Guide to the Human Genome
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Name: CDH18 Sequence: fasta or formatted (790aa) NCBI GI: 4826671
Description:

cadherin 18, type 2 preproprotein

Referenced in:

Cadherins and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         44           2
 C cysteine            1.3         10           1
 D aspartate           8.0         63           2
 E glutamate           6.7         53           2
 F phenylalanine       3.4         27           2
 G glycine             6.2         49           3
 H histidine           2.5         20           2
 I isoleucine          7.1         56           2
 K lysine              4.7         37           3
 L leucine             7.5         59           2
 M methionine          1.6         13           1
 N asparagine          4.6         36           1
 P proline             5.1         40           2
 Q glutamine           3.2         25           1
 R arginine            5.3         42           4
 S serine              7.7         61           4
 T threonine           8.1         64           2
 V valine              7.2         57           2
 W tryptophan          0.5          4           1
 Y tyrosine            3.8         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cadherin 18, type 2 preproprotein 
CDH7                  0.596   cadherin 7, type 2 preproprotein 
CDH7                  0.596   cadherin 7, type 2 preproprotein 
CDH10                 0.587   cadherin 10, type 2 preproprotein 
CDH12                 0.583   cadherin 12, type 2 preproprotein 
CDH11                 0.576   cadherin 11, type 2 preproprotein 
CDH9                  0.573   cadherin 9, type 2 preproprotein 
CDH6                  0.569   cadherin 6, type 2 preproprotein 
CDH20                 0.566   cadherin 20, type 2 preproprotein 
CDH8                  0.564   cadherin 8, type 2 preproprotein 
CDH22                 0.495   cadherin 22 precursor 
CDH24                 0.479   cadherin-like 24 isoform 2 
CDH24                 0.467   cadherin-like 24 isoform 1 
CDH19                 0.418   cadherin 19, type 2 preproprotein 
CDH5                  0.327   cadherin 5, type 2 preproprotein 
CDH4                  0.238   cadherin 4, type 1 preproprotein 
CDH2                  0.238   cadherin 2, type 1 preproprotein 
CDH1                  0.223   cadherin 1, type 1 preproprotein 
CDH15                 0.217   cadherin 15 preproprotein 
CDH3                  0.212   cadherin 3, type 1 preproprotein 
DSC1                  0.159   desmocollin 1 isoform Dsc1a preproprotein 
DSC1                  0.157   desmocollin 1 isoform Dsc1b preproprotein 
DSC3                  0.156   desmocollin 3 isoform Dsc3a preproprotein 
DSC3                  0.152   desmocollin 3 isoform Dsc3b preproprotein 
DSC2                  0.142   desmocollin 2 isoform Dsc2a preproprotein 
CDH13                 0.141   cadherin 13 preproprotein 
DSC2                  0.140   desmocollin 2 isoform Dsc2b preproprotein 
FAT1                  0.132   FAT tumor suppressor 1 precursor 
CDH26                 0.124   cadherin-like 26 isoform a 
CDH17                 0.123   cadherin 17 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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