Guide to the Human Genome
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Name: MDS1 Sequence: fasta or formatted (169aa) NCBI GI: 4826828
Description:

myelodysplasia syndrome protein 1

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         12           1
 C cysteine            1.8          3           1
 D aspartate           4.1          7           2
 E glutamate           8.3         14           2
 F phenylalanine       3.0          5           1
 G glycine             8.3         14           1
 H histidine           1.2          2           1
 I isoleucine          5.3          9           1
 K lysine              5.3          9           1
 L leucine             6.5         11           1
 M methionine          2.4          4           1
 N asparagine          3.6          6           2
 P proline            10.1         17           1
 Q glutamine           2.4          4           1
 R arginine            5.9         10           2
 S serine             10.1         17           2
 T threonine           3.0          5           1
 V valine              5.3          9           1
 W tryptophan          1.8          3           1
 Y tyrosine            4.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myelodysplasia syndrome protein 1 
PRDM16                0.317   PR domain containing 16 isoform 2 
PRDM16                0.317   PR domain containing 16 isoform 1 
PRDM2                 0.067   retinoblastoma protein-binding zinc finger protein ...
PRDM2                 0.067   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.067   retinoblastoma protein-binding zinc finger protein i...
PRDM5                 0.052   PR domain containing 5 
PRDM12                0.049   PR domain containing 12 
PRDM4                 0.034   PR domain containing 4 
BCORL1                0.030   BCL6 co-repressor-like 1 
ZBTB3                 0.027   zinc finger and BTB domain containing 3 
LOC100292304          0.024   PREDICTED: hypothetical protein 
LOC100286995          0.024   PREDICTED: hypothetical protein 
LOC100286995          0.024   PREDICTED: hypothetical protein XP_002344221 
PRDM7                 0.024   PR domain containing 7 isoform 1 
PRDM7                 0.024   PR domain containing 7 isoform 2 
PRDM9                 0.024   PR domain containing 9 
LOC100132247          0.021   hypothetical protein LOC100132247 
LOC728888             0.021   PREDICTED: similar to acyl-CoA synthetase medium-ch...
NPIPL3                0.018   nuclear pore complex interacting protein-like 3 [Ho...
MLL2                  0.015   myeloid/lymphoid or mixed-lineage leukemia 2 
TRIOBP                0.015   TRIO and F-actin binding protein isoform 6 
ITGB1BP2              0.015   integrin beta 1 binding protein 2 
MAFB                  0.015   transcription factor MAFB 
PRDM6                 0.015   PR domain containing 6 
MICALCL               0.015   MICAL C-terminal like 
NPIP                  0.015   nuclear pore complex interacting protein 
TXNDC2                0.012   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.012   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.012   thioredoxin domain-containing 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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