Guide to the Human Genome
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Name: MGA Sequence: fasta or formatted (3114aa) NCBI GI: 122937388
Description:

MAX gene associated

Referenced in:

T Box Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        173           3
 C cysteine            1.2         38           1
 D aspartate           5.5        171           3
 E glutamate           7.2        225           4
 F phenylalanine       2.4         76           2
 G glycine             6.0        188           2
 H histidine           1.9         58           1
 I isoleucine          4.1        129           2
 K lysine              7.9        246           3
 L leucine             8.6        269           3
 M methionine          1.8         57           2
 N asparagine          4.2        130           2
 P proline             7.1        221           2
 Q glutamine           5.1        158           8
 R arginine            4.5        139           4
 S serine             11.4        355           5
 T threonine           6.5        202           4
 V valine              6.6        204           3
 W tryptophan          0.6         19           2
 Y tyrosine            1.8         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MAX gene associated 
TBX6                  0.037   T-box 6 
TBX2                  0.030   T-box 2 
TBX3                  0.030   T-box 3 protein isoform 1 
TBX5                  0.030   T-box 5 isoform 2 
TBX5                  0.030   T-box 5 isoform 3 
TBX5                  0.030   T-box 5 isoform 1 
TBX5                  0.030   T-box 5 isoform 1 
TBX4                  0.030   T-box 4 
TBX18                 0.029   T-box 18 
TBX15                 0.029   T-box 15 
TBX1                  0.028   T-box 1 isoform B 
TBX3                  0.028   T-box 3 protein isoform 2 
TBX20                 0.028   T-box transcription factor TBX20 
TBX1                  0.028   T-box 1 isoform C 
TBX1                  0.028   T-box 1 isoform A 
TBX10                 0.027   T-box 10 
TBX21                 0.027   T-box 21 
TBR1                  0.026   T-box, brain, 1 
TBX22                 0.026   T-box 22 isoform 1 
TBX22                 0.026   T-box 22 isoform 1 
EOMES                 0.025   eomesodermin 
T                     0.024   transcription factor T 
TBX19                 0.023   T-box 19 
TBX22                 0.022   T-box 22 isoform 2 
MUC2                  0.009   mucin 2 precursor 
LOC100294420          0.009   PREDICTED: similar to mucin 2 
MUC17                 0.009   mucin 17 
MUC5AC                0.007   mucin 5AC 
LOC730474             0.007   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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