Guide to the Human Genome
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Name: CCDC80 Sequence: fasta or formatted (950aa) NCBI GI: 41152074
Description:

steroid-sensitive protein 1

Referenced in:

Coiled-Coil Proteins
Additional Interaction Domain Families

Other entries for this name:
alt mRNA [950aa] steroid-sensitive protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         53           2
 C cysteine            0.7          7           1
 D aspartate           4.6         44           2
 E glutamate           7.7         73           2
 F phenylalanine       2.7         26           2
 G glycine             6.1         58           4
 H histidine           2.3         22           2
 I isoleucine          3.8         36           1
 K lysine              8.5         81           4
 L leucine             7.7         73           3
 M methionine          3.1         29           2
 N asparagine          2.7         26           2
 P proline             8.0         76           2
 Q glutamine           4.7         45           2
 R arginine            8.6         82           3
 S serine              7.9         75           3
 T threonine           5.1         48           3
 V valine              6.0         57           2
 W tryptophan          0.8          8           1
 Y tyrosine            3.3         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   steroid-sensitive protein 1 
CCDC80                1.000   steroid-sensitive protein 1 
SRPX2                 0.024   sushi-repeat-containing protein, X-linked 2 
SRPX                  0.024   sushi-repeat-containing protein, X-linked 
SRRM1                 0.023   serine/arginine repetitive matrix 1 
MAP7D1                0.018   MAP7 domain containing 1 
NES                   0.017   nestin 
MAP1B                 0.017   microtubule-associated protein 1B 
MUC2                  0.017   mucin 2 precursor 
RBBP6                 0.017   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.017   retinoblastoma-binding protein 6 isoform 1 
MUC7                  0.016   mucin 7, secreted precursor 
MUC7                  0.016   mucin 7, secreted precursor 
MUC7                  0.016   mucin 7, secreted precursor 
NEFH                  0.016   neurofilament, heavy polypeptide 200kDa 
USP8                  0.016   ubiquitin specific peptidase 8 
USP8                  0.016   ubiquitin specific peptidase 8 
USP8                  0.016   ubiquitin specific peptidase 8 
MAP1A                 0.015   microtubule-associated protein 1A 
LOC284297             0.015   hypothetical protein LOC284297 
LOC100294364          0.015   PREDICTED: hypothetical protein 
MAP7                  0.015   microtubule-associated protein 7 
LOC100294088          0.014   PREDICTED: hypothetical protein, partial 
PPIG                  0.014   peptidylprolyl isomerase G 
CHAF1A                0.014   chromatin assembly factor 1, subunit A (p150) 
FNDC1                 0.014   fibronectin type III domain containing 1 
TRDN                  0.014   triadin 
MUC6                  0.014   mucin 6, gastric 
CWC22                 0.014   CWC22 spliceosome-associated protein homolog 
AP3D1                 0.014   adaptor-related protein complex 3, delta 1 subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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