Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ULBP1 Sequence: fasta or formatted (244aa) NCBI GI: 13376826
Description:

UL16 binding protein 1

Referenced in:

HLA and Related Proteins
Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         17           4
 C cysteine            3.3          8           1
 D aspartate           4.5         11           1
 E glutamate           6.1         15           2
 F phenylalanine       5.7         14           2
 G glycine             5.3         13           1
 H histidine           3.3          8           1
 I isoleucine          3.7          9           2
 K lysine              7.0         17           2
 L leucine            13.1         32           2
 M methionine          3.3          8           1
 N asparagine          2.9          7           2
 P proline             6.1         15           2
 Q glutamine           4.5         11           1
 R arginine            3.7          9           1
 S serine              4.9         12           1
 T threonine           6.1         15           2
 V valine              4.1         10           2
 W tryptophan          4.1         10           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UL16 binding protein 1 
RAET1G                0.555   retinoic acid early transcript 1G 
RAET1L                0.549   retinoic acid early transcript 1L 
ULBP2                 0.540   UL16 binding protein 2 
ULBP3                 0.488   UL16 binding protein 3 
RAET1E                0.271   retinoic acid early transcript 1E 
MR1                   0.091   major histocompatibility complex, class I-related [Ho...
AZGP1                 0.061   alpha-2-glycoprotein 1, zinc 
HFE                   0.059   hemochromatosis protein isoform 1 precursor 
HLA-B                 0.057   major histocompatibility complex, class I, B precurs...
HLA-A                 0.051   major histocompatibility complex, class I, A precurs...
MICB                  0.051   MHC class I polypeptide-related sequence B 
FCGRT                 0.051   Fc fragment of IgG, receptor, transporter, alpha [H...
FCGRT                 0.051   Fc fragment of IgG, receptor, transporter, alpha [Hom...
HFE                   0.051   hemochromatosis protein isoform 9 precursor 
HFE                   0.051   hemochromatosis protein isoform 6 precursor 
HLA-G                 0.043   major histocompatibility complex, class I, G precurso...
HFE                   0.040   hemochromatosis protein isoform 7 precursor 
HLA-C                 0.038   major histocompatibility complex, class I, C precurs...
HFE                   0.030   hemochromatosis protein isoform 8 precursor 
MICA                  0.026   MHC class I polypeptide-related sequence A 
HLA-DPB1              0.008   major histocompatibility complex, class II, DP beta ...
KIAA0467              0.006   hypothetical protein LOC23334 
HLA-DRB3              0.006   major histocompatibility complex, class II, DR beta ...
LOC100293478          0.006   PREDICTED: similar to pleckstrin homology domain co...
LOC100291232          0.006   PREDICTED: hypothetical protein XP_002347841 
MUSK                  0.006   skeletal muscle receptor tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press