Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4826828
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826828 myelodysplasia syndrome protein 1 [Homo sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826828 myelodysplasia syndrome protein 1 [Homo sapiens] 353 5e-98
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 129 9e-31
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 129 9e-31
gi|208022698 retinoblastoma protein-binding zinc finger protein ... 47 1e-05
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 47 1e-05
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 47 1e-05
gi|41349476 PR domain containing 5 [Homo sapiens] 42 3e-04
gi|15042949 PR domain containing 12 [Homo sapiens] 41 4e-04
gi|41349474 PR domain containing 4 [Homo sapiens] 36 0.014
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 35 0.031
gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens] 34 0.068
gi|239757437 PREDICTED: hypothetical protein [Homo sapiens] 33 0.089
gi|239751954 PREDICTED: hypothetical protein [Homo sapiens] 33 0.089
gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo ... 33 0.089
gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens] 33 0.089
gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens] 33 0.089
gi|147905620 PR domain containing 9 [Homo sapiens] 33 0.12
gi|209529739 hypothetical protein LOC100132247 [Homo sapiens] 32 0.34
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 32 0.34
gi|157074225 nuclear pore complex interacting protein-like 3 [Ho... 31 0.58
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 30 0.76
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 30 0.76
gi|6912438 integrin beta 1 binding protein 2 [Homo sapiens] 30 0.76
gi|23308699 transcription factor MAFB [Homo sapiens] 30 0.99
gi|210031233 PR domain containing 6 [Homo sapiens] 30 0.99
gi|118918413 MICAL C-terminal like [Homo sapiens] 30 0.99
gi|148596994 nuclear pore complex interacting protein [Homo sapi... 30 1.3
gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo sap... 29 1.7
gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo sap... 29 1.7
gi|42516570 thioredoxin domain-containing 2 isoform 1 [Homo sapi... 29 1.7
>gi|4826828 myelodysplasia syndrome protein 1 [Homo sapiens]
Length = 169
Score = 353 bits (905), Expect = 5e-98
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MRSKGRARKLATNNECVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKE 60
MRSKGRARKLATNNECVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKE
Sbjct: 1 MRSKGRARKLATNNECVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKE 60
Query: 61 GSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDP 120
GSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDP
Sbjct: 61 GSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDP 120
Query: 121 SYGWEVHLPRSRRVSVHSWLYLGKRSSDVGIAFSQADVYMPGLQCAFLS 169
SYGWEVHLPRSRRVSVHSWLYLGKRSSDVGIAFSQADVYMPGLQCAFLS
Sbjct: 121 SYGWEVHLPRSRRVSVHSWLYLGKRSSDVGIAFSQADVYMPGLQCAFLS 169
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 129 bits (325), Expect = 9e-31
Identities = 70/135 (51%), Positives = 89/135 (65%), Gaps = 16/135 (11%)
Query: 1 MRSKGRARKLATNNECVYGNYPEIPLEEMPDADGVASTPSLNIQE----------PCSPA 50
MRSK RARKLA ++ V N E P+ D +AS + + E P SP
Sbjct: 1 MRSKARARKLAKSDGDVVNNMYE------PNRDLLASHSAEDEAEDSAMSPIPVGPPSPF 54
Query: 51 TSSEAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYV 110
+SE FTPKEGSPY+AP+YIP+DIPIPA+FELRES++PGAGLG+W KRK+E GE+ GP V
Sbjct: 55 PTSEDFTPKEGSPYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCV 114
Query: 111 GEQRSNLKDPSYGWE 125
R+ K+ +GWE
Sbjct: 115 VVPRAAAKETDFGWE 129
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 129 bits (325), Expect = 9e-31
Identities = 70/135 (51%), Positives = 89/135 (65%), Gaps = 16/135 (11%)
Query: 1 MRSKGRARKLATNNECVYGNYPEIPLEEMPDADGVASTPSLNIQE----------PCSPA 50
MRSK RARKLA ++ V N E P+ D +AS + + E P SP
Sbjct: 1 MRSKARARKLAKSDGDVVNNMYE------PNRDLLASHSAEDEAEDSAMSPIPVGPPSPF 54
Query: 51 TSSEAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYV 110
+SE FTPKEGSPY+AP+YIP+DIPIPA+FELRES++PGAGLG+W KRK+E GE+ GP V
Sbjct: 55 PTSEDFTPKEGSPYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCV 114
Query: 111 GEQRSNLKDPSYGWE 125
R+ K+ +GWE
Sbjct: 115 VVPRAAAKETDFGWE 129
>gi|208022698 retinoblastoma protein-binding zinc finger protein
isoform d [Homo sapiens]
Length = 226
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 76 IPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGE--QRSNLKDPSYGWEVHLP 129
+P E L S + +G+W + I G+KFGP+VG+ +RS +K+ Y WEV+ P
Sbjct: 26 LPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYP 81
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 76 IPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGE--QRSNLKDPSYGWEVHLP 129
+P E L S + +G+W + I G+KFGP+VG+ +RS +K+ Y WEV+ P
Sbjct: 26 LPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYP 81
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 76 IPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGE--QRSNLKDPSYGWEVHLP 129
+P E L S + +G+W + I G+KFGP+VG+ +RS +K+ Y WEV+ P
Sbjct: 26 LPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYP 81
>gi|41349476 PR domain containing 5 [Homo sapiens]
Length = 630
Score = 41.6 bits (96), Expect = 3e-04
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 76 IPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQR 114
+P F L+ S + G+G++T R++ GEKFGP+ GE+R
Sbjct: 6 VPDRFSLKSSRVQD-GMGLYTARRVRKGEKFGPFAGEKR 43
>gi|15042949 PR domain containing 12 [Homo sapiens]
Length = 367
Score = 41.2 bits (95), Expect = 4e-04
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 50 ATSSEAFTPKE-GSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGP 108
A+ AFT + + + + +PAE + +S++PG GLGI++K I+ G + GP
Sbjct: 57 ASPKTAFTAEVLAQSFSGEVQKLSSLVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGP 116
Query: 109 YVG-----EQRSNLKDPSYGWEV 126
+ G E K+ + WEV
Sbjct: 117 FTGRVIAPEHVDICKNNNLMWEV 139
>gi|41349474 PR domain containing 4 [Homo sapiens]
Length = 801
Score = 36.2 bits (82), Expect = 0.014
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 63 PYKAPIYIPDDIPI--------PAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQR 114
P P+ D PI P + LR+S + GA +G+WT I V FGP +G+Q
Sbjct: 389 PEHGPVTFVPDTPIESRARLSLPKQLVLRQS-IVGAEVGVWTGETIPVRTCFGPLIGQQS 447
Query: 115 SNLK 118
+++
Sbjct: 448 HSME 451
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 35.0 bits (79), Expect = 0.031
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 22 PEIPLEEMPDADGVASTPSLN---IQEPCSPATSSEAFTPKEGS-PYKAPIYIPDDIPIP 77
P +P+ + G STP+L P T + FTP P P IP PIP
Sbjct: 353 PSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIPTSAPIP 412
Query: 78 AEFELRESNMPGA 90
A F L P A
Sbjct: 413 ASFSLSRVCFPAA 425
>gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]
Length = 574
Score = 33.9 bits (76), Expect = 0.068
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAP----IYIPDDIPIPAE 79
+ LE +P D SL + EP P + F P +P AP +P P PAE
Sbjct: 291 VSLEPLPSLD--VGPESLRVVEPKDPGGPLQGFYPPASAPTSAPAPVSAPVPSQAPAPAE 348
Query: 80 FEL 82
EL
Sbjct: 349 AEL 351
>gi|239757437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 33.5 bits (75), Expect = 0.089
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 38 TPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLG 93
+P L PC PA + +TPK + P+ I + + +P L S PG GLG
Sbjct: 71 SPDLESHGPC-PAKCNSPWTPKPDQTLQTPVGILNPLLMPHPLGLSGSLRPGPGLG 125
>gi|239751954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 33.5 bits (75), Expect = 0.089
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 38 TPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLG 93
+P L PC PA + +TPK + P+ I + + +P L S PG GLG
Sbjct: 71 SPDLESHGPC-PAKCNSPWTPKPDQTLQTPVGILNPLLMPHPLGLSGSLRPGPGLG 125
>gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo
sapiens]
Length = 503
Score = 33.5 bits (75), Expect = 0.089
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 38 TPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLG 93
+P L PC PA + +TPK + P+ I + + +P L S PG GLG
Sbjct: 71 SPDLESHGPC-PAKCNSPWTPKPDQTLQTPVGILNPLLMPHPLGLSGSLRPGPGLG 125
>gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens]
Length = 492
Score = 33.5 bits (75), Expect = 0.089
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 74 IPIPAEFELRESNMPGAGLGIWTKRK-IEVGEKFGPYVGE--QRSNLKDPSYGW 124
+ +P + S +P AGLG+W + + +G FGPY G + + Y W
Sbjct: 240 LSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSW 293
>gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens]
Length = 171
Score = 33.5 bits (75), Expect = 0.089
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 74 IPIPAEFELRESNMPGAGLGIWTKRK-IEVGEKFGPYVGE--QRSNLKDPSYGW 124
+ +P + S +P AGLG+W + + +G FGPY G + + Y W
Sbjct: 34 LSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSW 87
>gi|147905620 PR domain containing 9 [Homo sapiens]
Length = 894
Score = 33.1 bits (74), Expect = 0.12
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 74 IPIPAEFELRESNMPGAGLGIWTKRK-IEVGEKFGPYVGE--QRSNLKDPSYGW 124
+ +P + S +P AGLG+W + + +G FGPY G + + Y W
Sbjct: 240 LSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANNGYSW 293
>gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]
Length = 1133
Score = 31.6 bits (70), Expect = 0.34
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYIPDDIPIPAEFELR 83
+P P AD TP+ ++ P P+ TP E P D+I PAE LR
Sbjct: 480 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTALPPSADDNIKTPAE-RLR 538
Query: 84 ESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWE----VHLPRSRRVSVHSW 139
P A + T + ++ N+K P++ + HLP + H
Sbjct: 539 GPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAFHPQRMISRHLPSVSSLPFHPQ 598
Query: 140 LY 141
L+
Sbjct: 599 LH 600
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 396 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 455
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 438 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 497
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 893 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 952
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 935 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 994
Score = 27.3 bits (59), Expect = 6.4
Identities = 34/125 (27%), Positives = 39/125 (31%), Gaps = 10/125 (8%)
Query: 10 LATNNECVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIY 69
L T ECV P P AD TP + P P+ TP E P
Sbjct: 282 LKTPPECVLTPLP-------PSADDNLKTPPECVLTPLPPSADDNLKTPPECLLTPLPPS 334
Query: 70 IPDDIPIPAE---FELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWEV 126
D++ P E L S +P A K P NLK PS
Sbjct: 335 ADDNLKTPPECLLTPLPPSALPSAPPSADDNLKTRAECLLHPLPPSADDNLKTPSERQLT 394
Query: 127 HLPRS 131
LP S
Sbjct: 395 PLPPS 399
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 31.6 bits (70), Expect = 0.34
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 953 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPTSADDNIKTPAE 1012
Score = 31.2 bits (69), Expect = 0.44
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ +++ P P+ TP E P AP D+I PAE
Sbjct: 400 LPPSAPPSADDNIKTPAEHLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 459
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 442 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 501
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 911 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 970
Score = 28.1 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ +++ P P+ TP E P AP D+I AE
Sbjct: 484 LPPSAPPSADDNIKTPAEHLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTTAE 543
Score = 28.1 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD T + +++ P P+ TP E P AP D+I PAE
Sbjct: 526 LPPSAPPSADDNIKTTAEHLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 585
Score = 27.7 bits (60), Expect = 4.9
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD T + ++ P P+ TP E P AP D+I PAE
Sbjct: 358 LPPSAPPSADDNIKTTAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 417
>gi|157074225 nuclear pore complex interacting protein-like 3 [Homo
sapiens]
Length = 678
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 396 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 455
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 438 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 497
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 24 IPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGS----PYKAPIYIPDDIPIPAE 79
+P P AD TP+ ++ P P+ TP E P AP D+I PAE
Sbjct: 480 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 539
Score = 27.3 bits (59), Expect = 6.4
Identities = 34/125 (27%), Positives = 39/125 (31%), Gaps = 10/125 (8%)
Query: 10 LATNNECVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIY 69
L T ECV P P AD TP + P P+ TP E P
Sbjct: 282 LKTPPECVLTPLP-------PSADDNLKTPPECVLTPLPPSADDNLKTPPECLLTPLPPS 334
Query: 70 IPDDIPIPAE---FELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWEV 126
D++ P E L S +P A K P NLK PS
Sbjct: 335 ADDNLKTPPECLLTPLPPSALPSAPPSADDNLKTRAECLLHPLPPSADDNLKTPSERQLT 394
Query: 127 HLPRS 131
LP S
Sbjct: 395 PLPPS 399
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 30.4 bits (67), Expect = 0.76
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 22 PEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPK-EGSPYKAPIYIPDDIP 75
P PLEE P + S PS ++ P SP + +P E SP P P+++P
Sbjct: 511 PFSPLEESPLSPPEESPPSPALETPLSPPPEASPLSPPFEESPLSPP---PEELP 562
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 30.4 bits (67), Expect = 0.76
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 36 ASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPG------ 89
A PSL Q+P P TS E+ P S + +P+ IP + I R S+ P
Sbjct: 1181 APEPSLFFQDP--PGTSMESLAPSTDSLHGSPVLIP-QVCIGHRDAPRASSPPRHPPSDL 1237
Query: 90 AGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWEVHLPRSRRVS 135
A L G + GE R NL+ Y LP RR++
Sbjct: 1238 AFLAPSPSPGSSGGSRGSAPPGETRHNLEREEYTVLADLPPPRRLA 1283
>gi|6912438 integrin beta 1 binding protein 2 [Homo sapiens]
Length = 347
Score = 30.4 bits (67), Expect = 0.76
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 16 CVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPI-YIPDDI 74
C G + L E P +G A++ SL Q+P + S +E + P+ +P +I
Sbjct: 59 CTMGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLNI 118
Query: 75 PIPAEFELRESNM---PGAGL 92
E L + + PGAGL
Sbjct: 119 SQALEMALEQKELDQEPGAGL 139
>gi|23308699 transcription factor MAFB [Homo sapiens]
Length = 323
Score = 30.0 bits (66), Expect = 0.99
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 22 PEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIY 69
P P + A V+STP + PCS SS +F+P E + +Y
Sbjct: 42 PGRPCTRLQPAGSVSSTP---LSTPCSSVPSSPSFSPTEQKTHLEDLY 86
>gi|210031233 PR domain containing 6 [Homo sapiens]
Length = 595
Score = 30.0 bits (66), Expect = 0.99
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 63 PYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVG-------EQRS 115
P + P ++ D +P E L S +PG GI ++I+ G GP+ G Q
Sbjct: 234 PPELPEWLRD---LPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAG 290
Query: 116 NLKDPSYGWEVH 127
+++ + WE++
Sbjct: 291 AVRNTQHLWEIY 302
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 30.0 bits (66), Expect = 0.99
Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 37/116 (31%)
Query: 36 ASTPSLNIQEPCSPATSSEAFTPK---------EGSPYKAPIYIP--------------- 71
+S P + EP S + P +G+P + P+Y+P
Sbjct: 39 SSPPQMTASEPLSQVSRGHPSPPTPNFRRRAVAQGAPREIPLYLPHHPKPEWAEYCLVSP 98
Query: 72 --DDIPIPAEFELRESNMPGAGLG-----------IWTKRKIEVGEKFGPYVGEQR 114
D + PAE E A LG IW K + G++ P GE R
Sbjct: 99 GEDGLSDPAEMTSDECQPAEAPLGDIGSNHRDPHPIWGKDRSWTGQELSPLAGEDR 154
>gi|148596994 nuclear pore complex interacting protein [Homo
sapiens]
Length = 350
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 10 LATNNECVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKE----GSPYK 65
L T +EC+ +P +P AD TP+ + P P+ TP E P
Sbjct: 263 LKTPSECLL---TPLPPSALPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPS 319
Query: 66 APIYIPDDIPIPAE 79
AP + D++ P E
Sbjct: 320 APPSVDDNLKTPPE 333
>gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 29.3 bits (64), Expect = 1.7
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 27 EEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYI----PDDIPIPAE--F 80
+++P + S P ++ SP +S E PKEG KAP +D+P +E
Sbjct: 20 DDLPKSSANTSHP----KQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKSSEKAI 75
Query: 81 ELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWEVHLPRSRRVSVHSWL 140
+ +ESN+P + + P +G PS E +P++ ++ S
Sbjct: 76 QPKESNIPKSS-----------AKPIQPKLGNIPKASVKPSQPKEGDIPKAPEETIQSKK 124
Query: 141 YLGKRSSDVGIAFSQADV 158
+SS+ I + D+
Sbjct: 125 EDLPKSSEEAIQPKEGDI 142
>gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo
sapiens]
Length = 553
Score = 29.3 bits (64), Expect = 1.7
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 27 EEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYI----PDDIPIPAE--F 80
+++P + S P ++ SP +S E PKEG KAP +D+P +E
Sbjct: 87 DDLPKSSANTSHP----KQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKSSEKAI 142
Query: 81 ELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWEVHLPRSRRVSVHSWL 140
+ +ESN+P + + P +G PS E +P++ ++ S
Sbjct: 143 QPKESNIPKSS-----------AKPIQPKLGNIPKASVKPSQPKEGDIPKAPEETIQSKK 191
Query: 141 YLGKRSSDVGIAFSQADV 158
+SS+ I + D+
Sbjct: 192 EDLPKSSEEAIQPKEGDI 209
>gi|42516570 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 29.3 bits (64), Expect = 1.7
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 27 EEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYI----PDDIPIPAE--F 80
+++P + S P ++ SP +S E PKEG KAP +D+P +E
Sbjct: 20 DDLPKSSANTSHP----KQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKSSEKAI 75
Query: 81 ELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWEVHLPRSRRVSVHSWL 140
+ +ESN+P + + P +G PS E +P++ ++ S
Sbjct: 76 QPKESNIPKSS-----------AKPIQPKLGNIPKASVKPSQPKEGDIPKAPEETIQSKK 124
Query: 141 YLGKRSSDVGIAFSQADV 158
+SS+ I + D+
Sbjct: 125 EDLPKSSEEAIQPKEGDI 142
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,570,525
Number of Sequences: 37866
Number of extensions: 380486
Number of successful extensions: 966
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 98
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.