CDH13 28417

Name: CDH13	Sequence: fasta or formatted (713aa)		NCBI GI: 4502719
Description: cadherin 13 preproprotein		Referenced in: Cadherins and Related Proteins Gene Structure
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 42 2 C cysteine 1.1 8 1 D aspartate 8.0 57 2 E glutamate 5.0 36 2 F phenylalanine 3.8 27 1 G glycine 5.6 40 2 H histidine 1.7 12 1 I isoleucine 6.0 43 2 K lysine 4.8 34 2 L leucine 9.1 65 3 M methionine 1.8 13 2 N asparagine 5.9 42 2 P proline 7.3 52 2 Q glutamine 3.6 26 2 R arginine 3.9 28 1 S serine 6.0 43 2 T threonine 8.0 57 2 V valine 9.7 69 2 W tryptophan 0.4 3 1 Y tyrosine 2.2 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 cadherin 13 preproprotein CDH2 0.353 cadherin 2, type 1 preproprotein CDH4 0.326 cadherin 4, type 1 preproprotein CDH1 0.265 cadherin 1, type 1 preproprotein CDH3 0.253 cadherin 3, type 1 preproprotein CDH15 0.247 cadherin 15 preproprotein DSC3 0.226 desmocollin 3 isoform Dsc3b preproprotein DSC3 0.226 desmocollin 3 isoform Dsc3a preproprotein DSC2 0.218 desmocollin 2 isoform Dsc2b preproprotein DSC2 0.218 desmocollin 2 isoform Dsc2a preproprotein DSC1 0.201 desmocollin 1 isoform Dsc1b preproprotein DSC1 0.201 desmocollin 1 isoform Dsc1a preproprotein CDH26 0.199 cadherin-like 26 isoform a DSG4 0.181 desmoglein 4 isoform 1 DSG4 0.181 desmoglein 4 isoform 2 CDH7 0.173 cadherin 7, type 2 preproprotein CDH7 0.173 cadherin 7, type 2 preproprotein CDH20 0.165 cadherin 20, type 2 preproprotein DSG2 0.163 desmoglein 2 preproprotein CDH18 0.157 cadherin 18, type 2 preproprotein CDH17 0.152 cadherin 17 precursor CDH17 0.152 cadherin 17 precursor CDH11 0.151 cadherin 11, type 2 preproprotein DSG3 0.151 desmoglein 3 preproprotein CDH12 0.148 cadherin 12, type 2 preproprotein CDH22 0.147 cadherin 22 precursor CDH8 0.147 cadherin 8, type 2 preproprotein CDH10 0.143 cadherin 10, type 2 preproprotein CDH24 0.143 cadherin-like 24 isoform 2 CDH5 0.138 cadherin 5, type 2 preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.