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Search of human proteins with 13375656
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13375656 UL16 binding protein 3 [Homo sapiens]
(244 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13375656 UL16 binding protein 3 [Homo sapiens] 510 e-145
gi|13376826 UL16 binding protein 1 [Homo sapiens] 266 1e-71
gi|130484306 retinoic acid early transcript 1G [Homo sapiens] 249 2e-66
gi|126723295 retinoic acid early transcript 1L [Homo sapiens] 243 1e-64
gi|13376824 UL16 binding protein 2 [Homo sapiens] 241 5e-64
gi|21040249 retinoic acid early transcript 1E [Homo sapiens] 158 4e-39
gi|4504417 major histocompatibility complex, class I-related [Ho... 77 2e-14
gi|24797067 major histocompatibility complex, class I, A precurs... 69 4e-12
gi|62912479 major histocompatibility complex, class I, E precurs... 65 7e-11
gi|17986001 major histocompatibility complex, class I, B precurs... 61 8e-10
gi|167857788 MHC class I polypeptide-related sequence B [Homo sa... 60 1e-09
gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens] 58 7e-09
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 55 6e-08
gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [H... 54 1e-07
gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Hom... 54 1e-07
gi|4557751 MHC class I polypeptide-related sequence A [Homo sapi... 54 1e-07
gi|52630342 major histocompatibility complex, class I, C precurs... 53 2e-07
gi|4504415 major histocompatibility complex, class I, G precurso... 52 5e-07
gi|4504377 hemochromatosis protein isoform 1 precursor [Homo sap... 51 8e-07
gi|21040347 hemochromatosis protein isoform 6 precursor [Homo sa... 48 7e-06
gi|149158702 major histocompatibility complex, class I, F isofor... 47 1e-05
gi|149158698 major histocompatibility complex, class I, F isofor... 47 1e-05
gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sa... 47 1e-05
gi|21040349 hemochromatosis protein isoform 7 precursor [Homo sa... 47 1e-05
gi|21040351 hemochromatosis protein isoform 8 precursor [Homo sa... 44 1e-04
gi|149158700 major histocompatibility complex, class I, F isofor... 44 1e-04
gi|110618224 CD1A antigen precursor [Homo sapiens] 32 0.66
gi|55770876 notch4 preproprotein [Homo sapiens] 30 1.5
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 30 2.5
gi|110618227 CD1C antigen precursor [Homo sapiens] 29 3.3
>gi|13375656 UL16 binding protein 3 [Homo sapiens]
Length = 244
Score = 510 bits (1314), Expect = e-145
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
Sbjct: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
Query: 61 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL 120
NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
Sbjct: 61 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL 120
Query: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
Sbjct: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
Query: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI 240
TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI
Sbjct: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI 240
Query: 241 LPGI 244
LPGI
Sbjct: 241 LPGI 244
>gi|13376826 UL16 binding protein 1 [Homo sapiens]
Length = 244
Score = 266 bits (680), Expect = 1e-71
Identities = 134/244 (54%), Positives = 170/244 (69%), Gaps = 2/244 (0%)
Query: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
MAAAASPA L L +L +LL WS G D H L Y+F I R QWCEVQ VD++
Sbjct: 1 MAAAASPAFLLCLPLL-HLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDER 59
Query: 61 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL 120
FL YDC + K + L +++ T W +Q E LR+V L+ +L D ++E+ P PL
Sbjct: 60 PFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPL 119
Query: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
TLQ RMSCE EA G+ RGSWQF F+G+KFLLFDSNNRKWT +H GA++M EKWEK+ +T
Sbjct: 120 TLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVT 179
Query: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLII-LCF 239
FF+ +S+ DCK WL +FLM+ ++ L+PT PP++APG QPKA+ATTLSPWS LII LCF
Sbjct: 180 MFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSLLIIFLCF 239
Query: 240 ILPG 243
IL G
Sbjct: 240 ILAG 243
>gi|130484306 retinoic acid early transcript 1G [Homo sapiens]
Length = 334
Score = 249 bits (636), Expect = 2e-66
Identities = 133/243 (54%), Positives = 160/243 (65%), Gaps = 4/243 (1%)
Query: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
MAAAASPA L RL +L LL W TG AD HSL Y+ T+I R G +WC VQ QVD+K
Sbjct: 1 MAAAASPAFLLRLPLL-LLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK 59
Query: 61 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL 120
FL YDCGS V + L ++L T AW Q +LREV L +L D +LE++ P PL
Sbjct: 60 TFLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPL 119
Query: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
TLQ RMSCE +A+G+ GSWQ SFDG+ FLLFDS NR WT VH GAR+MKEKWE D +T
Sbjct: 120 TLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMT 179
Query: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPT--APPTMAPGLAQPKAIATTLSPWSFLIILC 238
F +SM DC WL DFLM LEP+ APPTM+ G AQP+A ATTL L+I+C
Sbjct: 180 MSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLI-LCCLLIMC 238
Query: 239 FIL 241
++
Sbjct: 239 LLI 241
>gi|126723295 retinoic acid early transcript 1L [Homo sapiens]
Length = 246
Score = 243 bits (620), Expect = 1e-64
Identities = 133/247 (53%), Positives = 159/247 (64%), Gaps = 4/247 (1%)
Query: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
MAAAA PA+L L +L +LLF WS R D HSL Y+ T+I R G +WC VQ QVD+K
Sbjct: 1 MAAAAIPALLLCLPLL-FLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEK 59
Query: 61 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL 120
FL YDCG+ V + L ++L T AW Q +LREV L +L D +LE++TP PL
Sbjct: 60 TFLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPL 119
Query: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
TLQ RMSCE +A+G+ GSWQFS DG+ FLLFDS R WT VH GAR+MKEKWE D +
Sbjct: 120 TLQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVA 179
Query: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPT--APPTMAPGLAQPKAIATTLSPWSFLIIL- 237
F +SM DC WL DFLM LEP+ AP M+ G Q +A ATTL LIIL
Sbjct: 180 MSFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILP 239
Query: 238 CFILPGI 244
CFILPGI
Sbjct: 240 CFILPGI 246
>gi|13376824 UL16 binding protein 2 [Homo sapiens]
Length = 246
Score = 241 bits (614), Expect = 5e-64
Identities = 134/247 (54%), Positives = 158/247 (63%), Gaps = 4/247 (1%)
Query: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
MAAAA+ IL L +L LL WS GRAD HSL Y+ T+I R G +WC VQ QVD+K
Sbjct: 1 MAAAAATKILLCLPLL-LLLSGWSRAGRADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK 59
Query: 61 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL 120
FL YDCG+ V + L ++L T AW Q +LREV L +L D +LE++TP PL
Sbjct: 60 TFLHYDCGNKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLRDIQLENYTPKEPL 119
Query: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
TLQ RMSCE +A+G+ GSWQFSFDG+ FLLFDS R WT VH GAR+MKEKWE D +
Sbjct: 120 TLQARMSCEQKAEGHSSGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWENDKVVA 179
Query: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPT--APPTMAPGLAQPKAIATTLSPWSFLIIL- 237
F SM DC WL DFLM LEP+ AP M+ G Q +A ATTL LIIL
Sbjct: 180 MSFHYFSMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILP 239
Query: 238 CFILPGI 244
CFILPGI
Sbjct: 240 CFILPGI 246
>gi|21040249 retinoic acid early transcript 1E [Homo sapiens]
Length = 263
Score = 158 bits (400), Expect = 4e-39
Identities = 87/210 (41%), Positives = 126/210 (60%), Gaps = 5/210 (2%)
Query: 32 HSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDAWGKQ 91
HSL +NFTI L R GQ WCE Q +++ FL Y+ ++ V +G L +++YAT WG+
Sbjct: 31 HSLCFNFTIKSLSRPGQPWCEAQVFLNKNLFLQYNSDNNMVKPLGLLGKKVYATSTWGEL 90
Query: 92 LEMLREVGQRLRLELADTELEDFTPSGPLTLQVRMSCECEADGYIRGSWQFSFDGRKFLL 151
+ L EVG+ LR+ L D + + T S P TLQV M C+ EA+ SWQF+ +G K LL
Sbjct: 91 TQTLGEVGRDLRMLLCDIKPQIKT-SDPSTLQVEMFCQREAERCTGASWQFATNGEKSLL 149
Query: 152 FDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRKKRLEPTAP 211
FD+ N WTV++ A ++KE W+KD GL +F+ +S DC WLR+FL H + EPT
Sbjct: 150 FDAMNMTWTVINHEASKIKETWKKDRGLEKYFRKLSKGDCDHWLREFLGHWEAMPEPTVS 209
Query: 212 PTMAPGLAQPKAIATTLSPWSFLIILCFIL 241
P A + +++ P ++I+ FIL
Sbjct: 210 PVNASDIHW----SSSSLPDRWIILGAFIL 235
>gi|4504417 major histocompatibility complex, class I-related [Homo
sapiens]
Length = 341
Score = 76.6 bits (187), Expect = 2e-14
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 1/198 (0%)
Query: 15 ILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLS 74
+LP ++ + HSL Y + P HG VD +YD + +
Sbjct: 8 LLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQKEP 67
Query: 75 MGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVRMSCECEADG 134
+ A D W + ++LR Q ++EL + + SG T Q + CE DG
Sbjct: 68 RAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQ-RHYNHSGSHTYQRMIGCELLEDG 126
Query: 135 YIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSW 194
G Q+++DG+ FL+F+ + W V A +K+ WE + + K +C +W
Sbjct: 127 STTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNWLEEECIAW 186
Query: 195 LRDFLMHRKKRLEPTAPP 212
L+ FL + K L+ T PP
Sbjct: 187 LKRFLEYGKDTLQRTEPP 204
>gi|24797067 major histocompatibility complex, class I, A precursor
[Homo sapiens]
Length = 365
Score = 68.9 bits (167), Expect = 4e-12
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 11/216 (5%)
Query: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
MA A +L L+ L W+G+ HS+ Y FT + P G+ VD
Sbjct: 1 MAVMAPRTLLLLLSGALALTQTWAGS-----HSMRYFFTSVSRPGRGEPRFIAVGYVDDT 55
Query: 61 NFLSYD--CGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTE-LEDFTPS 117
F+ +D S ++ EQ + W ++ ++ Q R++L + + +
Sbjct: 56 QFVRFDSDAASQRMEPRAPWIEQ-EGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEA 114
Query: 118 GPLTLQVRMSCECEADG-YIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKD 176
G T+Q+ C+ +DG ++RG Q ++DG+ ++ + + R WT A+ K KWE
Sbjct: 115 GSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAA 174
Query: 177 SGLTTFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPP 212
+ C WLR +L + K+ L+ T PP
Sbjct: 175 HEAEQLRAYLD-GTCVEWLRRYLENGKETLQRTDPP 209
>gi|62912479 major histocompatibility complex, class I, E precursor
[Homo sapiens]
Length = 358
Score = 64.7 bits (156), Expect = 7e-11
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Query: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYD--CGSDKVLSMGHLEEQLYATD 86
A +HSL Y T + P G+ VD F+ +D S +++ EQ ++
Sbjct: 21 AGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQ-EGSE 79
Query: 87 AWGKQLEMLREVGQRLRLELADTE-LEDFTPSGPLTLQVRMSCECEADG-YIRGSWQFSF 144
W ++ R+ Q R+ L + + +G TLQ CE DG ++RG QF++
Sbjct: 80 YWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAY 139
Query: 145 DGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRKK 204
DG+ +L + + R WT V A ++ E+ D+ + C WL +L K+
Sbjct: 140 DGKDYLTLNEDLRSWTAVDTAA-QISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKE 198
Query: 205 RLEPTAPP 212
L PP
Sbjct: 199 TLLHLEPP 206
>gi|17986001 major histocompatibility complex, class I, B precursor
[Homo sapiens]
Length = 362
Score = 61.2 bits (147), Expect = 8e-10
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 11/216 (5%)
Query: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
M A +L L+ L W+G+ HS+ Y +T + P G+ VD
Sbjct: 1 MLVMAPRTVLLLLSAALALTETWAGS-----HSMRYFYTSVSRPGRGEPRFISVGYVDDT 55
Query: 61 NFLSYD--CGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTE-LEDFTPS 117
F+ +D S + EQ + W + ++ + Q R L + + + +
Sbjct: 56 QFVRFDSDAASPREEPRAPWIEQ-EGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEA 114
Query: 118 GPLTLQVRMSCECEADG-YIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKD 176
G TLQ C+ DG +RG Q+++DG+ ++ + + R WT A+ + KWE
Sbjct: 115 GSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEA- 173
Query: 177 SGLTTFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPP 212
+ + +C WLR +L + K +LE PP
Sbjct: 174 AREAEQRRAYLEGECVEWLRRYLENGKDKLERADPP 209
>gi|167857788 MHC class I polypeptide-related sequence B [Homo
sapiens]
Length = 383
Score = 60.5 bits (145), Expect = 1e-09
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 8/176 (4%)
Query: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDAW 88
A+ HSL YN ++ Q + +D + FL YD + G E + W
Sbjct: 23 AEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYDRQKRRAKPQGQWAENVLGAKTW 82
Query: 89 GKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVRMSCECEADGYIRGSWQFSFDGRK 148
+ E L E GQ LR L T ++D G +LQ CE D RGS F +DG
Sbjct: 83 DTETEDLTENGQDLRRTL--THIKD-QKGGLHSLQEIRVCEIHEDSSTRGSRHFYYDGEL 139
Query: 149 FLLFDSNNRKWTVVHAG-----ARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFL 199
FL + ++ TV + A + W++D+ T DC L+ +L
Sbjct: 140 FLSQNLETQESTVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQRYL 195
>gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens]
Length = 298
Score = 58.2 bits (139), Expect = 7e-09
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 10/211 (4%)
Query: 7 PAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQS--QVDQKNFLS 64
P +L L +L + + GR +SL Y +T L +H + Q+ ++ F
Sbjct: 6 PVLLSLLLLLGPAVPQENQDGR---YSLTYIYT--GLSKHVEDVPAFQALGSLNDLQFFR 60
Query: 65 YDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPS-GPLTLQ 123
Y+ K MG L Q+ + W KQ L++ + + +E +E + S G LQ
Sbjct: 61 YNSKDRKSQPMG-LWRQVEGMEDW-KQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQ 118
Query: 124 VRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFF 183
R CE E + W++ +DG+ ++ F+ W A+ K+KWE +
Sbjct: 119 GRFGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRA 178
Query: 184 KMVSMRDCKSWLRDFLMHRKKRLEPTAPPTM 214
K +C + LR +L + K L+ PP++
Sbjct: 179 KAYLEEECPATLRKYLKYSKNILDRQDPPSV 209
>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
sapiens]
Length = 366
Score = 55.1 bits (131), Expect = 6e-08
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 8/187 (4%)
Query: 31 AHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGH---LEEQLYATDA 87
+HSL Y +T + P G+ VD F+ +D S +E++ +
Sbjct: 39 SHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDSANPREEPRAPWMEQE--GPEY 96
Query: 88 WGKQLEMLREVGQRLRLELADTE-LEDFTPSGPLTLQVRMSCECEADG-YIRGSWQFSFD 145
W +Q ++++ Q R+ L + + +G TLQ+ C+ DG ++RG Q ++D
Sbjct: 97 WDEQTRIVKDTAQSFRVGLNTLRGYYNQSEAGSHTLQLMYGCDVGPDGRFLRGFMQDAYD 156
Query: 146 GRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRKKR 205
GR ++ + + R WT A+ K K E + R C LR +L K
Sbjct: 157 GRDYIALNEDLRSWTAADTAAQITKRKREAAGAAERQRNYLEGR-CVEGLRRYLETGKDA 215
Query: 206 LEPTAPP 212
L PP
Sbjct: 216 LLRADPP 222
>gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 53.9 bits (128), Expect = 1e-07
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 6/205 (2%)
Query: 11 PRLAILPYLLFDWSGTGRADAH-SLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGS 69
P+ L LLF G+ A++H SL Y+ T + P G V + + +LSY+
Sbjct: 6 PQPWALGLLLFLLPGSLGAESHLSLLYHLTAVSSPAPGTPAFWVSGWLGPQQYLSYNSLR 65
Query: 70 DKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVRMSCE 129
+ G + + W K+ LR + ++L LE + GP TLQ + CE
Sbjct: 66 GEAEPCGAWVWENQVSWYWEKETTDLR-IKEKLFLEA----FKALGGKGPYTLQGLLGCE 120
Query: 130 CEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMR 189
D + +F+ +G +F+ FD W A + ++W++ +
Sbjct: 121 LGPDNTSVPTAKFALNGEEFMNFDLKQGTWGGDWPEALAISQRWQQQDKAANKELTFLLF 180
Query: 190 DCKSWLRDFLMHRKKRLEPTAPPTM 214
C LR+ L + LE PP+M
Sbjct: 181 SCPHRLREHLERGRGNLEWKEPPSM 205
>gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 53.9 bits (128), Expect = 1e-07
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 6/205 (2%)
Query: 11 PRLAILPYLLFDWSGTGRADAH-SLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGS 69
P+ L LLF G+ A++H SL Y+ T + P G V + + +LSY+
Sbjct: 6 PQPWALGLLLFLLPGSLGAESHLSLLYHLTAVSSPAPGTPAFWVSGWLGPQQYLSYNSLR 65
Query: 70 DKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVRMSCE 129
+ G + + W K+ LR + ++L LE + GP TLQ + CE
Sbjct: 66 GEAEPCGAWVWENQVSWYWEKETTDLR-IKEKLFLEA----FKALGGKGPYTLQGLLGCE 120
Query: 130 CEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMR 189
D + +F+ +G +F+ FD W A + ++W++ +
Sbjct: 121 LGPDNTSVPTAKFALNGEEFMNFDLKQGTWGGDWPEALAISQRWQQQDKAANKELTFLLF 180
Query: 190 DCKSWLRDFLMHRKKRLEPTAPPTM 214
C LR+ L + LE PP+M
Sbjct: 181 SCPHRLREHLERGRGNLEWKEPPSM 205
>gi|4557751 MHC class I polypeptide-related sequence A [Homo
sapiens]
Length = 383
Score = 53.9 bits (128), Expect = 1e-07
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 9/189 (4%)
Query: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDAW 88
A+ HSL YN T++ Q + +D + FL D + G E + W
Sbjct: 23 AEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCDRQKCRAKPQGQWAEDVLGNKTW 82
Query: 89 GKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVRMSCECEADGYIRGSWQFSFDGRK 148
++ L G+ LR+ LA ++D G +LQ CE D R S F +DG
Sbjct: 83 DRETRDLTGNGKDLRMTLA--HIKD-QKEGLHSLQEIRVCEIHEDNSTRSSQHFYYDGEL 139
Query: 149 FLLFDSNNRKWTVVHAG-----ARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRK 203
FL + ++WT+ + A ++ ++D+ T DC LR +L
Sbjct: 140 FLSQNLETKEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADCLQELRRYLKSGV 199
Query: 204 KRLEPTAPP 212
L T PP
Sbjct: 200 V-LRRTVPP 207
>gi|52630342 major histocompatibility complex, class I, C precursor
[Homo sapiens]
Length = 366
Score = 53.1 bits (126), Expect = 2e-07
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 12/191 (6%)
Query: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGH-----LEEQLY 83
A +HS+ Y T + P G+ VD F+ +D SD G +E++
Sbjct: 24 ACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFD--SDAASPRGEPRAPWVEQE-- 79
Query: 84 ATDAWGKQLEMLREVGQRLRLELADTE-LEDFTPSGPLTLQVRMSCECEADG-YIRGSWQ 141
+ W ++ + + Q R+ L + + + G TLQ C+ DG +RG Q
Sbjct: 80 GPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQ 139
Query: 142 FSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMH 201
++DG+ ++ + + R WT A+ + K E + + C WLR +L +
Sbjct: 140 SAYDGKDYIALNEDLRSWTAADTAAQITQRKLEA-ARAAEQLRAYLEGTCVEWLRRYLEN 198
Query: 202 RKKRLEPTAPP 212
K+ L+ PP
Sbjct: 199 GKETLQRAEPP 209
>gi|4504415 major histocompatibility complex, class I, G precursor
[Homo sapiens]
Length = 338
Score = 52.0 bits (123), Expect = 5e-07
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 6/188 (3%)
Query: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGS--DKVLSMGHLEEQLYATD 86
A +HS+ Y + P G+ VD F+ +D S ++ EQ +
Sbjct: 24 AGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQ-EGPE 82
Query: 87 AWGKQLEMLREVGQRLRLELADTE-LEDFTPSGPLTLQVRMSCECEADG-YIRGSWQFSF 144
W ++ + Q R+ L + + + TLQ + C+ +DG +RG Q+++
Sbjct: 83 YWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAY 142
Query: 145 DGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRKK 204
DG+ +L + + R WT A+ K K E + + + C WL +L + K+
Sbjct: 143 DGKDYLALNEDLRSWTAADTAAQISKRKCEA-ANVAEQRRAYLEGTCVEWLHRYLENGKE 201
Query: 205 RLEPTAPP 212
L+ PP
Sbjct: 202 MLQRADPP 209
>gi|4504377 hemochromatosis protein isoform 1 precursor [Homo
sapiens]
Length = 348
Score = 51.2 bits (121), Expect = 8e-07
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 2/183 (1%)
Query: 31 AHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDAWGK 90
+HSL Y F G E VD + F+ YD S +V ++ W +
Sbjct: 27 SHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRISSQMWLQ 86
Query: 91 QLEMLREVGQRLRLELADTELEDFTPSGPL-TLQVRMSCECEADGYIRGSWQFSFDGRKF 149
+ L+ ++ T +E+ S TLQV + CE + D G W++ +DG+
Sbjct: 87 LSQSLKGWDHMFTVDFW-TIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDH 145
Query: 150 LLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRKKRLEPT 209
L F + W A K +WE+ + RDC + L+ L + L+
Sbjct: 146 LEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQ 205
Query: 210 APP 212
PP
Sbjct: 206 VPP 208
>gi|21040347 hemochromatosis protein isoform 6 precursor [Homo
sapiens]
Length = 334
Score = 48.1 bits (113), Expect = 7e-06
Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 2/170 (1%)
Query: 31 AHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDAWGK 90
+HSL Y F G E VD + F+ YD S +V ++ W +
Sbjct: 27 SHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRISSQMWLQ 86
Query: 91 QLEMLREVGQRLRLELADTELEDFTPSGPL-TLQVRMSCECEADGYIRGSWQFSFDGRKF 149
+ L+ ++ T +E+ S TLQV + CE + D G W++ +DG+
Sbjct: 87 LSQSLKGWDHMFTVDFW-TIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDH 145
Query: 150 LLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFL 199
L F + W A K +WE+ + RDC + L+ L
Sbjct: 146 LEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLL 195
>gi|149158702 major histocompatibility complex, class I, F isoform 1
precursor [Homo sapiens]
Length = 442
Score = 47.4 bits (111), Expect = 1e-05
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 10/190 (5%)
Query: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDA- 87
A +HSL Y T + P G+ VD FL +D SD + E +
Sbjct: 21 AGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFD--SDAAIPRMEPREPWVEQEGP 78
Query: 88 --WGKQLEMLREVGQRLRLELADTELEDFTPS--GPLTLQVRMSCECEADG-YIRGSWQF 142
W + Q R+ L + L + S G TLQ C+ DG +RG Q
Sbjct: 79 QYWEWTTGYAKANAQTDRVALRNL-LRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQH 137
Query: 143 SFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHR 202
++DG+ ++ + + R WT A+ + +E + F+ +C LR +L +
Sbjct: 138 AYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-YAEEFRTYLEGECLELLRRYLENG 196
Query: 203 KKRLEPTAPP 212
K+ L+ PP
Sbjct: 197 KETLQRADPP 206
>gi|149158698 major histocompatibility complex, class I, F isoform 2
precursor [Homo sapiens]
Length = 346
Score = 47.4 bits (111), Expect = 1e-05
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 10/190 (5%)
Query: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDA- 87
A +HSL Y T + P G+ VD FL +D SD + E +
Sbjct: 21 AGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFD--SDAAIPRMEPREPWVEQEGP 78
Query: 88 --WGKQLEMLREVGQRLRLELADTELEDFTPS--GPLTLQVRMSCECEADG-YIRGSWQF 142
W + Q R+ L + L + S G TLQ C+ DG +RG Q
Sbjct: 79 QYWEWTTGYAKANAQTDRVALRNL-LRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQH 137
Query: 143 SFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHR 202
++DG+ ++ + + R WT A+ + +E + F+ +C LR +L +
Sbjct: 138 AYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-YAEEFRTYLEGECLELLRRYLENG 196
Query: 203 KKRLEPTAPP 212
K+ L+ PP
Sbjct: 197 KETLQRADPP 206
>gi|21040353 hemochromatosis protein isoform 9 precursor [Homo
sapiens]
Length = 325
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/92 (28%), Positives = 40/92 (43%)
Query: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
TLQV + CE + D G W++ +DG+ L F + W A K +WE+
Sbjct: 94 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRA 153
Query: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPP 212
+ RDC + L+ L + L+ PP
Sbjct: 154 RQNRAYLERDCPAQLQQLLELGRGVLDQQVPP 185
>gi|21040349 hemochromatosis protein isoform 7 precursor [Homo
sapiens]
Length = 260
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/92 (28%), Positives = 40/92 (43%)
Query: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
TLQV + CE + D G W++ +DG+ L F + W A K +WE+
Sbjct: 29 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRA 88
Query: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPP 212
+ RDC + L+ L + L+ PP
Sbjct: 89 RQNRAYLERDCPAQLQQLLELGRGVLDQQVPP 120
>gi|21040351 hemochromatosis protein isoform 8 precursor [Homo
sapiens]
Length = 246
Score = 44.3 bits (103), Expect = 1e-04
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
TLQV + CE + D G W++ +DG+ L F + W A K +WE+
Sbjct: 29 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRA 88
Query: 181 TFFKMVSMRDCKSWLRDFL 199
+ RDC + L+ L
Sbjct: 89 RQNRAYLERDCPAQLQQLL 107
>gi|149158700 major histocompatibility complex, class I, F isoform 3
precursor [Homo sapiens]
Length = 254
Score = 43.9 bits (102), Expect = 1e-04
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 13/195 (6%)
Query: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDA- 87
A +HSL Y T + P G+ VD FL +D SD + E +
Sbjct: 21 AGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFD--SDAAIPRMEPREPWVEQEGP 78
Query: 88 --WGKQLEMLREVGQRLRLELADTELEDFTPS--GPLTLQVRMSCECEADG-YIRGSWQF 142
W + Q R+ L + L + S G TLQ C+ DG +RG Q
Sbjct: 79 QYWEWTTGYAKANAQTDRVALRNL-LRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQH 137
Query: 143 SFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHR 202
++DG+ ++ + + R WT A+ + +E + F+ +C LR +L +
Sbjct: 138 AYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-YAEEFRTYLEGECLELLRRYLENG 196
Query: 203 K---KRLEPTAPPTM 214
K +R E + PT+
Sbjct: 197 KETLQRAEQSPQPTI 211
>gi|110618224 CD1A antigen precursor [Homo sapiens]
Length = 327
Score = 31.6 bits (70), Expect = 0.66
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 9 ILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPR-HGQQWCE--VQSQVDQKNFLSY 65
+LP LA+LP G G AD +F + + + W + V + ++
Sbjct: 5 LLPLLAVLP-------GDGNADGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTW 57
Query: 66 DCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVR 125
D S ++ + ++ + W K+LE L + E + P +QV
Sbjct: 58 DSNSSTIVFLCPWSRGNFSNEEW-KELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVT 116
Query: 126 MSCECEADGYIRGSW-QFSFDGRKFLLFDSNN 156
CE + G + GS+ Q ++ G F+ F +N+
Sbjct: 117 GGCELHS-GKVSGSFLQLAYQGSDFVSFQNNS 147
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 30.4 bits (67), Expect = 1.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 26 TGRADAHSLWYNFTIIHLPRHGQQWCEVQ 54
TG A HSL F LP H QWCEV+
Sbjct: 1018 TGTAACHSLANAFYCQCLPGHTGQWCEVE 1046
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 29.6 bits (65), Expect = 2.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 203 KKRLEPTAPPTMAPGLAQPKAIATT 227
KK+ E A PT+APG AQP ++ T
Sbjct: 241 KKKAEAAAAPTVAPGPAQPGHVSPT 265
>gi|110618227 CD1C antigen precursor [Homo sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
Query: 25 GTGRADAHSLWYNFTIIHLPRH-GQQWCEVQSQ--VDQKNFLSYDCGSDKVLSMGHLEEQ 81
G ADA +F +I + Q W Q +D+ +D S ++ + + +
Sbjct: 15 GGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDSESGTIIFLHNWSKG 74
Query: 82 LYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVRMSCECEADGYIRGSWQ 141
++ + + R L E+ D +D++ P +QV+ CE + G +Q
Sbjct: 75 NFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKY-PFEVQVKAGCELHSGKSPEGFFQ 133
Query: 142 FSFDGRKFLLFDSNNRKW 159
+F+G L F N W
Sbjct: 134 VAFNGLDLLSF--QNTTW 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,342,518
Number of Sequences: 37866
Number of extensions: 461511
Number of successful extensions: 1613
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 40
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.