CDH1 30584

Name: CDH1	Sequence: fasta or formatted (882aa)		NCBI GI: 4757960
Description: cadherin 1, type 1 preproprotein		Referenced in: Cadherins and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 59 2 C cysteine 0.9 8 1 D aspartate 7.7 68 3 E glutamate 6.8 60 2 F phenylalanine 3.7 33 2 G glycine 6.1 54 3 H histidine 1.5 13 3 I isoleucine 5.4 48 2 K lysine 4.0 35 2 L leucine 8.6 76 5 M methionine 1.1 10 1 N asparagine 5.7 50 2 P proline 7.3 64 3 Q glutamine 3.5 31 2 R arginine 4.4 39 3 S serine 5.4 48 2 T threonine 9.1 80 2 V valine 7.9 70 2 W tryptophan 1.1 10 1 Y tyrosine 2.9 26 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 cadherin 1, type 1 preproprotein CDH3 0.509 cadherin 3, type 1 preproprotein CDH2 0.404 cadherin 2, type 1 preproprotein CDH4 0.390 cadherin 4, type 1 preproprotein CDH15 0.267 cadherin 15 preproprotein CDH7 0.216 cadherin 7, type 2 preproprotein CDH7 0.216 cadherin 7, type 2 preproprotein CDH13 0.211 cadherin 13 preproprotein CDH6 0.209 cadherin 6, type 2 preproprotein CDH10 0.207 cadherin 10, type 2 preproprotein DSC1 0.202 desmocollin 1 isoform Dsc1b preproprotein DSC1 0.202 desmocollin 1 isoform Dsc1a preproprotein CDH8 0.199 cadherin 8, type 2 preproprotein CDH11 0.198 cadherin 11, type 2 preproprotein CDH18 0.198 cadherin 18, type 2 preproprotein CDH9 0.196 cadherin 9, type 2 preproprotein CDH12 0.196 cadherin 12, type 2 preproprotein DSC2 0.187 desmocollin 2 isoform Dsc2b preproprotein DSC2 0.187 desmocollin 2 isoform Dsc2a preproprotein CDH20 0.186 cadherin 20, type 2 preproprotein DSC3 0.178 desmocollin 3 isoform Dsc3b preproprotein DSC3 0.178 desmocollin 3 isoform Dsc3a preproprotein CDH24 0.173 cadherin-like 24 isoform 2 CDH24 0.167 cadherin-like 24 isoform 1 CDH19 0.162 cadherin 19, type 2 preproprotein CDH26 0.160 cadherin-like 26 isoform a CDH5 0.160 cadherin 5, type 2 preproprotein CDH22 0.158 cadherin 22 precursor DSG4 0.153 desmoglein 4 isoform 2 DSG2 0.153 desmoglein 2 preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.