Guide to the Human Genome
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Name: ZC3H6 Sequence: fasta or formatted (1189aa) NCBI GI: 118766347
Description:

zinc finger CCCH-type domain containing 6

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         51           2
 C cysteine            1.0         12           1
 D aspartate           6.6         79           4
 E glutamate           6.7         80           4
 F phenylalanine       3.4         40           1
 G glycine             8.2         98           2
 H histidine           3.9         46           2
 I isoleucine          3.1         37           1
 K lysine              8.4        100           3
 L leucine             6.6         78           2
 M methionine          1.1         13           1
 N asparagine          4.3         51           2
 P proline             9.7        115           3
 Q glutamine           5.7         68           3
 R arginine            4.9         58           2
 S serine             10.3        122           3
 T threonine           4.8         57           2
 V valine              3.9         46           2
 W tryptophan          0.5          6           1
 Y tyrosine            2.7         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type domain containing 6 
ZC3H4                 0.226   zinc finger CCCH-type containing 4 
ZC3H8                 0.095   zinc finger CCCH-type containing 8 
MKRN2                 0.014   makorin ring finger protein 2 
WDR33                 0.014   WD repeat domain 33 isoform 1 
COL3A1                0.014   collagen type III alpha 1 preproprotein 
MKRN1                 0.013   makorin ring finger protein 1 isoform 2 
MKRN1                 0.013   makorin ring finger protein 1 isoform 1 
CPSF4                 0.013   cleavage and polyadenylation specific factor 4, 30k...
CPSF4                 0.013   cleavage and polyadenylation specific factor 4, 30kDa...
YLPM1                 0.013   YLP motif containing 1 
COL4A1                0.013   alpha 1 type IV collagen preproprotein 
COL18A1               0.013   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.013   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.013   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
CPSF4L                0.012   cleavage and polyadenylation specific factor 4-like...
COL8A1                0.012   alpha 1 type VIII collagen precursor 
COL8A1                0.012   alpha 1 type VIII collagen precursor 
COL13A1               0.012   alpha 1 type XIII collagen isoform 20 
COL13A1               0.012   alpha 1 type XIII collagen isoform 18 
COL13A1               0.012   alpha 1 type XIII collagen isoform 17 
COL13A1               0.012   alpha 1 type XIII collagen isoform 16 
COL13A1               0.012   alpha 1 type XIII collagen isoform 14 
COL13A1               0.012   alpha 1 type XIII collagen isoform 11 
COL13A1               0.012   alpha 1 type XIII collagen isoform 10 
COL13A1               0.012   alpha 1 type XIII collagen isoform 9 
COL13A1               0.012   alpha 1 type XIII collagen isoform 5 
COL13A1               0.012   alpha 1 type XIII collagen isoform 4 
COL13A1               0.012   alpha 1 type XIII collagen isoform 3 
COL13A1               0.012   alpha 1 type XIII collagen isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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