Guide to the Human Genome
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Name: ZC3H14 Sequence: fasta or formatted (306aa) NCBI GI: 50541967
Description:

zinc finger CCCH-type containing 14 isoform 4

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [735aa] zinc finger CCCH-type containing 14 isoform 5
alt prot [730aa] zinc finger CCCH-type containing 14 isoform 6
alt prot [736aa] zinc finger CCCH-type containing 14 isoform 1
alt prot [579aa] zinc finger CCCH-type containing 14 isoform 2
alt prot [571aa] zinc finger CCCH-type containing 14 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         17           2
 C cysteine            5.6         17           1
 D aspartate           3.9         12           1
 E glutamate           7.2         22           2
 F phenylalanine       4.2         13           1
 G glycine             1.6          5           1
 H histidine           2.9          9           2
 I isoleucine          4.9         15           2
 K lysine              7.8         24           2
 L leucine             7.5         23           2
 M methionine          2.6          8           1
 N asparagine          4.6         14           1
 P proline            10.1         31           2
 Q glutamine           4.2         13           2
 R arginine            5.2         16           2
 S serine              8.8         27           3
 T threonine           5.2         16           2
 V valine              4.6         14           1
 W tryptophan          0.7          2           1
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type containing 14 isoform 4 
ZC3H14                0.594   zinc finger CCCH-type containing 14 isoform 3 
ZC3H14                0.537   zinc finger CCCH-type containing 14 isoform 5 [Homo...
ZC3H14                0.534   zinc finger CCCH-type containing 14 isoform 6 [Homo...
ZC3H14                0.532   zinc finger CCCH-type containing 14 isoform 2 
ZC3H14                0.529   zinc finger CCCH-type containing 14 isoform 1 
L1TD1                 0.042   LINE-1 type transposase domain containing 1 
CPSF4                 0.037   cleavage and polyadenylation specific factor 4, 30k...
CPSF4                 0.037   cleavage and polyadenylation specific factor 4, 30kDa...
ZC3H3                 0.024   zinc finger CCCH-type containing 3 
ZC3H8                 0.021   zinc finger CCCH-type containing 8 
ZC3H6                 0.019   zinc finger CCCH-type domain containing 6 
CPSF4L                0.019   cleavage and polyadenylation specific factor 4-like...
LOC642622             0.018   PREDICTED: similar to hCG1798126 
LOC642622             0.018   PREDICTED: similar to hCG1798126, partial 
LOC642622             0.018   PREDICTED: similar to hCG1798126 
VWDE                  0.011   von Willebrand factor D and EGF domains 
MKRN1                 0.011   makorin ring finger protein 1 isoform 2 
MKRN1                 0.011   makorin ring finger protein 1 isoform 1 
MGA                   0.011   MAX gene associated 
LOC100131696          0.011   PREDICTED: keratin associated protein 
LOC100288060          0.011   PREDICTED: hypothetical protein XP_002343557 
LENG9                 0.011   leukocyte receptor cluster (LRC) member 9 
TRIP11                0.011   thyroid hormone receptor interactor 11 
TRAF3IP1              0.010   TNF receptor-associated factor 3 interacting protei...
TRAF3IP1              0.010   TNF receptor-associated factor 3 interacting protein...
CENPE                 0.010   centromere protein E 
MKRN2                 0.010   makorin ring finger protein 2 
ARHGAP25              0.010   Rho GTPase activating protein 25 isoform a 
ARHGAP25              0.010   Rho GTPase activating protein 25 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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