Guide to the Human Genome
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Name: NPIP Sequence: fasta or formatted (350aa) NCBI GI: 148596994
Description:

nuclear pore complex interacting protein

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         19           2
 C cysteine            3.4         12           2
 D aspartate           4.3         15           2
 E glutamate           6.0         21           2
 F phenylalanine       2.6          9           1
 G glycine             4.0         14           2
 H histidine           3.7         13           1
 I isoleucine          4.6         16           2
 K lysine              7.1         25           1
 L leucine            10.0         35           2
 M methionine          2.6          9           1
 N asparagine          3.7         13           1
 P proline             8.6         30           4
 Q glutamine           3.4         12           2
 R arginine            8.3         29           3
 S serine              7.4         26           2
 T threonine           6.6         23           2
 V valine              4.0         14           1
 W tryptophan          1.7          6           1
 Y tyrosine            2.6          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear pore complex interacting protein 
LOC339047             0.977   hypothetical protein LOC339047 
LOC729978             0.703   PREDICTED: NPIP-like protein 2 isoform 2 
LOC729602             0.691   PREDICTED: NPIP-like protein ENSP00000283050 isofor...
LOC728734             0.610   PREDICTED: similar to NPIP-like protein ENSP0000028...
NPIPL1                0.596   PREDICTED: nuclear pore complex interacting protein...
LOC100132247          0.565   hypothetical protein LOC100132247 
NPIPL3                0.565   nuclear pore complex interacting protein-like 3 [Ho...
LOC728888             0.565   PREDICTED: similar to acyl-CoA synthetase medium-ch...
LOC100288332          0.516   PREDICTED: hypothetical protein XP_002343465 
LOC642799             0.516   PREDICTED: similar to GPS, PLAT and transmembrane d...
LOC642778             0.516   PREDICTED: similar to GPS, PLAT and transmembrane d...
LOC728741             0.473   PREDICTED: hypothetical protein 
NPIPL2                0.250   PREDICTED: nuclear pore complex interacting protein...
LOC100289169          0.219   PREDICTED: hypothetical protein XP_002343477 
LOC729602             0.179   PREDICTED: hypothetical protein LOC283846 
LOC730153             0.178   PREDICTED: similar to NPIP-like protein ENSP0000034...
ZFC3H1                0.028   proline/serine-rich coiled-coil 2 
JMY                   0.024   junction-mediating and regulatory protein 
APBB1IP               0.021   amyloid beta (A4) precursor protein-binding, family ...
TESK1                 0.021   testis-specific protein kinase 1 
BCORL1                0.021   BCL6 co-repressor-like 1 
MUC16                 0.020   mucin 16 
LOC100133756          0.020   PREDICTED: hypothetical protein, partial 
PRR12                 0.020   proline rich 12 
NHSL1                 0.018   NHS-like 1 
MUC2                  0.018   mucin 2 precursor 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
CCDC34                0.018   coiled-coil domain containing 34 isoform 1 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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