P +
Sbjct: 3413 SSEVNTLSTTPVDSNTLVTTSTEASSSPTIAEGTSLPTSTTSEGSTPLSIMPLSTTPVAS 3472
Query: 184 EDLNFVQENPLSQKKPTVTLTYGSSRPSI-EIYRPPASRNADSGVHLNRLQFQQQQNSIH 242
+ + + P+ P T + +S P+ E+ P S + L + +
Sbjct: 3473 SEASTLSTTPVDTSTPVTTSSPTNSSPTTAEVTSMPTSTAGEGSTPLTNMP-------VS 3525
Query: 243 AAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPF-FRNNSEKMSMEDENFRKRKLPVVSS 301
++S + T V +S + + SP + + +MS E ++SS
Sbjct: 3526 TTPVASSEASTLSTTPVDSNTFVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSS 3585
Query: 302 VVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQANKNLILKAISE 361
D T + S+S P + P PS + + L + +S
Sbjct: 3586 TYVTSSEASTPSTPSVDRSTPVTTSTQSNSTPTPPEVITLPMSTPS-EVSTPLTIMPVST 3644
Query: 362 AQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAE 397
++++ ST+P + PV T+ S + E
Sbjct: 3645 TSVTISEAGTASTLPVDTSTPVITSTQVSSSPVTPE 3680
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 34.7 bits (78), Expect = 0.25
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 288 DENFRKRKLPVVSSVVKVKKF----NHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPS 343
+E + ++P V S ++ ++ N + E EEE++ YG + +S+S P PS
Sbjct: 2697 EEEEEEERVPEVESEGELAQWEDFSNSNSETEEEEEPYGLQVARVSNS----RDPSLTPS 2752
Query: 344 LPPSKQANKNLILKAISEAQESVTKTTNY 372
+ P + K I I QE T+ +NY
Sbjct: 2753 IGPVSRGMKESISHKI--RQEKGTRASNY 2779
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,045,808
Number of Sequences: 37866
Number of extensions: 1259632
Number of successful extensions: 6194
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 5909
Number of HSP's gapped (non-prelim): 378
length of query: 579
length of database: 18,247,518
effective HSP length: 108
effective length of query: 471
effective length of database: 14,157,990
effective search space: 6668413290
effective search space used: 6668413290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.