NPIP 4544

Name: NPIP	Sequence: fasta or formatted (350aa)		NCBI GI: 148596994
Description: nuclear pore complex interacting protein		Referenced in: Nucleus and Nucleolus
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 19 2 C cysteine 3.4 12 2 D aspartate 4.3 15 2 E glutamate 6.0 21 2 F phenylalanine 2.6 9 1 G glycine 4.0 14 2 H histidine 3.7 13 1 I isoleucine 4.6 16 2 K lysine 7.1 25 1 L leucine 10.0 35 2 M methionine 2.6 9 1 N asparagine 3.7 13 1 P proline 8.6 30 4 Q glutamine 3.4 12 2 R arginine 8.3 29 3 S serine 7.4 26 2 T threonine 6.6 23 2 V valine 4.0 14 1 W tryptophan 1.7 6 1 Y tyrosine 2.6 9 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nuclear pore complex interacting protein LOC339047 0.977 hypothetical protein LOC339047 LOC729978 0.703 PREDICTED: NPIP-like protein 2 isoform 2 LOC729602 0.691 PREDICTED: NPIP-like protein ENSP00000283050 isofor... LOC728734 0.610 PREDICTED: similar to NPIP-like protein ENSP0000028... NPIPL1 0.596 PREDICTED: nuclear pore complex interacting protein... LOC100132247 0.565 hypothetical protein LOC100132247 NPIPL3 0.565 nuclear pore complex interacting protein-like 3 [Ho... LOC728888 0.565 PREDICTED: similar to acyl-CoA synthetase medium-ch... LOC100288332 0.516 PREDICTED: hypothetical protein XP_002343465 LOC642799 0.516 PREDICTED: similar to GPS, PLAT and transmembrane d... LOC642778 0.516 PREDICTED: similar to GPS, PLAT and transmembrane d... LOC728741 0.473 PREDICTED: hypothetical protein NPIPL2 0.250 PREDICTED: nuclear pore complex interacting protein... LOC100289169 0.219 PREDICTED: hypothetical protein XP_002343477 LOC729602 0.179 PREDICTED: hypothetical protein LOC283846 LOC730153 0.178 PREDICTED: similar to NPIP-like protein ENSP0000034... ZFC3H1 0.028 proline/serine-rich coiled-coil 2 JMY 0.024 junction-mediating and regulatory protein APBB1IP 0.021 amyloid beta (A4) precursor protein-binding, family ... TESK1 0.021 testis-specific protein kinase 1 BCORL1 0.021 BCL6 co-repressor-like 1 MUC16 0.020 mucin 16 LOC100133756 0.020 PREDICTED: hypothetical protein, partial PRR12 0.020 proline rich 12 NHSL1 0.018 NHS-like 1 MUC2 0.018 mucin 2 precursor FLJ22184 0.018 PREDICTED: hypothetical protein FLJ22184 CCDC34 0.018 coiled-coil domain containing 34 isoform 1 NACA 0.017 nascent polypeptide-associated complex alpha subuni... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.