L1TD1 6334

Name: L1TD1	Sequence: fasta or formatted (865aa)		NCBI GI: 157694505
Description: LINE-1 type transposase domain containing 1		Referenced in: DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.6 31 1 C cysteine 0.9 8 1 D aspartate 6.4 55 2 E glutamate 15.6 135 7 F phenylalanine 3.4 29 1 G glycine 4.7 41 2 H histidine 1.7 15 1 I isoleucine 5.7 49 2 K lysine 10.2 88 3 L leucine 9.2 80 2 M methionine 2.3 20 1 N asparagine 4.2 36 2 P proline 2.1 18 1 Q glutamine 3.1 27 2 R arginine 5.1 44 2 S serine 9.5 82 3 T threonine 6.1 53 2 V valine 4.9 42 2 W tryptophan 0.3 3 1 Y tyrosine 1.0 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LINE-1 type transposase domain containing 1 LOC100129791 0.085 PREDICTED: hypothetical protein LOC100129791 LOC100129791 0.085 PREDICTED: hypothetical protein LOC100129791 LOC100129791 0.084 PREDICTED: hypothetical protein LOC100129791 WDR87 0.034 NYD-SP11 protein GCC2 0.030 GRIP and coiled-coil domain-containing 2 MYH11 0.028 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.028 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.028 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.028 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... MYH9 0.028 myosin, heavy polypeptide 9, non-muscle MYH10 0.028 myosin, heavy polypeptide 10, non-muscle CLIP1 0.028 restin isoform a EIF5B 0.027 eukaryotic translation initiation factor 5B LOC283685 0.025 PREDICTED: golgi autoantigen, golgin subfamily a-li... GOLGA4 0.025 golgi autoantigen, golgin subfamily a, 4 KTN1 0.025 kinectin 1 isoform a KTN1 0.025 kinectin 1 isoform c KTN1 0.025 kinectin 1 isoform a LOC440243 0.024 PREDICTED: Putative golgin subfamily A member 6-lik... NEFM 0.023 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.023 neurofilament, medium polypeptide 150kDa isoform 2 ... GOLGB1 0.022 golgi autoantigen, golgin subfamily b, macrogolgin ... CLIP1 0.022 restin isoform b MYH1 0.022 myosin, heavy chain 1, skeletal muscle, adult [Homo... EEA1 0.022 early endosome antigen 1, 162kD CENPE 0.021 centromere protein E PELP1 0.021 proline, glutamic acid and leucine rich protein 1 [... MYO18A 0.021 myosin 18A isoform b MYO18A 0.021 myosin 18A isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.