Guide to the Human Genome
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Name: PRDM16 Sequence: fasta or formatted (1256aa) NCBI GI: 41349472
Description:

PR domain containing 16 isoform 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [1275aa] PR domain containing 16 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         94           3
 C cysteine            2.9         37           1
 D aspartate           6.2         78           4
 E glutamate           7.8         98           3
 F phenylalanine       4.2         53           2
 G glycine             7.1         89           3
 H histidine           3.7         47           2
 I isoleucine          2.9         36           1
 K lysine              6.7         84           2
 L leucine             8.0        100           2
 M methionine          1.9         24           2
 N asparagine          3.2         40           2
 P proline             9.3        117           3
 Q glutamine           3.5         44           2
 R arginine            4.8         60           2
 S serine              8.7        109           2
 T threonine           4.9         62           3
 V valine              4.0         50           3
 W tryptophan          0.4          5           1
 Y tyrosine            2.3         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PR domain containing 16 isoform 2 
PRDM16                0.995   PR domain containing 16 isoform 1 
LOC100290519          0.884   PREDICTED: hypothetical protein XP_002346939 
EVI1                  0.413   ecotropic viral integration site 1 isoform a 
EVI1                  0.385   ecotropic viral integration site 1 isoform b 
EVI1                  0.385   ecotropic viral integration site 1 isoform b 
ZNF678                0.058   zinc finger protein 678 
ZNF595                0.055   zinc finger protein 595 
ZNF91                 0.054   zinc finger protein 91 
ZNF43                 0.054   zinc finger protein 43 
ZNF479                0.054   zinc finger protein 479 
ZNF184                0.054   zinc finger protein 184 
ZNF273                0.054   zinc finger protein 273 
ZNF845                0.053   zinc finger protein 845 
ZNF431                0.053   zinc finger protein 431 
ZNF497                0.053   zinc finger protein 497 
ZNF93                 0.053   zinc finger protein 93 
ZNF107                0.053   zinc finger protein 107 
ZNF107                0.053   zinc finger protein 107 
ZNF99                 0.053   zinc finger protein 99 
ZNF208                0.053   zinc finger protein 208 
ZNF486                0.053   zinc finger protein 486 
ZNF468                0.052   zinc finger protein ZNF468 isoform 1 
ZNF468                0.052   zinc finger protein ZNF468 isoform 2 
ZNF534                0.052   zinc finger protein 534 isoform 2 
ZNF534                0.052   zinc finger protein 534 isoform 1 
ZNF429                0.052   zinc finger protein 429 
ZNF85                 0.052   zinc finger protein 85 
ZNF708                0.052   zinc finger protein 708 
ZNF430                0.052   zinc finger protein 430 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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